- using R Under development (unstable) (2023-12-04 r85659)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.2.0-7) 13.2.0
GNU Fortran (Debian 13.2.0-7) 13.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘Epi/DESCRIPTION’ ... OK
- this is package ‘Epi’ version ‘2.47.1’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘Epi’ can be installed ... OK
See the install log for details.
- used C compiler: ‘gcc-13 (Debian 13.2.0-7) 13.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/4s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/5s] OK
- checking whether the package can be unloaded cleanly ... [2s/4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/5s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/5s] OK
- checking loading without being on the library search path ... [3s/5s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [46s/75s] OK
- checking Rd files ... [1s/2s] NOTE
checkRd: (-1) LCa.fit.Rd:151: Lost braces
151 | \code{pi} (\code{p}eriod code{i}nteraction) refers to \eqn{b_p(a)}{b_p(a)}
| ^
checkRd: (-1) lls.Rd:30: Lost braces
30 | code{name},
| ^
checkRd: (-1) lls.Rd:31: Lost braces
31 | code{mode},
| ^
checkRd: (-1) lls.Rd:32: Lost braces
32 | code{class} and
| ^
checkRd: (-1) lls.Rd:33: Lost braces
33 | code{size} and one row per object in the workspace (if \code{pos=1}).
| ^
checkRd: (-1) plotCIF.Rd:79: Lost braces
79 | \author{Esa L{\"a}{\"a}r{\"a}, \email{esa.laara@oulu.fi}
| ^
checkRd: (-1) plotCIF.Rd:79: Lost braces
79 | \author{Esa L{\"a}{\"a}r{\"a}, \email{esa.laara@oulu.fi}
| ^
checkRd: (-1) plotCIF.Rd:79: Lost braces
79 | \author{Esa L{\"a}{\"a}r{\"a}, \email{esa.laara@oulu.fi}
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... NOTE
S3 methods shown with full name in Rd file 'addDrug.Lexis.Rd':
‘addDrug.Lexis’
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [33s/52s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking re-building of vignette outputs ... [7m/11m] OK
- checking PDF version of manual ... [12s/26s] OK
- checking HTML version of manual ... [8s/17s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 NOTEs