• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 11:50:49 UTC
• checking for file ‘GUniFrac/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘GUniFrac’ version ‘1.9’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘GUniFrac’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [3s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
• checking loading without being on the library search path ... [3s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [18s/21s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [16s/20s] OK Examples with CPU (user + system) or elapsed time > 5s               user system elapsed ZicoSeq 4.329 0.096 5.122 SimulateMSeq 3.888 0.208 5.215
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [0s/1s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0SgXOF’ ‘~/tmp/scratch/Rtmp123NBz’   ‘~/tmp/scratch/Rtmp1lA33H’ ‘~/tmp/scratch/Rtmp1p2oKj’   ‘~/tmp/scratch/Rtmp2NUJWB’ ‘~/tmp/scratch/Rtmp2odWq7’   ‘~/tmp/scratch/Rtmp3L78kI’ ‘~/tmp/scratch/Rtmp3xEn0r’   ‘~/tmp/scratch/Rtmp4squlR’ ‘~/tmp/scratch/Rtmp5Cv9Ak’   ‘~/tmp/scratch/Rtmp5Ztkok’ ‘~/tmp/scratch/Rtmp5azjRL’   ‘~/tmp/scratch/Rtmp6JGcX2’ ‘~/tmp/scratch/Rtmp6jbrCo’   ‘~/tmp/scratch/Rtmp6sHRVx’ ‘~/tmp/scratch/Rtmp8Flykk’   ‘~/tmp/scratch/Rtmp8HT0iN’ ‘~/tmp/scratch/Rtmp8R8XlT’   ‘~/tmp/scratch/Rtmp8VUNDi’ ‘~/tmp/scratch/Rtmp9ORReO’   ‘~/tmp/scratch/RtmpACtzzn’ ‘~/tmp/scratch/RtmpBJFPsE’   ‘~/tmp/scratch/RtmpBokFdu’ ‘~/tmp/scratch/RtmpBxjtL8’   ‘~/tmp/scratch/RtmpCNhDpS’ ‘~/tmp/scratch/RtmpCg0TbT’   ‘~/tmp/scratch/RtmpClwwep’ ‘~/tmp/scratch/RtmpCvT70a’   ‘~/tmp/scratch/RtmpDENQTY’ ‘~/tmp/scratch/RtmpDWcT4v’   ‘~/tmp/scratch/RtmpDcE3RE’ ‘~/tmp/scratch/RtmpDxcAxk’   ‘~/tmp/scratch/RtmpFIbRy8’ ‘~/tmp/scratch/RtmpFT2DkK’   ‘~/tmp/scratch/RtmpFjdAds’ ‘~/tmp/scratch/RtmpG2QHuX’   ‘~/tmp/scratch/RtmpGB1A8D’ ‘~/tmp/scratch/RtmpGLJ3B0’   ‘~/tmp/scratch/RtmpGpnrVR’ ‘~/tmp/scratch/RtmpHhWkqY’   ‘~/tmp/scratch/RtmpIAjP1f’ ‘~/tmp/scratch/RtmpISgGp9’   ‘~/tmp/scratch/RtmpIXNDxW’ ‘~/tmp/scratch/RtmpJRmvnE’   ‘~/tmp/scratch/RtmpJbYRsM’ ‘~/tmp/scratch/RtmpK7Tzw8’   ‘~/tmp/scratch/RtmpL6NKKd’ ‘~/tmp/scratch/RtmpLY1HYP’   ‘~/tmp/scratch/RtmpLbMs6Q’ ‘~/tmp/scratch/RtmpLsKILE’   ‘~/tmp/scratch/RtmpLxJgH8’ ‘~/tmp/scratch/RtmpLzZFS8’   ‘~/tmp/scratch/RtmpMLirKe’ ‘~/tmp/scratch/RtmpMM6Y8d’   ‘~/tmp/scratch/RtmpOoILRN’ ‘~/tmp/scratch/RtmpP2Z8ee’   ‘~/tmp/scratch/RtmpP3zeY7’ ‘~/tmp/scratch/RtmpPLZBZB’   ‘~/tmp/scratch/RtmpPTzTHa’ ‘~/tmp/scratch/RtmpQFu41I’   ‘~/tmp/scratch/RtmpQnyl1g’ ‘~/tmp/scratch/RtmpRynL8Z’   ‘~/tmp/scratch/RtmpSEuskm’ ‘~/tmp/scratch/RtmpSvIiAX’   ‘~/tmp/scratch/RtmpT2IL4T’ ‘~/tmp/scratch/RtmpTwLdc2’   ‘~/tmp/scratch/RtmpUQGiWF’ ‘~/tmp/scratch/RtmpUclUUk’   ‘~/tmp/scratch/RtmpVCrcNM’ ‘~/tmp/scratch/RtmpWWvQq1’   ‘~/tmp/scratch/RtmpWvoDrf’ ‘~/tmp/scratch/RtmpXS1L8T’   ‘~/tmp/scratch/RtmpXlyere’ ‘~/tmp/scratch/RtmpXrGBf8’   ‘~/tmp/scratch/RtmpY7rdYk’ ‘~/tmp/scratch/RtmpYK8kMX’   ‘~/tmp/scratch/RtmpYTvWb8’ ‘~/tmp/scratch/RtmpYjURYP’   ‘~/tmp/scratch/RtmpYsLXOn’ ‘~/tmp/scratch/RtmpYtufMJ’   ‘~/tmp/scratch/RtmpZFBiVs’ ‘~/tmp/scratch/Rtmpa4ahw1’   ‘~/tmp/scratch/RtmpazDMjN’ ‘~/tmp/scratch/RtmpbsQ97R’   ‘~/tmp/scratch/Rtmpco1Oz9’ ‘~/tmp/scratch/RtmpdlmzhV’   ‘~/tmp/scratch/Rtmpdv6cLO’ ‘~/tmp/scratch/RtmpfDWZ9u’   ‘~/tmp/scratch/RtmpfGa6Zt’ ‘~/tmp/scratch/RtmpfVIcjl’   ‘~/tmp/scratch/RtmpgEWHE5’ ‘~/tmp/scratch/RtmpgGLPI2’   ‘~/tmp/scratch/RtmpgMjyN9’ ‘~/tmp/scratch/Rtmpgs2yRY’   ‘~/tmp/scratch/RtmphHgRwp’ ‘~/tmp/scratch/RtmphkhIGq’   ‘~/tmp/scratch/Rtmpj4cSYi’ ‘~/tmp/scratch/Rtmpk211Db’   ‘~/tmp/scratch/RtmpkAMWUd’ ‘~/tmp/scratch/RtmplHtVQJ’   ‘~/tmp/scratch/RtmplZ1xVc’ ‘~/tmp/scratch/RtmpmNQXab’   ‘~/tmp/scratch/Rtmpn1ihf7’ ‘~/tmp/scratch/RtmpnW2t5v’   ‘~/tmp/scratch/Rtmpo80FWA’ ‘~/tmp/scratch/RtmpoE31h4’   ‘~/tmp/scratch/RtmpokYrFL’ ‘~/tmp/scratch/Rtmpoqmt6C’   ‘~/tmp/scratch/RtmppIpQBb’ ‘~/tmp/scratch/RtmppxDj8h’   ‘~/tmp/scratch/RtmpqPnuOR’ ‘~/tmp/scratch/RtmpqgaC5i’   ‘~/tmp/scratch/Rtmpsbutif’ ‘~/tmp/scratch/RtmpsnoY9t’   ‘~/tmp/scratch/Rtmptgc9C6’ ‘~/tmp/scratch/Rtmpucv6RQ’   ‘~/tmp/scratch/RtmpvUbrzg’ ‘~/tmp/scratch/Rtmpvc6iS2’   ‘~/tmp/scratch/Rtmpvc7Opk’ ‘~/tmp/scratch/Rtmpvii3ju’   ‘~/tmp/scratch/RtmpvxxOC4’ ‘~/tmp/scratch/RtmpwGNaRJ’   ‘~/tmp/scratch/Rtmpwbsis8’ ‘~/tmp/scratch/RtmpwnF7UO’   ‘~/tmp/scratch/RtmpxQEUId’ ‘~/tmp/scratch/Rtmpxd6vGd’   ‘~/tmp/scratch/RtmpxiTj9k’ ‘~/tmp/scratch/RtmpyI0vxJ’   ‘~/tmp/scratch/Rtmpz01veP’ ‘~/tmp/scratch/xvfb-run.0n0lpZ’   ‘~/tmp/scratch/xvfb-run.1OodgL’ ‘~/tmp/scratch/xvfb-run.2bu9a9’   ‘~/tmp/scratch/xvfb-run.5YLTyz’ ‘~/tmp/scratch/xvfb-run.60pPQR’   ‘~/tmp/scratch/xvfb-run.6lPYSB’ ‘~/tmp/scratch/xvfb-run.7pwUFx’   ‘~/tmp/scratch/xvfb-run.8ncMDL’ ‘~/tmp/scratch/xvfb-run.8phuto’   ‘~/tmp/scratch/xvfb-run.9pAmdR’ ‘~/tmp/scratch/xvfb-run.CMhc4A’   ‘~/tmp/scratch/xvfb-run.DUG0By’ ‘~/tmp/scratch/xvfb-run.FjB5xz’   ‘~/tmp/scratch/xvfb-run.H7pN3B’ ‘~/tmp/scratch/xvfb-run.Iw9s5q’   ‘~/tmp/scratch/xvfb-run.JZ7SSZ’ ‘~/tmp/scratch/xvfb-run.JqoBkW’   ‘~/tmp/scratch/xvfb-run.MitlyJ’ ‘~/tmp/scratch/xvfb-run.NbzMS4’   ‘~/tmp/scratch/xvfb-run.NtBxNI’ ‘~/tmp/scratch/xvfb-run.OH37lq’   ‘~/tmp/scratch/xvfb-run.OyBZuI’ ‘~/tmp/scratch/xvfb-run.PK6vLb’   ‘~/tmp/scratch/xvfb-run.PeLbYn’ ‘~/tmp/scratch/xvfb-run.QcKdKc’   ‘~/tmp/scratch/xvfb-run.REpaUh’ ‘~/tmp/scratch/xvfb-run.RHSrQu’   ‘~/tmp/scratch/xvfb-run.RYYpeu’ ‘~/tmp/scratch/xvfb-run.S8T02g’   ‘~/tmp/scratch/xvfb-run.TMlROv’ ‘~/tmp/scratch/xvfb-run.TrVqjr’   ‘~/tmp/scratch/xvfb-run.VWJjET’ ‘~/tmp/scratch/xvfb-run.XYWkQF’   ‘~/tmp/scratch/xvfb-run.XmiYe7’ ‘~/tmp/scratch/xvfb-run.Y1K8N1’   ‘~/tmp/scratch/xvfb-run.YIttZ5’ ‘~/tmp/scratch/xvfb-run.YglZoT’   ‘~/tmp/scratch/xvfb-run.aJWqUk’ ‘~/tmp/scratch/xvfb-run.aahHbm’   ‘~/tmp/scratch/xvfb-run.bJRqlj’ ‘~/tmp/scratch/xvfb-run.baJo76’   ‘~/tmp/scratch/xvfb-run.blYUsO’ ‘~/tmp/scratch/xvfb-run.esbpaA’   ‘~/tmp/scratch/xvfb-run.ex37VO’ ‘~/tmp/scratch/xvfb-run.giCZJt’   ‘~/tmp/scratch/xvfb-run.iQKkHw’ ‘~/tmp/scratch/xvfb-run.inZrEx’   ‘~/tmp/scratch/xvfb-run.lee9FG’ ‘~/tmp/scratch/xvfb-run.mXYJ1v’   ‘~/tmp/scratch/xvfb-run.n1ax80’ ‘~/tmp/scratch/xvfb-run.o8q19l’   ‘~/tmp/scratch/xvfb-run.oNBf1E’ ‘~/tmp/scratch/xvfb-run.pZveoF’   ‘~/tmp/scratch/xvfb-run.s4KXBR’ ‘~/tmp/scratch/xvfb-run.vKhYHG’   ‘~/tmp/scratch/xvfb-run.vgzHfH’ ‘~/tmp/scratch/xvfb-run.xn1JBx’   ‘~/tmp/scratch/xvfb-run.zOxzjt’ ‘~/tmp/scratch/xvfb-run.zPZ9dh’   ‘~/tmp/scratch/xvfb-run.zWlZo6’ ‘~/tmp/scratch/xvfb-run.zt8iGo’
• DONE

Status: 1 NOTE