• using R Under development (unstable) (2025-12-09 r89129)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-9) 15.2.0     GNU Fortran (Debian 15.2.0-9) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘IBLM/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘IBLM’ version ‘1.0.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘IBLM’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/11s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [3s/4s] ERROR Running examples in ‘IBLM-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: beta_corrected_density > ### Title: Density Plot of Beta Corrections for a Variable > ### Aliases: beta_corrected_density > > ### ** Examples > > # This function is created inside explain_iblm() and is output as an item > > df_list <- freMTPLmini |> split_into_train_validate_test(seed = 9000) > > iblm_model <- train_iblm_xgb( + df_list, + response_var = "ClaimRate", + family = "poisson" + ) Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :   Parameter 'watchlist' has been renamed to 'evals'. This warning will become an error in a future version. > > explain_objects <- explain_iblm(iblm_model, df_list$test) Error in xgboost::xgb.DMatrix(data.matrix(data)) :   [13:22:51] src/data/../collective/../data/array_interface.h:422: Check failed: ptr % alignment == 0 (1 vs. 0) : Input pointer misalignment. Stack trace:   [bt] (0) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x79ae1) [0x7f2628679ae1]   [bt] (1) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x280f7d) [0x7f2628880f7d]   [bt] (2) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromDense+0x13d) [0x7f2628b4929d]   [bt] (3) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromMat_R+0x21b) [0x7f262866f5fb]   [bt] (4) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x106b6e) [0x7f2643b06b6e]   [bt] (5) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1445a0) [0x7f2643b445a0]   [bt] (6) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1543ab) [0x7f2643b543ab]   [bt] (7) /home/hor Calls: explain_iblm ... data.frame -> <Anonymous> -> predict.xgb.Booster -> <Anonymous> Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [12s/11s] ERROR   Running ‘testthat.R’ [12s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(IBLM)   >   > test_check("IBLM")   Saving _problems/test-explain_iblm-222.R   Saving _problems/test-explain_iblm-247.R   Saving _problems/test-explain_iblm-272.R   Saving _problems/test-explain_iblm-300.R   Saving _problems/test-explain_iblm-328.R   Saving _problems/test-explain_iblm-361.R   Saving _problems/test-explain_iblm-421.R   Saving _problems/test-explain_iblm-454.R   Saving _problems/test-explain_iblm-484.R   Saving _problems/test-predict-32.R   [ FAIL 10 | WARN 12 | SKIP 4 | PASS 2 ]      ══ Skipped tests (4) ═══════════════════════════════════════════════════════════   • On CRAN (4): 'test-explain_iblm.R:4:3', 'test-get_pinball_scores.R:5:3',     'test-get_pinball_scores.R:85:3', 'test-train_iblm.R:6:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-explain_iblm.R:214:3'): test explain completes when one categorical and one continuous ──   Expected `{ ... }` not to throw any errors.   Actually got a <simpleError> with message:     [13:22:55] src/data/../collective/../data/array_interface.h:422: Check failed: ptr % alignment == 0 (1 vs. 0) : Input pointer misalignment.     Stack trace:       [bt] (0) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x79ae1) [0x7f42f6879ae1]       [bt] (1) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x280f7d) [0x7f42f6a80f7d]       [bt] (2) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromDense+0x13d) [0x7f42f6d4929d]       [bt] (3) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromMat_R+0x21b) [0x7f42f686f5fb]       [bt] (4) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x106b6e) [0x7f4312106b6e]       [bt] (5) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1445a0) [0x7f43121445a0]       [bt] (6) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1543ab) [0x7f43121543ab]       [bt] (7) /home/hornik/tmp/   ── Failure ('test-explain_iblm.R:239:3'): test explain completes when categorical only ──   Expected `{ ... }` not to throw any errors.   Actually got a <simpleError> with message:     [13:22:56] src/data/../collective/../data/array_interface.h:422: Check failed: ptr % alignment == 0 (1 vs. 0) : Input pointer misalignment.     Stack trace:       [bt] (0) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x79ae1) [0x7f42f6879ae1]       [bt] (1) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x280f7d) [0x7f42f6a80f7d]       [bt] (2) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromDense+0x13d) [0x7f42f6d4929d]       [bt] (3) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromMat_R+0x21b) [0x7f42f686f5fb]       [bt] (4) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x106b6e) [0x7f4312106b6e]       [bt] (5) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1445a0) [0x7f43121445a0]       [bt] (6) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1543ab) [0x7f43121543ab]       [bt] (7) /home/hornik/tmp/   ── Failure ('test-explain_iblm.R:264:3'): test explain completes when continuous only ──   Expected `{ ... }` not to throw any errors.   Actually got a <simpleError> with message:     [13:22:56] src/data/../collective/../data/array_interface.h:422: Check failed: ptr % alignment == 0 (1 vs. 0) : Input pointer misalignment.     Stack trace:       [bt] (0) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x79ae1) [0x7f42f6879ae1]       [bt] (1) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x280f7d) [0x7f42f6a80f7d]       [bt] (2) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromDense+0x13d) [0x7f42f6d4929d]       [bt] (3) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromMat_R+0x21b) [0x7f42f686f5fb]       [bt] (4) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x106b6e) [0x7f4312106b6e]       [bt] (5) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1445a0) [0x7f43121445a0]       [bt] (6) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1543ab) [0x7f43121543ab]       [bt] (7) /home/hornik/tmp/   ── Failure ('test-explain_iblm.R:292:3'): test explain completes when logical field ──   Expected `{ ... }` not to throw any errors.   Actually got a <simpleError> with message:     [13:22:57] src/data/../collective/../data/array_interface.h:422: Check failed: ptr % alignment == 0 (1 vs. 0) : Input pointer misalignment.     Stack trace:       [bt] (0) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x79ae1) [0x7f42f6879ae1]       [bt] (1) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x280f7d) [0x7f42f6a80f7d]       [bt] (2) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromDense+0x13d) [0x7f42f6d4929d]       [bt] (3) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromMat_R+0x21b) [0x7f42f686f5fb]       [bt] (4) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x106b6e) [0x7f4312106b6e]       [bt] (5) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1445a0) [0x7f43121445a0]       [bt] (6) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1543ab) [0x7f43121543ab]       [bt] (7) /home/hornik/tmp/   ── Failure ('test-explain_iblm.R:320:3'): test explain completes when no reference/zero levels ──   Expected `{ ... }` not to throw any errors.   Actually got a <simpleError> with message:     [13:22:57] src/data/../collective/../data/array_interface.h:422: Check failed: ptr % alignment == 0 (1 vs. 0) : Input pointer misalignment.     Stack trace:       [bt] (0) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x79ae1) [0x7f42f6879ae1]       [bt] (1) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x280f7d) [0x7f42f6a80f7d]       [bt] (2) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromDense+0x13d) [0x7f42f6d4929d]       [bt] (3) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromMat_R+0x21b) [0x7f42f686f5fb]       [bt] (4) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x106b6e) [0x7f4312106b6e]       [bt] (5) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1445a0) [0x7f43121445a0]       [bt] (6) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1543ab) [0x7f43121543ab]       [bt] (7) /home/hornik/tmp/   ── Error ('test-explain_iblm.R:361:3'): test migrate-to-bias vs non-migrate-to-bias options ──   Error in `xgboost::xgb.DMatrix(data.matrix(data))`: [13:22:58] src/data/../collective/../data/array_interface.h:422: Check failed: ptr % alignment == 0 (1 vs. 0) : Input pointer misalignment.   Stack trace:     [bt] (0) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x79ae1) [0x7f42f6879ae1]     [bt] (1) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x280f7d) [0x7f42f6a80f7d]     [bt] (2) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromDense+0x13d) [0x7f42f6d4929d]     [bt] (3) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromMat_R+0x21b) [0x7f42f686f5fb]     [bt] (4) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x106b6e) [0x7f4312106b6e]     [bt] (5) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1445a0) [0x7f43121445a0]     [bt] (6) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1543ab) [0x7f43121543ab]     [bt] (7) /home/hornik/tmp/   Backtrace:       ▆    1. └─IBLM::explain_iblm(iblm_model = IBLM, data = splits$test, migrate_reference_to_bias = TRUE) at test-explain_iblm.R:361:3    2. ├─IBLM::extract_booster_shap(iblm_model$booster_model, data)    3. └─IBLM:::extract_booster_shap.xgb.Booster(...)    4. ├─base::data.frame(...)    5. ├─stats::predict(...)    6. ├─xgboost:::predict.xgb.Booster(...)    7. └─xgboost::xgb.DMatrix(data.matrix(data))   ── Failure ('test-explain_iblm.R:413:3'): test gaussian can run ────────────────   Expected `{ ... }` not to throw any errors.   Actually got a <simpleError> with message:     [13:22:58] src/data/../collective/../data/array_interface.h:422: Check failed: ptr % alignment == 0 (1 vs. 0) : Input pointer misalignment.     Stack trace:       [bt] (0) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x79ae1) [0x7f42f6879ae1]       [bt] (1) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x280f7d) [0x7f42f6a80f7d]       [bt] (2) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromDense+0x13d) [0x7f42f6d4929d]       [bt] (3) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromMat_R+0x21b) [0x7f42f686f5fb]       [bt] (4) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x106b6e) [0x7f4312106b6e]       [bt] (5) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1445a0) [0x7f43121445a0]       [bt] (6) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1543ab) [0x7f43121543ab]       [bt] (7) /home/hornik/tmp/   ── Failure ('test-explain_iblm.R:445:3'): test gamma can run ───────────────────   Expected `{ ... }` not to throw any errors.   Actually got a <simpleError> with message:     [13:22:59] src/data/../collective/../data/array_interface.h:422: Check failed: ptr % alignment == 0 (1 vs. 0) : Input pointer misalignment.     Stack trace:       [bt] (0) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x79ae1) [0x7f42f6879ae1]       [bt] (1) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x280f7d) [0x7f42f6a80f7d]       [bt] (2) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromDense+0x13d) [0x7f42f6d4929d]       [bt] (3) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromMat_R+0x21b) [0x7f42f686f5fb]       [bt] (4) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x106b6e) [0x7f4312106b6e]       [bt] (5) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1445a0) [0x7f43121445a0]       [bt] (6) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1543ab) [0x7f43121543ab]       [bt] (7) /home/hornik/tmp/   ── Failure ('test-explain_iblm.R:475:3'): test tweedie can run ─────────────────   Expected `{ ... }` not to throw any errors.   Actually got a <simpleError> with message:     [13:22:59] src/data/../collective/../data/array_interface.h:422: Check failed: ptr % alignment == 0 (1 vs. 0) : Input pointer misalignment.     Stack trace:       [bt] (0) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x79ae1) [0x7f42f6879ae1]       [bt] (1) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x280f7d) [0x7f42f6a80f7d]       [bt] (2) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromDense+0x13d) [0x7f42f6d4929d]       [bt] (3) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromMat_R+0x21b) [0x7f42f686f5fb]       [bt] (4) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x106b6e) [0x7f4312106b6e]       [bt] (5) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1445a0) [0x7f43121445a0]       [bt] (6) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1543ab) [0x7f43121543ab]       [bt] (7) /home/hornik/tmp/   ── Error ('test-predict.R:32:3'): test corrected beta coeffecient predictions are same as predict iblm() ──   Error in `xgboost::xgb.DMatrix(data.matrix(data))`: [13:23:01] src/data/../collective/../data/array_interface.h:422: Check failed: ptr % alignment == 0 (1 vs. 0) : Input pointer misalignment.   Stack trace:     [bt] (0) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x79ae1) [0x7f42f6879ae1]     [bt] (1) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(+0x280f7d) [0x7f42f6a80f7d]     [bt] (2) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromDense+0x13d) [0x7f42f6d4929d]     [bt] (3) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xgboost/libs/xgboost.so(XGDMatrixCreateFromMat_R+0x21b) [0x7f42f686f5fb]     [bt] (4) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x106b6e) [0x7f4312106b6e]     [bt] (5) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1445a0) [0x7f43121445a0]     [bt] (6) /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1543ab) [0x7f43121543ab]     [bt] (7) /home/hornik/tmp/   Backtrace:       ▆    1. └─IBLM::explain_iblm(iblm_model = IBLM, data = splits$test, migrate_reference_to_bias = TRUE) at test-predict.R:32:3    2. ├─IBLM::extract_booster_shap(iblm_model$booster_model, data)    3. └─IBLM:::extract_booster_shap.xgb.Booster(...)    4. ├─base::data.frame(...)    5. ├─stats::predict(...)    6. ├─xgboost:::predict.xgb.Booster(...)    7. └─xgboost::xgb.DMatrix(data.matrix(data))      [ FAIL 10 | WARN 12 | SKIP 4 | PASS 2 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs