• using R Under development (unstable) (2026-08-02 r90338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-03 11:51:49 UTC
• checking for file ‘GenomeAdmixR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘GenomeAdmixR’ version ‘2.1.13.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘GenomeAdmixR’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking C++ specification ... INFO   specified C++17
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/11s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [8s/10s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [39s/49s] OK   Running ‘testthat.R’ [39s/49s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [82s/109s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0FJAPS’ ‘~/tmp/scratch/Rtmp1GLsOm’   ‘~/tmp/scratch/Rtmp1PU65D’ ‘~/tmp/scratch/Rtmp25cOSR’   ‘~/tmp/scratch/Rtmp2ftWCR’ ‘~/tmp/scratch/Rtmp2s0TQQ’   ‘~/tmp/scratch/Rtmp6f9yIO’ ‘~/tmp/scratch/Rtmp75Qt8t’   ‘~/tmp/scratch/Rtmp7DrPii’ ‘~/tmp/scratch/Rtmp7KHfAE’   ‘~/tmp/scratch/Rtmp7TgWO9’ ‘~/tmp/scratch/Rtmp7igJma’   ‘~/tmp/scratch/Rtmp7z43vk’ ‘~/tmp/scratch/Rtmp8IBATJ’   ‘~/tmp/scratch/Rtmp8PQKoW’ ‘~/tmp/scratch/Rtmp8QjWh5’   ‘~/tmp/scratch/Rtmp8Ts9i1’ ‘~/tmp/scratch/Rtmp8YpbJO’   ‘~/tmp/scratch/Rtmp904BSS’ ‘~/tmp/scratch/Rtmp96XYwM’   ‘~/tmp/scratch/Rtmp9BnUh9’ ‘~/tmp/scratch/Rtmp9Lilh8’   ‘~/tmp/scratch/Rtmp9cnMI6’ ‘~/tmp/scratch/Rtmp9icGe7’   ‘~/tmp/scratch/Rtmp9yt5Rq’ ‘~/tmp/scratch/RtmpA3cWV5’   ‘~/tmp/scratch/RtmpA6cAi9’ ‘~/tmp/scratch/RtmpAejvNZ’   ‘~/tmp/scratch/RtmpAt3wsv’ ‘~/tmp/scratch/RtmpAvafqW’   ‘~/tmp/scratch/RtmpB0xFt1’ ‘~/tmp/scratch/RtmpB8QLLj’   ‘~/tmp/scratch/RtmpBUDDWR’ ‘~/tmp/scratch/RtmpBZeLdU’   ‘~/tmp/scratch/RtmpBjEOZG’ ‘~/tmp/scratch/RtmpC0ennz’   ‘~/tmp/scratch/RtmpC6iLhc’ ‘~/tmp/scratch/RtmpCRJ5Ta’   ‘~/tmp/scratch/RtmpD4cMcn’ ‘~/tmp/scratch/RtmpDGHiUo’   ‘~/tmp/scratch/RtmpEXX2Fa’ ‘~/tmp/scratch/RtmpEq8nTF’   ‘~/tmp/scratch/RtmpEwp9Z2’ ‘~/tmp/scratch/RtmpG1uv4g’   ‘~/tmp/scratch/RtmpG2hmqS’ ‘~/tmp/scratch/RtmpGRZJs7’   ‘~/tmp/scratch/RtmpGY4RwB’ ‘~/tmp/scratch/RtmpGaQ8Cw’   ‘~/tmp/scratch/RtmpGnAQ6p’ ‘~/tmp/scratch/RtmpHHvFnz’   ‘~/tmp/scratch/RtmpHRHLqG’ ‘~/tmp/scratch/RtmpHYEt1T’   ‘~/tmp/scratch/RtmpI4sypA’ ‘~/tmp/scratch/RtmpII3Zjs’   ‘~/tmp/scratch/RtmpIcQHtW’ ‘~/tmp/scratch/RtmpIl19T2’   ‘~/tmp/scratch/RtmpIqSkDA’ ‘~/tmp/scratch/RtmpKCtLUr’   ‘~/tmp/scratch/RtmpKDnjhS’ ‘~/tmp/scratch/RtmpKQVKAe’   ‘~/tmp/scratch/RtmpKiYtqI’ ‘~/tmp/scratch/RtmpKr1pEy’   ‘~/tmp/scratch/RtmpLZA4lu’ ‘~/tmp/scratch/RtmpLmBu2s’   ‘~/tmp/scratch/RtmpMHANTb’ ‘~/tmp/scratch/RtmpNoZS9A’   ‘~/tmp/scratch/RtmpOAkEY0’ ‘~/tmp/scratch/RtmpOAlr5o’   ‘~/tmp/scratch/RtmpOPgakC’ ‘~/tmp/scratch/RtmpOT4dRx’   ‘~/tmp/scratch/RtmpPO1lt7’ ‘~/tmp/scratch/RtmpQ0U4cu’   ‘~/tmp/scratch/RtmpQOmC3l’ ‘~/tmp/scratch/RtmpQaQMzs’   ‘~/tmp/scratch/RtmpQwI0M4’ ‘~/tmp/scratch/RtmpR8eSkU’   ‘~/tmp/scratch/RtmpRfKw7n’ ‘~/tmp/scratch/RtmpRglUTW’   ‘~/tmp/scratch/RtmpRibcDw’ ‘~/tmp/scratch/RtmpSJAxvj’   ‘~/tmp/scratch/RtmpT175NA’ ‘~/tmp/scratch/RtmpTNO3t8’   ‘~/tmp/scratch/RtmpTWuQMq’ ‘~/tmp/scratch/RtmpTsewX5’   ‘~/tmp/scratch/RtmpUAYRnn’ ‘~/tmp/scratch/RtmpUK0AWg’   ‘~/tmp/scratch/RtmpUau7q0’ ‘~/tmp/scratch/RtmpUfMkfK’   ‘~/tmp/scratch/RtmpUr43Nw’ ‘~/tmp/scratch/RtmpVdCoUo’   ‘~/tmp/scratch/RtmpW09DeG’ ‘~/tmp/scratch/RtmpWhg4ZW’   ‘~/tmp/scratch/RtmpWs3sMI’ ‘~/tmp/scratch/RtmpXfzEA7’   ‘~/tmp/scratch/RtmpXicnqY’ ‘~/tmp/scratch/RtmpY3PeNf’   ‘~/tmp/scratch/RtmpY3nZfI’ ‘~/tmp/scratch/RtmpYGirGw’   ‘~/tmp/scratch/RtmpYUYGFX’ ‘~/tmp/scratch/RtmpYdeMx7’   ‘~/tmp/scratch/RtmpYgBVBD’ ‘~/tmp/scratch/RtmpYhRf4e’   ‘~/tmp/scratch/RtmpZUybvW’ ‘~/tmp/scratch/RtmpZhUods’   ‘~/tmp/scratch/RtmpZrMkc4’ ‘~/tmp/scratch/Rtmpa64dSc’   ‘~/tmp/scratch/RtmpaXvwMs’ ‘~/tmp/scratch/RtmpaYK4sE’   ‘~/tmp/scratch/RtmpbstN0X’ ‘~/tmp/scratch/Rtmpc7q5RV’   ‘~/tmp/scratch/Rtmpd3uL1L’ ‘~/tmp/scratch/Rtmpd5uyLy’   ‘~/tmp/scratch/RtmpdJvuSE’ ‘~/tmp/scratch/RtmpdUms3R’   ‘~/tmp/scratch/RtmpddIPnM’ ‘~/tmp/scratch/RtmpeHeemx’   ‘~/tmp/scratch/RtmpeYYJSn’ ‘~/tmp/scratch/RtmpeoFBTc’   ‘~/tmp/scratch/Rtmpfj8MON’ ‘~/tmp/scratch/RtmpfoJxlq’   ‘~/tmp/scratch/Rtmpg4MKXI’ ‘~/tmp/scratch/Rtmpg4RsfJ’   ‘~/tmp/scratch/RtmpgKgyzm’ ‘~/tmp/scratch/RtmpigdFFu’   ‘~/tmp/scratch/RtmpiltBQk’ ‘~/tmp/scratch/Rtmpix3VpV’   ‘~/tmp/scratch/RtmpjPpxag’ ‘~/tmp/scratch/RtmpjUAZ4C’   ‘~/tmp/scratch/RtmpjgjQ3O’ ‘~/tmp/scratch/RtmpjkVOzW’   ‘~/tmp/scratch/RtmplHj2AL’ ‘~/tmp/scratch/RtmplRdAyv’   ‘~/tmp/scratch/RtmplXB8CJ’ ‘~/tmp/scratch/RtmpmAqkfp’   ‘~/tmp/scratch/RtmpmHmXJ2’ ‘~/tmp/scratch/RtmpmNoIDY’   ‘~/tmp/scratch/RtmpmyrdFN’ ‘~/tmp/scratch/RtmpnEqdMV’   ‘~/tmp/scratch/RtmpnNqcUo’ ‘~/tmp/scratch/Rtmpp3I5i8’   ‘~/tmp/scratch/RtmppupSxA’ ‘~/tmp/scratch/Rtmpq7POsB’   ‘~/tmp/scratch/RtmpqYE1Dm’ ‘~/tmp/scratch/RtmpqpvU9e’   ‘~/tmp/scratch/RtmpqqRwo8’ ‘~/tmp/scratch/Rtmps2R1Tg’   ‘~/tmp/scratch/Rtmpsl1uxN’ ‘~/tmp/scratch/Rtmpsx18ib’   ‘~/tmp/scratch/Rtmpt4FzIf’ ‘~/tmp/scratch/Rtmpth94Lj’   ‘~/tmp/scratch/Rtmpts89vb’ ‘~/tmp/scratch/Rtmpu0F62X’   ‘~/tmp/scratch/RtmpuXwcbJ’ ‘~/tmp/scratch/RtmpueO6gq’   ‘~/tmp/scratch/RtmpuynlbQ’ ‘~/tmp/scratch/RtmpvKX9C7’   ‘~/tmp/scratch/RtmpvkMI9M’ ‘~/tmp/scratch/Rtmpvv7iXP’   ‘~/tmp/scratch/Rtmpw3CFSr’ ‘~/tmp/scratch/RtmpwcL1l4’   ‘~/tmp/scratch/Rtmpy1oa3e’ ‘~/tmp/scratch/Rtmpy4fnNo’   ‘~/tmp/scratch/Rtmpy9aTXB’ ‘~/tmp/scratch/RtmpyWmldZ’   ‘~/tmp/scratch/Rtmpz4vRMs’ ‘~/tmp/scratch/RtmpzeI2Uk’   ‘~/tmp/scratch/RtmpzotaIL’ ‘~/tmp/scratch/RtmpzuuksR’   ‘~/tmp/scratch/Rtmpzwc9lZ’ ‘~/tmp/scratch/ccDtwUB4.s’   ‘~/tmp/scratch/xvfb-run.1Bg7Un’ ‘~/tmp/scratch/xvfb-run.2dlq1N’   ‘~/tmp/scratch/xvfb-run.3FWlKC’ ‘~/tmp/scratch/xvfb-run.3Fo5rg’   ‘~/tmp/scratch/xvfb-run.3iMxB9’ ‘~/tmp/scratch/xvfb-run.4PpUWc’   ‘~/tmp/scratch/xvfb-run.5HMWdQ’ ‘~/tmp/scratch/xvfb-run.5lGfDr’   ‘~/tmp/scratch/xvfb-run.6HaGwQ’ ‘~/tmp/scratch/xvfb-run.7IaloR’   ‘~/tmp/scratch/xvfb-run.8Brf0l’ ‘~/tmp/scratch/xvfb-run.92fTVW’   ‘~/tmp/scratch/xvfb-run.9ZJMrC’ ‘~/tmp/scratch/xvfb-run.9ZgkZf’   ‘~/tmp/scratch/xvfb-run.B0zpU4’ ‘~/tmp/scratch/xvfb-run.DQ77lJ’   ‘~/tmp/scratch/xvfb-run.Dy6Kz6’ ‘~/tmp/scratch/xvfb-run.EDJZqN’   ‘~/tmp/scratch/xvfb-run.FPIxeH’ ‘~/tmp/scratch/xvfb-run.G64TRT’   ‘~/tmp/scratch/xvfb-run.GEgD1u’ ‘~/tmp/scratch/xvfb-run.HHKwjB’   ‘~/tmp/scratch/xvfb-run.I7Zj9a’ ‘~/tmp/scratch/xvfb-run.IJCQoE’   ‘~/tmp/scratch/xvfb-run.IfsyNP’ ‘~/tmp/scratch/xvfb-run.KBVPZ2’   ‘~/tmp/scratch/xvfb-run.Kl1aoQ’ ‘~/tmp/scratch/xvfb-run.LoKrZo’   ‘~/tmp/scratch/xvfb-run.MOK9RJ’ ‘~/tmp/scratch/xvfb-run.NhZewN’   ‘~/tmp/scratch/xvfb-run.OQPlQV’ ‘~/tmp/scratch/xvfb-run.PYSlL7’   ‘~/tmp/scratch/xvfb-run.Pv77bq’ ‘~/tmp/scratch/xvfb-run.QOkwlp’   ‘~/tmp/scratch/xvfb-run.SPEH1H’ ‘~/tmp/scratch/xvfb-run.UFRCAa’   ‘~/tmp/scratch/xvfb-run.VuoIm2’ ‘~/tmp/scratch/xvfb-run.WH1wC9’   ‘~/tmp/scratch/xvfb-run.WmQC9B’ ‘~/tmp/scratch/xvfb-run.X9ImzL’   ‘~/tmp/scratch/xvfb-run.XsvkJN’ ‘~/tmp/scratch/xvfb-run.XvtpvL’   ‘~/tmp/scratch/xvfb-run.YAskyj’ ‘~/tmp/scratch/xvfb-run.YIpkdW’   ‘~/tmp/scratch/xvfb-run.YXfnh8’ ‘~/tmp/scratch/xvfb-run.a3B351’   ‘~/tmp/scratch/xvfb-run.aPmbZ4’ ‘~/tmp/scratch/xvfb-run.b0PaEX’   ‘~/tmp/scratch/xvfb-run.bDukdO’ ‘~/tmp/scratch/xvfb-run.cHnw07’   ‘~/tmp/scratch/xvfb-run.dSPDRD’ ‘~/tmp/scratch/xvfb-run.dfPRQ4’   ‘~/tmp/scratch/xvfb-run.dkfMOy’ ‘~/tmp/scratch/xvfb-run.e3WFgZ’   ‘~/tmp/scratch/xvfb-run.g2W0Vf’ ‘~/tmp/scratch/xvfb-run.guAkbM’   ‘~/tmp/scratch/xvfb-run.gzT0K8’ ‘~/tmp/scratch/xvfb-run.kK4EDF’   ‘~/tmp/scratch/xvfb-run.mgphEM’ ‘~/tmp/scratch/xvfb-run.nw3Nvw’   ‘~/tmp/scratch/xvfb-run.oVwV7l’ ‘~/tmp/scratch/xvfb-run.pJFOyU’   ‘~/tmp/scratch/xvfb-run.tbr3Vq’ ‘~/tmp/scratch/xvfb-run.v7PRLE’   ‘~/tmp/scratch/xvfb-run.vK2uBi’ ‘~/tmp/scratch/xvfb-run.vSmaDS’   ‘~/tmp/scratch/xvfb-run.vuk2Ap’ ‘~/tmp/scratch/xvfb-run.vvaCEg’   ‘~/tmp/scratch/xvfb-run.xcQ03v’ ‘~/tmp/scratch/xvfb-run.yaJiQv’   ‘~/tmp/scratch/xvfb-run.zVe9Fv’
• DONE

Status: 1 NOTE