• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 11:55:09 UTC
• checking for file ‘HTSCluster/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘HTSCluster’ version ‘2.0.11’
• checking CRAN incoming feasibility ... [1s/2s] NOTE Maintainer: ‘Andrea Rau <andrea.rau@jouy.inra.fr>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = "Andrea",                       family = "Rau",                       role = c("aut", "cre"),                       email = "andrea.rau@jouy.inra.fr"),                person(given = "Gilles",                       family = "Celeux",                       role = "aut"),                person(given = "Marie-Laure",                       family = "Martin-Magniette",                       role = "aut"),                person(given = c("Cathy", "Maugis-"),                       family = "Rabusseau",                       role = "aut")) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘HTSCluster’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/10s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] OK
• checking PDF version of manual ... [4s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0XF2Vs’ ‘~/tmp/scratch/Rtmp0eSzAd’   ‘~/tmp/scratch/Rtmp14TiLK’ ‘~/tmp/scratch/Rtmp1TPT7V’   ‘~/tmp/scratch/Rtmp1nErdz’ ‘~/tmp/scratch/Rtmp2PiTG6’   ‘~/tmp/scratch/Rtmp2oK7pm’ ‘~/tmp/scratch/Rtmp3Wv3xh’   ‘~/tmp/scratch/Rtmp3ZicaS’ ‘~/tmp/scratch/Rtmp3hisRR’   ‘~/tmp/scratch/Rtmp4Qafqr’ ‘~/tmp/scratch/Rtmp4qjnne’   ‘~/tmp/scratch/Rtmp6A7ZtX’ ‘~/tmp/scratch/Rtmp6N85QH’   ‘~/tmp/scratch/Rtmp6S1DNF’ ‘~/tmp/scratch/Rtmp6hKlpl’   ‘~/tmp/scratch/Rtmp74x0Gu’ ‘~/tmp/scratch/Rtmp8lGNUY’   ‘~/tmp/scratch/Rtmp8rcsiz’ ‘~/tmp/scratch/Rtmp9AVOMN’   ‘~/tmp/scratch/RtmpAYRrjg’ ‘~/tmp/scratch/RtmpBKukvi’   ‘~/tmp/scratch/RtmpCYQyGO’ ‘~/tmp/scratch/RtmpD3NENK’   ‘~/tmp/scratch/RtmpE3EGks’ ‘~/tmp/scratch/RtmpE3mftb’   ‘~/tmp/scratch/RtmpEmljdf’ ‘~/tmp/scratch/RtmpEqXXHc’   ‘~/tmp/scratch/RtmpFClUTh’ ‘~/tmp/scratch/RtmpFynQOt’   ‘~/tmp/scratch/RtmpG0fKlI’ ‘~/tmp/scratch/RtmpGuhTYN’   ‘~/tmp/scratch/RtmpHlhIVA’ ‘~/tmp/scratch/RtmpIU41XI’   ‘~/tmp/scratch/RtmpJw7ZvA’ ‘~/tmp/scratch/RtmpKQ1Kaa’   ‘~/tmp/scratch/RtmpKXiGOj’ ‘~/tmp/scratch/RtmpLaMYxc’   ‘~/tmp/scratch/RtmpLwj325’ ‘~/tmp/scratch/RtmpMH0OWQ’   ‘~/tmp/scratch/RtmpOLWyPk’ ‘~/tmp/scratch/RtmpP0FTXl’   ‘~/tmp/scratch/RtmpRYeRtX’ ‘~/tmp/scratch/RtmpRjxbWE’   ‘~/tmp/scratch/RtmpRsIfSE’ ‘~/tmp/scratch/RtmpSOWqIr’   ‘~/tmp/scratch/RtmpSoTuRE’ ‘~/tmp/scratch/RtmpU0p0Nw’   ‘~/tmp/scratch/RtmpUWV3mE’ ‘~/tmp/scratch/RtmpWELgI7’   ‘~/tmp/scratch/RtmpX5erZG’ ‘~/tmp/scratch/RtmpXKsrmq’   ‘~/tmp/scratch/RtmpXf1NAm’ ‘~/tmp/scratch/RtmpXuMr9q’   ‘~/tmp/scratch/RtmpY1IYcV’ ‘~/tmp/scratch/RtmpYpHkIM’   ‘~/tmp/scratch/Rtmpb1AEm5’ ‘~/tmp/scratch/RtmpbEWnTp’   ‘~/tmp/scratch/Rtmpc5KNZk’ ‘~/tmp/scratch/Rtmpc7BbKf’   ‘~/tmp/scratch/RtmpdKPt8E’ ‘~/tmp/scratch/RtmpdZcXU0’   ‘~/tmp/scratch/RtmpeISNCO’ ‘~/tmp/scratch/Rtmpemh66Y’   ‘~/tmp/scratch/RtmpgbZzOX’ ‘~/tmp/scratch/RtmpgqLLRW’   ‘~/tmp/scratch/RtmphrEerS’ ‘~/tmp/scratch/RtmpiE6EnB’   ‘~/tmp/scratch/RtmpiVjlhd’ ‘~/tmp/scratch/RtmpiYHTV3’   ‘~/tmp/scratch/RtmpidF5jA’ ‘~/tmp/scratch/RtmpjlAbCd’   ‘~/tmp/scratch/RtmpkY95z4’ ‘~/tmp/scratch/RtmpkuklwK’   ‘~/tmp/scratch/RtmplIsC4J’ ‘~/tmp/scratch/RtmplPqq65’   ‘~/tmp/scratch/RtmplfkB43’ ‘~/tmp/scratch/Rtmpln4xgj’   ‘~/tmp/scratch/RtmpmLW9iQ’ ‘~/tmp/scratch/RtmpmapgjA’   ‘~/tmp/scratch/RtmpmtlC0e’ ‘~/tmp/scratch/Rtmpn2E1AO’   ‘~/tmp/scratch/RtmpnXU28Z’ ‘~/tmp/scratch/RtmpntJA04’   ‘~/tmp/scratch/Rtmpo3c02s’ ‘~/tmp/scratch/Rtmpp8kNEf’   ‘~/tmp/scratch/RtmppPqYyZ’ ‘~/tmp/scratch/RtmppVSgPF’   ‘~/tmp/scratch/RtmppsgIsk’ ‘~/tmp/scratch/RtmpqBPo7Q’   ‘~/tmp/scratch/Rtmpr4Ivsc’ ‘~/tmp/scratch/Rtmpr9KM9J’   ‘~/tmp/scratch/RtmpsChGMV’ ‘~/tmp/scratch/Rtmpt2OIlm’   ‘~/tmp/scratch/RtmpuAvFhC’ ‘~/tmp/scratch/RtmpupF4r6’   ‘~/tmp/scratch/Rtmpv9RV5X’ ‘~/tmp/scratch/RtmpvaMP3F’   ‘~/tmp/scratch/RtmpvlqWQz’ ‘~/tmp/scratch/RtmpwPR3yo’   ‘~/tmp/scratch/RtmpwdDPdj’ ‘~/tmp/scratch/Rtmpxrs3Tn’   ‘~/tmp/scratch/RtmpyHbtpQ’ ‘~/tmp/scratch/RtmpyLPKW3’   ‘~/tmp/scratch/RtmpygMhaz’ ‘~/tmp/scratch/RtmpypRGag’   ‘~/tmp/scratch/RtmpzTLLPV’ ‘~/tmp/scratch/xvfb-run.0vm84H’   ‘~/tmp/scratch/xvfb-run.2CxJCg’ ‘~/tmp/scratch/xvfb-run.3IrCGY’   ‘~/tmp/scratch/xvfb-run.6IIDQL’ ‘~/tmp/scratch/xvfb-run.92AZWp’   ‘~/tmp/scratch/xvfb-run.A4iUmY’ ‘~/tmp/scratch/xvfb-run.CAepUn’   ‘~/tmp/scratch/xvfb-run.EfExsh’ ‘~/tmp/scratch/xvfb-run.GbkFPN’   ‘~/tmp/scratch/xvfb-run.Gt0I1A’ ‘~/tmp/scratch/xvfb-run.KPyLl9’   ‘~/tmp/scratch/xvfb-run.MA2U7J’ ‘~/tmp/scratch/xvfb-run.MJfYOv’   ‘~/tmp/scratch/xvfb-run.PFrfoO’ ‘~/tmp/scratch/xvfb-run.PHLKJ0’   ‘~/tmp/scratch/xvfb-run.Sr5GvL’ ‘~/tmp/scratch/xvfb-run.Su4PEH’   ‘~/tmp/scratch/xvfb-run.X2aLN6’ ‘~/tmp/scratch/xvfb-run.ZRZEv4’   ‘~/tmp/scratch/xvfb-run.ZSeO8c’ ‘~/tmp/scratch/xvfb-run.bge8vq’   ‘~/tmp/scratch/xvfb-run.buM44Y’ ‘~/tmp/scratch/xvfb-run.cWEmnc’   ‘~/tmp/scratch/xvfb-run.cc9j7O’ ‘~/tmp/scratch/xvfb-run.cxoawc’   ‘~/tmp/scratch/xvfb-run.dsqFBc’ ‘~/tmp/scratch/xvfb-run.eIcOHN’   ‘~/tmp/scratch/xvfb-run.exmuUP’ ‘~/tmp/scratch/xvfb-run.fOYxko’   ‘~/tmp/scratch/xvfb-run.gcsKMC’ ‘~/tmp/scratch/xvfb-run.iG104j’   ‘~/tmp/scratch/xvfb-run.iJNKyD’ ‘~/tmp/scratch/xvfb-run.lpQ4Nb’   ‘~/tmp/scratch/xvfb-run.oRkXrI’ ‘~/tmp/scratch/xvfb-run.pmMPTB’   ‘~/tmp/scratch/xvfb-run.rBeaZm’ ‘~/tmp/scratch/xvfb-run.rqtuRC’   ‘~/tmp/scratch/xvfb-run.sLNenZ’ ‘~/tmp/scratch/xvfb-run.uQfOR2’   ‘~/tmp/scratch/xvfb-run.uyKbm6’ ‘~/tmp/scratch/xvfb-run.vJVR8X’   ‘~/tmp/scratch/xvfb-run.vaWbH9’   ‘/dev/shm/sm_segment.gimli1.1001.74740000.0’   ‘~/.cache/pocl/uncached/tempfile_KArnRB’
• DONE

Status: 2 NOTEs