• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 11:40:27 UTC
• checking for file ‘EpidigiR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘EpidigiR’ version ‘0.1.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘EpidigiR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/5s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [6s/7s] OK Examples with CPU (user + system) or elapsed time > 5s               user system elapsed clinical_data 4.09 0.527 5.754
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [3s/3s] OK   Running ‘testthat.R’ [3s/3s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [9s/13s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0U3H8s’ ‘~/tmp/scratch/Rtmp0taF1Z’   ‘~/tmp/scratch/Rtmp0yBt5w’ ‘~/tmp/scratch/Rtmp2YJxB1’   ‘~/tmp/scratch/Rtmp2ux47z’ ‘~/tmp/scratch/Rtmp3Qqf16’   ‘~/tmp/scratch/Rtmp45YtYY’ ‘~/tmp/scratch/Rtmp4VSqTf’   ‘~/tmp/scratch/Rtmp5b8hOf’ ‘~/tmp/scratch/Rtmp6XnB87’   ‘~/tmp/scratch/Rtmp6lYw2g’ ‘~/tmp/scratch/Rtmp74DR25’   ‘~/tmp/scratch/Rtmp7Zu7nT’ ‘~/tmp/scratch/Rtmp7gcnkh’   ‘~/tmp/scratch/Rtmp7lukt6’ ‘~/tmp/scratch/Rtmp8uza9Y’   ‘~/tmp/scratch/Rtmp909Rcl’ ‘~/tmp/scratch/Rtmp9sUGcb’   ‘~/tmp/scratch/RtmpACRNJZ’ ‘~/tmp/scratch/RtmpBDyQ44’   ‘~/tmp/scratch/RtmpBHz2d2’ ‘~/tmp/scratch/RtmpBl8lvS’   ‘~/tmp/scratch/RtmpBxchrq’ ‘~/tmp/scratch/RtmpByUlW8’   ‘~/tmp/scratch/RtmpBzMMCK’ ‘~/tmp/scratch/RtmpCP018B’   ‘~/tmp/scratch/RtmpCXixI1’ ‘~/tmp/scratch/RtmpCzaJ3i’   ‘~/tmp/scratch/RtmpDOhq1E’ ‘~/tmp/scratch/RtmpDVx6vJ’   ‘~/tmp/scratch/RtmpE2V2ot’ ‘~/tmp/scratch/RtmpFcJXKv’   ‘~/tmp/scratch/RtmpFi8rwC’ ‘~/tmp/scratch/RtmpFxIsPU’   ‘~/tmp/scratch/RtmpG2VJjE’ ‘~/tmp/scratch/RtmpGMzRHp’   ‘~/tmp/scratch/RtmpGo0INB’ ‘~/tmp/scratch/RtmpH0VlYH’   ‘~/tmp/scratch/RtmpHhF2rR’ ‘~/tmp/scratch/RtmpHpebT5’   ‘~/tmp/scratch/RtmpIHiSEv’ ‘~/tmp/scratch/RtmpITG9h5’   ‘~/tmp/scratch/RtmpIVpVdX’ ‘~/tmp/scratch/RtmpIiCgyY’   ‘~/tmp/scratch/RtmpImcONR’ ‘~/tmp/scratch/RtmpJA1FvG’   ‘~/tmp/scratch/RtmpJGrrwT’ ‘~/tmp/scratch/RtmpJMc76L’   ‘~/tmp/scratch/RtmpJWvOMT’ ‘~/tmp/scratch/RtmpJZXf9M’   ‘~/tmp/scratch/RtmpJg8Nsq’ ‘~/tmp/scratch/RtmpJp7BAd’   ‘~/tmp/scratch/RtmpKj7Gwm’ ‘~/tmp/scratch/RtmpLPrxa0’   ‘~/tmp/scratch/RtmpLUkSy5’ ‘~/tmp/scratch/RtmpMDIgUe’   ‘~/tmp/scratch/RtmpMVBTfJ’ ‘~/tmp/scratch/RtmpMaHhba’   ‘~/tmp/scratch/RtmpMfyE0J’ ‘~/tmp/scratch/RtmpMqzH1w’   ‘~/tmp/scratch/RtmpN3Luwa’ ‘~/tmp/scratch/RtmpNVdSoV’   ‘~/tmp/scratch/RtmpOU7i9S’ ‘~/tmp/scratch/RtmpPC6UnL’   ‘~/tmp/scratch/RtmpPIqRbc’ ‘~/tmp/scratch/RtmpPu70pk’   ‘~/tmp/scratch/RtmpQ7PZs6’ ‘~/tmp/scratch/RtmpQBvV7i’   ‘~/tmp/scratch/RtmpQCFNVd’ ‘~/tmp/scratch/RtmpQEzBuM’   ‘~/tmp/scratch/RtmpQOJ5KE’ ‘~/tmp/scratch/RtmpRwQrbK’   ‘~/tmp/scratch/RtmpS1Heg3’ ‘~/tmp/scratch/RtmpSO7sQC’   ‘~/tmp/scratch/RtmpSX08sr’ ‘~/tmp/scratch/RtmpSnlqHc’   ‘~/tmp/scratch/RtmpUQrOHd’ ‘~/tmp/scratch/RtmpURbPO5’   ‘~/tmp/scratch/RtmpUzQwGP’ ‘~/tmp/scratch/RtmpVKHNUZ’   ‘~/tmp/scratch/RtmpVXyGkP’ ‘~/tmp/scratch/RtmpVfKAKk’   ‘~/tmp/scratch/RtmpVqa7Y2’ ‘~/tmp/scratch/RtmpWHBmWu’   ‘~/tmp/scratch/RtmpWxkTSy’ ‘~/tmp/scratch/RtmpX88dxw’   ‘~/tmp/scratch/RtmpXQ0dFO’ ‘~/tmp/scratch/RtmpXW7nNf’   ‘~/tmp/scratch/RtmpXXYVcZ’ ‘~/tmp/scratch/RtmpXi4lcz’   ‘~/tmp/scratch/RtmpXqOuRZ’ ‘~/tmp/scratch/RtmpY3FltJ’   ‘~/tmp/scratch/RtmpYRHYZZ’ ‘~/tmp/scratch/RtmpYTRGdg’   ‘~/tmp/scratch/RtmpYWHSwl’ ‘~/tmp/scratch/RtmpYfMpHu’   ‘~/tmp/scratch/RtmpZ2pRMc’ ‘~/tmp/scratch/RtmpZ5JZrB’   ‘~/tmp/scratch/RtmpZKWnvV’ ‘~/tmp/scratch/RtmpZMqVdP’   ‘~/tmp/scratch/RtmpZOmvAL’ ‘~/tmp/scratch/RtmpZtFWWr’   ‘~/tmp/scratch/RtmpZyrr94’ ‘~/tmp/scratch/RtmpacKgX9’   ‘~/tmp/scratch/Rtmpaiax9E’ ‘~/tmp/scratch/RtmpapUVia’   ‘~/tmp/scratch/Rtmpb7ngnH’ ‘~/tmp/scratch/RtmpbJ3xQH’   ‘~/tmp/scratch/RtmpbzmI0d’ ‘~/tmp/scratch/Rtmpc3wjlT’   ‘~/tmp/scratch/RtmpcOZsnu’ ‘~/tmp/scratch/RtmpdZ5XsA’   ‘~/tmp/scratch/RtmpdhzkoS’ ‘~/tmp/scratch/Rtmpdn2wUK’   ‘~/tmp/scratch/RtmpfhSanL’ ‘~/tmp/scratch/RtmpfhVjAy’   ‘~/tmp/scratch/Rtmpg6CvMr’ ‘~/tmp/scratch/RtmpgfLu4y’   ‘~/tmp/scratch/RtmphS4UcB’ ‘~/tmp/scratch/RtmphoJSyC’   ‘~/tmp/scratch/RtmphtT3BY’ ‘~/tmp/scratch/RtmpiHmay4’   ‘~/tmp/scratch/RtmpiVZlhY’ ‘~/tmp/scratch/RtmpiYqT4S’   ‘~/tmp/scratch/RtmpjcA9OU’ ‘~/tmp/scratch/Rtmpjui30b’   ‘~/tmp/scratch/RtmpkBkRKS’ ‘~/tmp/scratch/RtmpkaEGYg’   ‘~/tmp/scratch/RtmplhVsGz’ ‘~/tmp/scratch/Rtmpm2Tiq1’   ‘~/tmp/scratch/Rtmpm3uVS5’ ‘~/tmp/scratch/RtmpmMLAwe’   ‘~/tmp/scratch/RtmpmoDBe9’ ‘~/tmp/scratch/RtmpnDiadP’   ‘~/tmp/scratch/RtmpoBREZq’ ‘~/tmp/scratch/RtmpoH4Nlc’   ‘~/tmp/scratch/RtmpoHexO7’ ‘~/tmp/scratch/RtmpozR6KS’   ‘~/tmp/scratch/RtmppH90Cf’ ‘~/tmp/scratch/RtmppPHcq1’   ‘~/tmp/scratch/RtmppYxnkp’ ‘~/tmp/scratch/RtmpplkZGD’   ‘~/tmp/scratch/RtmpppL46u’ ‘~/tmp/scratch/RtmpqDVc7F’   ‘~/tmp/scratch/RtmpqtXRou’ ‘~/tmp/scratch/RtmprTM11X’   ‘~/tmp/scratch/RtmprpGSou’ ‘~/tmp/scratch/Rtmprzil6S’   ‘~/tmp/scratch/RtmpsBzkRN’ ‘~/tmp/scratch/RtmptoRkDn’   ‘~/tmp/scratch/Rtmpu5d5XQ’ ‘~/tmp/scratch/Rtmputx7cU’   ‘~/tmp/scratch/RtmpvtGcFq’ ‘~/tmp/scratch/Rtmpw6GeU3’   ‘~/tmp/scratch/Rtmpw9NMly’ ‘~/tmp/scratch/RtmpwppCwd’   ‘~/tmp/scratch/Rtmpwws2y5’ ‘~/tmp/scratch/RtmpwzgPVv’   ‘~/tmp/scratch/RtmpxFcEqz’ ‘~/tmp/scratch/RtmpxQ29o8’   ‘~/tmp/scratch/Rtmpxfbqo5’ ‘~/tmp/scratch/RtmpxwO9t8’   ‘~/tmp/scratch/RtmpyBdYjy’ ‘~/tmp/scratch/RtmpyEk4up’   ‘~/tmp/scratch/RtmpyJBMyW’ ‘~/tmp/scratch/RtmpyZvKVx’   ‘~/tmp/scratch/RtmpyjFd8N’ ‘~/tmp/scratch/RtmpzA2MyW’   ‘~/tmp/scratch/RtmpzW0O0k’ ‘~/tmp/scratch/RtmpzoGKJn’   ‘~/tmp/scratch/RtmpzucK0H’ ‘~/tmp/scratch/xvfb-run.1ds6Xw’   ‘~/tmp/scratch/xvfb-run.2Co8sq’ ‘~/tmp/scratch/xvfb-run.544P6V’   ‘~/tmp/scratch/xvfb-run.5wFzsT’ ‘~/tmp/scratch/xvfb-run.8lmekz’   ‘~/tmp/scratch/xvfb-run.9hCP2X’ ‘~/tmp/scratch/xvfb-run.CG79Kx’   ‘~/tmp/scratch/xvfb-run.DIY0qS’ ‘~/tmp/scratch/xvfb-run.DjIyMF’   ‘~/tmp/scratch/xvfb-run.EpYtHO’ ‘~/tmp/scratch/xvfb-run.F5mcYH’   ‘~/tmp/scratch/xvfb-run.PDXl6w’ ‘~/tmp/scratch/xvfb-run.Q2qmWF’   ‘~/tmp/scratch/xvfb-run.TY6S96’ ‘~/tmp/scratch/xvfb-run.ToyBHX’   ‘~/tmp/scratch/xvfb-run.VoRJ86’ ‘~/tmp/scratch/xvfb-run.Z4imX5’   ‘~/tmp/scratch/xvfb-run.cIEaxO’ ‘~/tmp/scratch/xvfb-run.hDtDYS’   ‘~/tmp/scratch/xvfb-run.hSDcdM’ ‘~/tmp/scratch/xvfb-run.mH5Wfg’   ‘~/tmp/scratch/xvfb-run.nMhtus’ ‘~/tmp/scratch/xvfb-run.nfg4ou’   ‘~/tmp/scratch/xvfb-run.ohTGZQ’ ‘~/tmp/scratch/xvfb-run.p67ylY’   ‘~/tmp/scratch/xvfb-run.rNGQgx’ ‘~/tmp/scratch/xvfb-run.s9WcMV’   ‘~/tmp/scratch/xvfb-run.sL9b90’ ‘~/tmp/scratch/xvfb-run.sWYbMI’   ‘~/tmp/scratch/xvfb-run.tA2hLC’ ‘~/tmp/scratch/xvfb-run.tbKpEE’   ‘~/tmp/scratch/xvfb-run.uIBvcs’ ‘~/tmp/scratch/xvfb-run.vtO9pq’   ‘~/tmp/scratch/xvfb-run.wYUgQT’ ‘~/tmp/scratch/xvfb-run.xbF08R’   ‘~/tmp/scratch/xvfb-run.xe9zQn’
• DONE

Status: 1 NOTE