• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 11:40:45 UTC
• checking for file ‘EvoPhylo/DESCRIPTION’ ... OK
• this is package ‘EvoPhylo’ version ‘0.3.5’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘EvoPhylo’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/20s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [22s/34s] OK Examples with CPU (user + system) or elapsed time > 5s               user system elapsed make_clusters 3.46 0.013 5.327
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [96s/109s] OK
• checking PDF version of manual ... [5s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp15k8fC’ ‘~/tmp/scratch/Rtmp1Cj5mY’   ‘~/tmp/scratch/Rtmp1GU91P’ ‘~/tmp/scratch/Rtmp1K7X0A’   ‘~/tmp/scratch/Rtmp1gNBES’ ‘~/tmp/scratch/Rtmp20Dcuo’   ‘~/tmp/scratch/Rtmp2E0D8D’ ‘~/tmp/scratch/Rtmp2m8IQt’   ‘~/tmp/scratch/Rtmp3PXJw5’ ‘~/tmp/scratch/Rtmp3hslHr’   ‘~/tmp/scratch/Rtmp4FyhgQ’ ‘~/tmp/scratch/Rtmp5M4XfW’   ‘~/tmp/scratch/Rtmp5apeiM’ ‘~/tmp/scratch/Rtmp5dvsV9’   ‘~/tmp/scratch/Rtmp604lgL’ ‘~/tmp/scratch/Rtmp6CPBrY’   ‘~/tmp/scratch/Rtmp6anKim’ ‘~/tmp/scratch/Rtmp6yzUUY’   ‘~/tmp/scratch/Rtmp76lY8C’ ‘~/tmp/scratch/Rtmp7HSCDC’   ‘~/tmp/scratch/Rtmp7h77rW’ ‘~/tmp/scratch/Rtmp7ksizg’   ‘~/tmp/scratch/Rtmp7pI9g8’ ‘~/tmp/scratch/Rtmp8E6lMq’   ‘~/tmp/scratch/Rtmp8bwZJ0’ ‘~/tmp/scratch/Rtmp8i6prn’   ‘~/tmp/scratch/RtmpA5GH5c’ ‘~/tmp/scratch/RtmpA7vhBn’   ‘~/tmp/scratch/RtmpAAynnT’ ‘~/tmp/scratch/RtmpAFwis0’   ‘~/tmp/scratch/RtmpAOGCzX’ ‘~/tmp/scratch/RtmpAuiCla’   ‘~/tmp/scratch/RtmpBpWnO1’ ‘~/tmp/scratch/RtmpBzwbff’   ‘~/tmp/scratch/RtmpCCXBAq’ ‘~/tmp/scratch/RtmpCIupgT’   ‘~/tmp/scratch/RtmpCQ4uoY’ ‘~/tmp/scratch/RtmpD9Plc0’   ‘~/tmp/scratch/RtmpDQP4oU’ ‘~/tmp/scratch/RtmpE2zIuF’   ‘~/tmp/scratch/RtmpERM1Ky’ ‘~/tmp/scratch/RtmpFOpK5e’   ‘~/tmp/scratch/RtmpFZMeDo’ ‘~/tmp/scratch/RtmpFezvhT’   ‘~/tmp/scratch/RtmpFtCKWU’ ‘~/tmp/scratch/RtmpGLJQZs’   ‘~/tmp/scratch/RtmpGUYDLI’ ‘~/tmp/scratch/RtmpHAkdwM’   ‘~/tmp/scratch/RtmpHxUuG5’ ‘~/tmp/scratch/RtmpI62IpP’   ‘~/tmp/scratch/RtmpIZJuPL’ ‘~/tmp/scratch/RtmpIhA4L5’   ‘~/tmp/scratch/RtmpJC7TLU’ ‘~/tmp/scratch/RtmpK5TsZS’   ‘~/tmp/scratch/RtmpL6LwAk’ ‘~/tmp/scratch/RtmpL7bvpb’   ‘~/tmp/scratch/RtmpLOSmDg’ ‘~/tmp/scratch/RtmpLU3zjk’   ‘~/tmp/scratch/RtmpLVxMzO’ ‘~/tmp/scratch/RtmpLr9aEH’   ‘~/tmp/scratch/RtmpM7fUzA’ ‘~/tmp/scratch/RtmpMHhgdQ’   ‘~/tmp/scratch/RtmpMc9gjt’ ‘~/tmp/scratch/RtmpMgAnGn’   ‘~/tmp/scratch/RtmpMilgl2’ ‘~/tmp/scratch/RtmpMvnwNZ’   ‘~/tmp/scratch/RtmpNGwYIg’ ‘~/tmp/scratch/RtmpNSaDR5’   ‘~/tmp/scratch/RtmpNgQBSa’ ‘~/tmp/scratch/RtmpNrhZqT’   ‘~/tmp/scratch/RtmpO0Ij7X’ ‘~/tmp/scratch/RtmpO5RNga’   ‘~/tmp/scratch/RtmpPAYhhP’ ‘~/tmp/scratch/RtmpPegu9y’   ‘~/tmp/scratch/RtmpQ1MgNH’ ‘~/tmp/scratch/RtmpQGOYdJ’   ‘~/tmp/scratch/RtmpS92Axm’ ‘~/tmp/scratch/RtmpSBMUEO’   ‘~/tmp/scratch/RtmpTHt4uQ’ ‘~/tmp/scratch/RtmpTQGuA3’   ‘~/tmp/scratch/RtmpURUOEX’ ‘~/tmp/scratch/RtmpUS8V46’   ‘~/tmp/scratch/RtmpUrBoLU’ ‘~/tmp/scratch/RtmpVZEaZm’   ‘~/tmp/scratch/RtmpVi7moE’ ‘~/tmp/scratch/RtmpVzRJzG’   ‘~/tmp/scratch/RtmpWPMB77’ ‘~/tmp/scratch/RtmpWj1tr0’   ‘~/tmp/scratch/RtmpXII0uo’ ‘~/tmp/scratch/RtmpYCYHZK’   ‘~/tmp/scratch/RtmpYmcXZ1’ ‘~/tmp/scratch/RtmpYpfBIs’   ‘~/tmp/scratch/RtmpZJqjLY’ ‘~/tmp/scratch/RtmpZVAHHz’   ‘~/tmp/scratch/RtmpZhEQhN’ ‘~/tmp/scratch/RtmpaiycTz’   ‘~/tmp/scratch/RtmpbRkF3b’ ‘~/tmp/scratch/Rtmpbudcta’   ‘~/tmp/scratch/Rtmpc7uhdL’ ‘~/tmp/scratch/RtmpcLO6Vu’   ‘~/tmp/scratch/RtmpchyFgT’ ‘~/tmp/scratch/Rtmpd6U8KU’   ‘~/tmp/scratch/RtmpdQ3C46’ ‘~/tmp/scratch/Rtmpdtu03c’   ‘~/tmp/scratch/Rtmpen0xdG’ ‘~/tmp/scratch/RtmpesrsSb’   ‘~/tmp/scratch/Rtmpf8Jfsh’ ‘~/tmp/scratch/RtmpfSbB6t’   ‘~/tmp/scratch/RtmpgNoaEF’ ‘~/tmp/scratch/RtmpgRoGfh’   ‘~/tmp/scratch/Rtmph4b6MD’ ‘~/tmp/scratch/Rtmph5OklH’   ‘~/tmp/scratch/RtmphJazcH’ ‘~/tmp/scratch/RtmphSVodo’   ‘~/tmp/scratch/RtmphXV6Xr’ ‘~/tmp/scratch/Rtmphdt72I’   ‘~/tmp/scratch/Rtmphyrr8u’ ‘~/tmp/scratch/RtmphzktMq’   ‘~/tmp/scratch/Rtmpi0c6BW’ ‘~/tmp/scratch/RtmpiIkpUQ’   ‘~/tmp/scratch/Rtmpigm1Iy’ ‘~/tmp/scratch/RtmpivfJwo’   ‘~/tmp/scratch/RtmpkImgZz’ ‘~/tmp/scratch/Rtmpkp4nu9’   ‘~/tmp/scratch/RtmpkqMClW’ ‘~/tmp/scratch/Rtmpkt6q0Q’   ‘~/tmp/scratch/RtmplKFUP2’ ‘~/tmp/scratch/RtmplPTIGa’   ‘~/tmp/scratch/RtmplPkQ9g’ ‘~/tmp/scratch/RtmpmNBYdq’   ‘~/tmp/scratch/Rtmpmr8Yqk’ ‘~/tmp/scratch/RtmpnqtI3m’   ‘~/tmp/scratch/Rtmpo5tGJO’ ‘~/tmp/scratch/RtmpoisUsi’   ‘~/tmp/scratch/RtmpomjThh’ ‘~/tmp/scratch/Rtmpp7ojVG’   ‘~/tmp/scratch/RtmppXJtp6’ ‘~/tmp/scratch/RtmpppD41P’   ‘~/tmp/scratch/Rtmpq80MTg’ ‘~/tmp/scratch/Rtmprfstja’   ‘~/tmp/scratch/Rtmprfv9DA’ ‘~/tmp/scratch/RtmpsTn8u0’   ‘~/tmp/scratch/Rtmpssnak6’ ‘~/tmp/scratch/Rtmpsv4eVs’   ‘~/tmp/scratch/Rtmpsx5kt2’ ‘~/tmp/scratch/Rtmpt1iVIl’   ‘~/tmp/scratch/RtmptMYYkT’ ‘~/tmp/scratch/Rtmpv0kWaA’   ‘~/tmp/scratch/RtmpvB7KU0’ ‘~/tmp/scratch/RtmpvtgYWg’   ‘~/tmp/scratch/RtmpwRsXyq’ ‘~/tmp/scratch/RtmpwgP6G9’   ‘~/tmp/scratch/RtmpwlRhu3’ ‘~/tmp/scratch/RtmpxHOATp’   ‘~/tmp/scratch/RtmpxKo3pn’ ‘~/tmp/scratch/RtmpxVtRje’   ‘~/tmp/scratch/RtmpxmlMzg’ ‘~/tmp/scratch/Rtmpy3gmUE’   ‘~/tmp/scratch/RtmpznbtEm’ ‘~/tmp/scratch/xvfb-run.24mbzr’   ‘~/tmp/scratch/xvfb-run.3LcM2A’ ‘~/tmp/scratch/xvfb-run.3bngeC’   ‘~/tmp/scratch/xvfb-run.5wSPa3’ ‘~/tmp/scratch/xvfb-run.8qBQph’   ‘~/tmp/scratch/xvfb-run.APyI5P’ ‘~/tmp/scratch/xvfb-run.BD03d7’   ‘~/tmp/scratch/xvfb-run.CPABTP’ ‘~/tmp/scratch/xvfb-run.CYeCy1’   ‘~/tmp/scratch/xvfb-run.DBC4YW’ ‘~/tmp/scratch/xvfb-run.DOmQ6A’   ‘~/tmp/scratch/xvfb-run.Da6tEl’ ‘~/tmp/scratch/xvfb-run.E4bWcp’   ‘~/tmp/scratch/xvfb-run.FQovM2’ ‘~/tmp/scratch/xvfb-run.Gzqtjr’   ‘~/tmp/scratch/xvfb-run.HMcPOE’ ‘~/tmp/scratch/xvfb-run.JSiEkJ’   ‘~/tmp/scratch/xvfb-run.JrKjq7’ ‘~/tmp/scratch/xvfb-run.LU3htE’   ‘~/tmp/scratch/xvfb-run.M9QVQq’ ‘~/tmp/scratch/xvfb-run.MKrUEL’   ‘~/tmp/scratch/xvfb-run.OBLPes’ ‘~/tmp/scratch/xvfb-run.Pn21zw’   ‘~/tmp/scratch/xvfb-run.RQoMGU’ ‘~/tmp/scratch/xvfb-run.S3zC3U’   ‘~/tmp/scratch/xvfb-run.T708l6’ ‘~/tmp/scratch/xvfb-run.TVVvJG’   ‘~/tmp/scratch/xvfb-run.UKllP1’ ‘~/tmp/scratch/xvfb-run.Vgx3Y1’   ‘~/tmp/scratch/xvfb-run.WDbOFI’ ‘~/tmp/scratch/xvfb-run.Wnc4DA’   ‘~/tmp/scratch/xvfb-run.WyXch3’ ‘~/tmp/scratch/xvfb-run.XicjB2’   ‘~/tmp/scratch/xvfb-run.Ypa1NY’ ‘~/tmp/scratch/xvfb-run.Z4BC0A’   ‘~/tmp/scratch/xvfb-run.aF9g5Y’ ‘~/tmp/scratch/xvfb-run.bHQDxa’   ‘~/tmp/scratch/xvfb-run.bzxjAL’ ‘~/tmp/scratch/xvfb-run.cJ7TbG’   ‘~/tmp/scratch/xvfb-run.cU1IdD’ ‘~/tmp/scratch/xvfb-run.d2mug1’   ‘~/tmp/scratch/xvfb-run.dcAm33’ ‘~/tmp/scratch/xvfb-run.fD3MER’   ‘~/tmp/scratch/xvfb-run.gxz5vK’ ‘~/tmp/scratch/xvfb-run.iyxq0v’   ‘~/tmp/scratch/xvfb-run.j6hei0’ ‘~/tmp/scratch/xvfb-run.jFXeoB’   ‘~/tmp/scratch/xvfb-run.jhbA2P’ ‘~/tmp/scratch/xvfb-run.lPKPUa’   ‘~/tmp/scratch/xvfb-run.oezBjk’ ‘~/tmp/scratch/xvfb-run.p6YVqI’   ‘~/tmp/scratch/xvfb-run.pFMV3T’ ‘~/tmp/scratch/xvfb-run.pxTFn1’   ‘~/tmp/scratch/xvfb-run.pyIwAl’ ‘~/tmp/scratch/xvfb-run.qZerXz’   ‘~/tmp/scratch/xvfb-run.r1tzcJ’ ‘~/tmp/scratch/xvfb-run.rF8pIx’   ‘~/tmp/scratch/xvfb-run.rFovoe’ ‘~/tmp/scratch/xvfb-run.sTDDhU’   ‘~/tmp/scratch/xvfb-run.syQif3’ ‘~/tmp/scratch/xvfb-run.uqe8NN’   ‘~/tmp/scratch/xvfb-run.v0Vx7I’ ‘~/tmp/scratch/xvfb-run.vhrMtQ’   ‘~/tmp/scratch/xvfb-run.w72ToR’ ‘~/tmp/scratch/xvfb-run.wVLdHk’   ‘~/tmp/scratch/xvfb-run.wmy36C’ ‘~/tmp/scratch/xvfb-run.yb9JdH’   ‘~/tmp/scratch/xvfb-run.zGvftd’ ‘~/tmp/scratch/xvfb-run.zlKiwG’
• DONE

Status: 1 NOTE