• using R Under development (unstable) (2026-08-02 r90338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-03 11:49:59 UTC
• checking for file ‘GSDA/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘GSDA’ version ‘1.0’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Xueyuan Cao <xcao12@uthsc.edu>’ Found the following \keyword or \concept entries which likely give several index terms:   File ‘gsda.Rd’:     \keyword{association;}     \keyword{enrichment;}
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘GSDA’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/7s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0d1eKg’ ‘~/tmp/scratch/Rtmp1PHaMn’   ‘~/tmp/scratch/Rtmp1Ytbev’ ‘~/tmp/scratch/Rtmp2ui5Cm’   ‘~/tmp/scratch/Rtmp33g6at’ ‘~/tmp/scratch/Rtmp3SoTG7’   ‘~/tmp/scratch/Rtmp47RE2v’ ‘~/tmp/scratch/Rtmp48pTX1’   ‘~/tmp/scratch/Rtmp4FLqWQ’ ‘~/tmp/scratch/Rtmp4K02Kj’   ‘~/tmp/scratch/Rtmp4NGnrL’ ‘~/tmp/scratch/Rtmp4X50Ll’   ‘~/tmp/scratch/Rtmp50lXHE’ ‘~/tmp/scratch/Rtmp6nFjdr’   ‘~/tmp/scratch/Rtmp7rHUhw’ ‘~/tmp/scratch/Rtmp7tgDTh’   ‘~/tmp/scratch/Rtmp8U7gHb’ ‘~/tmp/scratch/Rtmp9HPvT8’   ‘~/tmp/scratch/Rtmp9WJkRF’ ‘~/tmp/scratch/Rtmp9dZIhW’   ‘~/tmp/scratch/RtmpA8YDhn’ ‘~/tmp/scratch/RtmpADZPjP’   ‘~/tmp/scratch/RtmpAGHBJs’ ‘~/tmp/scratch/RtmpAuUEdn’   ‘~/tmp/scratch/RtmpBQGn7V’ ‘~/tmp/scratch/RtmpBRcova’   ‘~/tmp/scratch/RtmpCq3hdK’ ‘~/tmp/scratch/RtmpCybmzh’   ‘~/tmp/scratch/RtmpE8KEUL’ ‘~/tmp/scratch/RtmpEhTubq’   ‘~/tmp/scratch/RtmpExbS8A’ ‘~/tmp/scratch/RtmpFamyuh’   ‘~/tmp/scratch/RtmpFoFuON’ ‘~/tmp/scratch/RtmpGKZiTA’   ‘~/tmp/scratch/RtmpGWRQiZ’ ‘~/tmp/scratch/RtmpHjzqyk’   ‘~/tmp/scratch/RtmpJv86aa’ ‘~/tmp/scratch/RtmpJwM0rZ’   ‘~/tmp/scratch/RtmpJyTdt5’ ‘~/tmp/scratch/RtmpJyjoAO’   ‘~/tmp/scratch/RtmpKVVBQ1’ ‘~/tmp/scratch/RtmpLBanaf’   ‘~/tmp/scratch/RtmpMewFME’ ‘~/tmp/scratch/RtmpNPdDNQ’   ‘~/tmp/scratch/RtmpOoSaCV’ ‘~/tmp/scratch/RtmpP0HiTM’   ‘~/tmp/scratch/RtmpP2nkoA’ ‘~/tmp/scratch/RtmpPRYrSS’   ‘~/tmp/scratch/RtmpPU4X4k’ ‘~/tmp/scratch/RtmpQSlw3r’   ‘~/tmp/scratch/RtmpSo60Sq’ ‘~/tmp/scratch/RtmpU4HN6e’   ‘~/tmp/scratch/RtmpV7kQoI’ ‘~/tmp/scratch/RtmpVu3RcM’   ‘~/tmp/scratch/RtmpWBNzfx’ ‘~/tmp/scratch/RtmpWaqEhN’   ‘~/tmp/scratch/RtmpWvEKl4’ ‘~/tmp/scratch/RtmpXwFBRC’   ‘~/tmp/scratch/RtmpY4wdKs’ ‘~/tmp/scratch/RtmpYGPIM8’   ‘~/tmp/scratch/RtmpYXegLC’ ‘~/tmp/scratch/RtmpYwvyUs’   ‘~/tmp/scratch/RtmpZ2xrb5’ ‘~/tmp/scratch/RtmpZNOvAH’   ‘~/tmp/scratch/RtmpZo7ZSA’ ‘~/tmp/scratch/RtmpaeRank’   ‘~/tmp/scratch/RtmpbDcH3g’ ‘~/tmp/scratch/RtmpbVQPu2’   ‘~/tmp/scratch/RtmpdDOi8G’ ‘~/tmp/scratch/RtmpdyqiYe’   ‘~/tmp/scratch/Rtmpeni2Oj’ ‘~/tmp/scratch/RtmpexOVeg’   ‘~/tmp/scratch/RtmpfT05S0’ ‘~/tmp/scratch/RtmpgWYRNd’   ‘~/tmp/scratch/RtmphOmQrU’ ‘~/tmp/scratch/RtmphVtbr9’   ‘~/tmp/scratch/RtmpiMpmeq’ ‘~/tmp/scratch/RtmpjjvQQG’   ‘~/tmp/scratch/Rtmpk8z14U’ ‘~/tmp/scratch/RtmpkL9iek’   ‘~/tmp/scratch/RtmpkZ5vPn’ ‘~/tmp/scratch/RtmplCKOn0’   ‘~/tmp/scratch/RtmplF4ijW’ ‘~/tmp/scratch/RtmplMyFOn’   ‘~/tmp/scratch/RtmplzExEK’ ‘~/tmp/scratch/Rtmpo2uLCZ’   ‘~/tmp/scratch/RtmppVOjlD’ ‘~/tmp/scratch/Rtmpq6TysT’   ‘~/tmp/scratch/RtmpqcIJAx’ ‘~/tmp/scratch/Rtmpr3JQWk’   ‘~/tmp/scratch/RtmprDNfAh’ ‘~/tmp/scratch/RtmprrQUm1’   ‘~/tmp/scratch/RtmpsjnyiQ’ ‘~/tmp/scratch/RtmpsuhT5x’   ‘~/tmp/scratch/RtmptN8n1I’ ‘~/tmp/scratch/RtmptPlCAt’   ‘~/tmp/scratch/Rtmpu37Pyk’ ‘~/tmp/scratch/RtmpwEOCYa’   ‘~/tmp/scratch/RtmpwM68aF’ ‘~/tmp/scratch/Rtmpx8jdTP’   ‘~/tmp/scratch/RtmpzUOxeb’ ‘~/tmp/scratch/RtmpzbVngO’   ‘~/tmp/scratch/xvfb-run.1MknbP’ ‘~/tmp/scratch/xvfb-run.73NIrh’   ‘~/tmp/scratch/xvfb-run.8qNtKy’ ‘~/tmp/scratch/xvfb-run.C7yxty’   ‘~/tmp/scratch/xvfb-run.E2ABVv’ ‘~/tmp/scratch/xvfb-run.FF3563’   ‘~/tmp/scratch/xvfb-run.K2W3jy’ ‘~/tmp/scratch/xvfb-run.Q5NuSQ’   ‘~/tmp/scratch/xvfb-run.TkBxqr’ ‘~/tmp/scratch/xvfb-run.UB8zE8’   ‘~/tmp/scratch/xvfb-run.WXlmar’ ‘~/tmp/scratch/xvfb-run.WpNW1l’   ‘~/tmp/scratch/xvfb-run.cp9nmh’ ‘~/tmp/scratch/xvfb-run.kSqBTO’   ‘~/tmp/scratch/xvfb-run.lgbu7B’ ‘~/tmp/scratch/xvfb-run.nlodZ4’   ‘~/tmp/scratch/xvfb-run.po1AjK’ ‘~/tmp/scratch/xvfb-run.qkAHRg’   ‘~/tmp/scratch/xvfb-run.rTPpsQ’ ‘~/tmp/scratch/xvfb-run.tZXVHD’   ‘~/tmp/scratch/xvfb-run.uTHgjB’ ‘~/tmp/scratch/xvfb-run.utaAYg’   ‘~/tmp/scratch/xvfb-run.v55M1I’ ‘~/tmp/scratch/xvfb-run.wov2gI’   ‘~/tmp/scratch/xvfb-run.xD9U1v’ ‘~/tmp/scratch/xvfb-run.xVb4S6’   ‘~/tmp/scratch/xvfb-run.zce5E5’
• DONE

Status: 2 NOTEs