• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 11:39:57 UTC
• checking for file ‘EpidigiR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘EpidigiR’ version ‘0.1.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘EpidigiR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/4s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [5s/5s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [3s/3s] OK   Running ‘testthat.R’ [2s/3s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [8s/10s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0Gf9v2’ ‘~/tmp/scratch/Rtmp1N3wx4’   ‘~/tmp/scratch/Rtmp2J0la3’ ‘~/tmp/scratch/Rtmp2wepzx’   ‘~/tmp/scratch/Rtmp39jeM4’ ‘~/tmp/scratch/Rtmp3Tkj70’   ‘~/tmp/scratch/Rtmp3UD0wF’ ‘~/tmp/scratch/Rtmp4b8616’   ‘~/tmp/scratch/Rtmp4g29Fu’ ‘~/tmp/scratch/Rtmp552Q7V’   ‘~/tmp/scratch/Rtmp55dmOS’ ‘~/tmp/scratch/Rtmp59SgPy’   ‘~/tmp/scratch/Rtmp5LTQMB’ ‘~/tmp/scratch/Rtmp5SyfHV’   ‘~/tmp/scratch/Rtmp6Api2q’ ‘~/tmp/scratch/Rtmp6DFTp3’   ‘~/tmp/scratch/Rtmp6fAypf’ ‘~/tmp/scratch/Rtmp6gTQnJ’   ‘~/tmp/scratch/Rtmp6gupiJ’ ‘~/tmp/scratch/Rtmp7UeXTO’   ‘~/tmp/scratch/Rtmp7jgTlk’ ‘~/tmp/scratch/Rtmp89LQzD’   ‘~/tmp/scratch/Rtmp8RUD38’ ‘~/tmp/scratch/Rtmp95Jabt’   ‘~/tmp/scratch/Rtmp9JP1Uj’ ‘~/tmp/scratch/Rtmp9QUVkx’   ‘~/tmp/scratch/RtmpAV7bGx’ ‘~/tmp/scratch/RtmpAZPuOw’   ‘~/tmp/scratch/RtmpAm7XiN’ ‘~/tmp/scratch/RtmpBNcM3x’   ‘~/tmp/scratch/RtmpBXFTSS’ ‘~/tmp/scratch/RtmpBvCLd0’   ‘~/tmp/scratch/RtmpCCDED6’ ‘~/tmp/scratch/RtmpCLq6kh’   ‘~/tmp/scratch/RtmpCPjS2f’ ‘~/tmp/scratch/RtmpDIX8Gc’   ‘~/tmp/scratch/RtmpDeo810’ ‘~/tmp/scratch/RtmpDiGANp’   ‘~/tmp/scratch/RtmpE0xfhZ’ ‘~/tmp/scratch/RtmpEWshWn’   ‘~/tmp/scratch/RtmpF2ewOw’ ‘~/tmp/scratch/RtmpFBtFCh’   ‘~/tmp/scratch/RtmpGZ66BL’ ‘~/tmp/scratch/RtmpGeIWqD’   ‘~/tmp/scratch/RtmpGm0HYA’ ‘~/tmp/scratch/RtmpI48WGV’   ‘~/tmp/scratch/RtmpI6iogY’ ‘~/tmp/scratch/RtmpIBGh4v’   ‘~/tmp/scratch/RtmpIlmzuT’ ‘~/tmp/scratch/RtmpIrYSRn’   ‘~/tmp/scratch/RtmpIuh01A’ ‘~/tmp/scratch/RtmpJ0e0Oy’   ‘~/tmp/scratch/RtmpJR0Omf’ ‘~/tmp/scratch/RtmpJZrl5S’   ‘~/tmp/scratch/RtmpJd108e’ ‘~/tmp/scratch/RtmpJo1EEn’   ‘~/tmp/scratch/RtmpJqXHlS’ ‘~/tmp/scratch/RtmpKRvhs5’   ‘~/tmp/scratch/RtmpKn5nMr’ ‘~/tmp/scratch/RtmpLXDWpI’   ‘~/tmp/scratch/RtmpLrinTw’ ‘~/tmp/scratch/RtmpMfDnlN’   ‘~/tmp/scratch/RtmpNyInER’ ‘~/tmp/scratch/RtmpO4tB6I’   ‘~/tmp/scratch/RtmpONieuE’ ‘~/tmp/scratch/RtmpOh7Dum’   ‘~/tmp/scratch/RtmpPfBOTH’ ‘~/tmp/scratch/RtmpQD41jq’   ‘~/tmp/scratch/RtmpQe9K2H’ ‘~/tmp/scratch/RtmpQs6kHE’   ‘~/tmp/scratch/RtmpROosat’ ‘~/tmp/scratch/RtmpRwFnkv’   ‘~/tmp/scratch/RtmpT8ZpN9’ ‘~/tmp/scratch/RtmpT9KtOu’   ‘~/tmp/scratch/RtmpT9QMr7’ ‘~/tmp/scratch/RtmpTDSCSe’   ‘~/tmp/scratch/RtmpTWkrbe’ ‘~/tmp/scratch/RtmpUUeuKh’   ‘~/tmp/scratch/RtmpVCipDd’ ‘~/tmp/scratch/RtmpWDgZGc’   ‘~/tmp/scratch/RtmpWLxPok’ ‘~/tmp/scratch/RtmpWN3aeI’   ‘~/tmp/scratch/RtmpWubLnU’ ‘~/tmp/scratch/RtmpXRYuDJ’   ‘~/tmp/scratch/RtmpXpWwgr’ ‘~/tmp/scratch/RtmpXqrRUJ’   ‘~/tmp/scratch/RtmpYEi51z’ ‘~/tmp/scratch/RtmpYIB5wg’   ‘~/tmp/scratch/RtmpYIv8Kx’ ‘~/tmp/scratch/RtmpYRQb8K’   ‘~/tmp/scratch/RtmpZPRdtt’ ‘~/tmp/scratch/RtmpaDT2hT’   ‘~/tmp/scratch/RtmpaJI3je’ ‘~/tmp/scratch/Rtmpabo2Cc’   ‘~/tmp/scratch/Rtmpaeqts5’ ‘~/tmp/scratch/Rtmpaj6Dvm’   ‘~/tmp/scratch/Rtmpas9QIz’ ‘~/tmp/scratch/RtmpbJjC7O’   ‘~/tmp/scratch/Rtmpd6LWZu’ ‘~/tmp/scratch/Rtmpdjpc8E’   ‘~/tmp/scratch/RtmpdncN9l’ ‘~/tmp/scratch/Rtmpega9E5’   ‘~/tmp/scratch/RtmpehavLp’ ‘~/tmp/scratch/Rtmpejinan’   ‘~/tmp/scratch/RtmpfHcwbx’ ‘~/tmp/scratch/RtmpfeWS5l’   ‘~/tmp/scratch/RtmpgpNDvK’ ‘~/tmp/scratch/RtmphClSZK’   ‘~/tmp/scratch/RtmphWpd3N’ ‘~/tmp/scratch/RtmphXV6Xr’   ‘~/tmp/scratch/RtmphxwaSi’ ‘~/tmp/scratch/RtmpihxgfF’   ‘~/tmp/scratch/RtmpinegNe’ ‘~/tmp/scratch/RtmpjRe7sn’   ‘~/tmp/scratch/RtmpjfWoeo’ ‘~/tmp/scratch/RtmpjnQ2TC’   ‘~/tmp/scratch/RtmpjreDJZ’ ‘~/tmp/scratch/RtmpkHZ9C9’   ‘~/tmp/scratch/RtmpkZkc2G’ ‘~/tmp/scratch/RtmplYsncF’   ‘~/tmp/scratch/Rtmpla73k0’ ‘~/tmp/scratch/Rtmpmpoqro’   ‘~/tmp/scratch/Rtmpn1g6Sb’ ‘~/tmp/scratch/RtmpoMdMHy’   ‘~/tmp/scratch/RtmpoiQjUG’ ‘~/tmp/scratch/RtmppcVHxV’   ‘~/tmp/scratch/RtmpqU4y33’ ‘~/tmp/scratch/RtmpqUgin9’   ‘~/tmp/scratch/Rtmpqv4KjD’ ‘~/tmp/scratch/Rtmprey4KR’   ‘~/tmp/scratch/Rtmprmwh0h’ ‘~/tmp/scratch/RtmprnjcXN’   ‘~/tmp/scratch/Rtmpru8CXw’ ‘~/tmp/scratch/RtmpsRN8sr’   ‘~/tmp/scratch/RtmptKpy1m’ ‘~/tmp/scratch/RtmptdzjoI’   ‘~/tmp/scratch/RtmptyNCH8’ ‘~/tmp/scratch/Rtmpu28JJp’   ‘~/tmp/scratch/RtmpuNdPSl’ ‘~/tmp/scratch/RtmpuQf9se’   ‘~/tmp/scratch/RtmpuVdz0g’ ‘~/tmp/scratch/RtmpvFudZJ’   ‘~/tmp/scratch/RtmpvHc8fF’ ‘~/tmp/scratch/RtmpvRkeOL’   ‘~/tmp/scratch/RtmpvmWofC’ ‘~/tmp/scratch/Rtmpw0kH8R’   ‘~/tmp/scratch/RtmpwMAf6L’ ‘~/tmp/scratch/RtmpwSokZY’   ‘~/tmp/scratch/Rtmpx2kbzT’ ‘~/tmp/scratch/Rtmpx8CEqI’   ‘~/tmp/scratch/Rtmpxzodc9’ ‘~/tmp/scratch/RtmpyUwAIT’   ‘~/tmp/scratch/RtmpyWSfCm’ ‘~/tmp/scratch/RtmpzFmKDn’   ‘~/tmp/scratch/RtmpzG8Meh’ ‘~/tmp/scratch/RtmpzoCVIO’   ‘~/tmp/scratch/RtmpzsMXgg’ ‘~/tmp/scratch/xvfb-run.1xKMup’   ‘~/tmp/scratch/xvfb-run.3Jge5T’ ‘~/tmp/scratch/xvfb-run.7R6o4q’   ‘~/tmp/scratch/xvfb-run.9VW2f4’ ‘~/tmp/scratch/xvfb-run.9lu9Js’   ‘~/tmp/scratch/xvfb-run.Csfkfe’ ‘~/tmp/scratch/xvfb-run.DqmySc’   ‘~/tmp/scratch/xvfb-run.DuJwIH’ ‘~/tmp/scratch/xvfb-run.EJzCiH’   ‘~/tmp/scratch/xvfb-run.ErbBmU’ ‘~/tmp/scratch/xvfb-run.Fv9nuQ’   ‘~/tmp/scratch/xvfb-run.I1n5fm’ ‘~/tmp/scratch/xvfb-run.Mw6twS’   ‘~/tmp/scratch/xvfb-run.OEBkAi’ ‘~/tmp/scratch/xvfb-run.P1U9uX’   ‘~/tmp/scratch/xvfb-run.R8sBWc’ ‘~/tmp/scratch/xvfb-run.RKQxYq’   ‘~/tmp/scratch/xvfb-run.TLIqaq’ ‘~/tmp/scratch/xvfb-run.W1sNiM’   ‘~/tmp/scratch/xvfb-run.XWs9RL’ ‘~/tmp/scratch/xvfb-run.Zrt79D’   ‘~/tmp/scratch/xvfb-run.cC7Ern’ ‘~/tmp/scratch/xvfb-run.dMgJSv’   ‘~/tmp/scratch/xvfb-run.eNswyA’ ‘~/tmp/scratch/xvfb-run.fe2s1v’   ‘~/tmp/scratch/xvfb-run.jaa6VZ’ ‘~/tmp/scratch/xvfb-run.jgROIo’   ‘~/tmp/scratch/xvfb-run.mhMel0’ ‘~/tmp/scratch/xvfb-run.odBCHu’   ‘~/tmp/scratch/xvfb-run.t2p4pA’ ‘~/tmp/scratch/xvfb-run.trWTgj’   ‘~/tmp/scratch/xvfb-run.ugGcyH’ ‘~/tmp/scratch/xvfb-run.zuxQfh’
• DONE

Status: 1 NOTE