Install log for 'GMKMcharlie'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘GMKMcharlie’ ...
** this is package ‘GMKMcharlie’ version ‘1.1.5’
** package ‘GMKMcharlie’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
using C++11
make[1]: Entering directory '/tmp/RtmpDkSiIe/R.INSTALL279a5812aca941/GMKMcharlie/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from RcppExports.cpp:4:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c dsConversion.cpp -o dsConversion.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/Rcpp.h:27,
                 from dsConversion.cpp:1:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gmmClassic.cpp -o gmmClassic.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from gmmClassic.cpp:12:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gmmComponentwise.cpp -o gmmComponentwise.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from gmmComponentwise.cpp:4:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gmmFJ.cpp -o gmmFJ.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from gmmFJ.cpp:4:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c km.cpp -o km.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/Rcpp.h:27,
                 from km.cpp:3:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c kmConstrained.cpp -o kmConstrained.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/Rcpp.h:27,
                 from kmConstrained.cpp:3:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c kmppini.cpp -o kmppini.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/Rcpp.h:27,
                 from kmppini.cpp:3:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sparseKm.cpp -o sparseKm.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/Rcpp.h:27,
                 from sparseKm.cpp:3:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sparseKmConstrained.cpp -o sparseKmConstrained.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/Rcpp.h:27,
                 from sparseKmConstrained.cpp:3:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o GMKMcharlie.so RcppExports.o dsConversion.o gmmClassic.o gmmComponentwise.o gmmFJ.o km.o kmConstrained.o kmppini.o sparseKm.o sparseKmConstrained.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpDkSiIe/R.INSTALL279a5812aca941/GMKMcharlie/src'
make[1]: Entering directory '/tmp/RtmpDkSiIe/R.INSTALL279a5812aca941/GMKMcharlie/src'
make[1]: Leaving directory '/tmp/RtmpDkSiIe/R.INSTALL279a5812aca941/GMKMcharlie/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-GMKMcharlie/00new/GMKMcharlie/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GMKMcharlie)