• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 11:37:12 UTC
• checking for file ‘EMMIXgene/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘EMMIXgene’ version ‘0.1.4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘EMMIXgene’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/11s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [13s/17s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp1QM3jj’ ‘~/tmp/scratch/Rtmp277ukP’   ‘~/tmp/scratch/Rtmp2EkLek’ ‘~/tmp/scratch/Rtmp2IZIjb’   ‘~/tmp/scratch/Rtmp2Lem1Y’ ‘~/tmp/scratch/Rtmp2MnjgH’   ‘~/tmp/scratch/Rtmp3xkuPW’ ‘~/tmp/scratch/Rtmp49ToGv’   ‘~/tmp/scratch/Rtmp4cc6Ga’ ‘~/tmp/scratch/Rtmp4gdLgz’   ‘~/tmp/scratch/Rtmp6beETn’ ‘~/tmp/scratch/Rtmp6qZkZs’   ‘~/tmp/scratch/Rtmp7IPFzp’ ‘~/tmp/scratch/Rtmp7fhytU’   ‘~/tmp/scratch/Rtmp7jL1Wh’ ‘~/tmp/scratch/Rtmp8rSSla’   ‘~/tmp/scratch/Rtmp9GHCCX’ ‘~/tmp/scratch/Rtmp9Jw99a’   ‘~/tmp/scratch/Rtmp9wz8xr’ ‘~/tmp/scratch/RtmpAPsUpt’   ‘~/tmp/scratch/RtmpBSnzL6’ ‘~/tmp/scratch/RtmpBUsVTR’   ‘~/tmp/scratch/RtmpBXVlkt’ ‘~/tmp/scratch/RtmpBdkQH0’   ‘~/tmp/scratch/RtmpBezslZ’ ‘~/tmp/scratch/RtmpCudiDL’   ‘~/tmp/scratch/RtmpE6aMHN’ ‘~/tmp/scratch/RtmpESTKwW’   ‘~/tmp/scratch/RtmpEf8m5Q’ ‘~/tmp/scratch/RtmpFLoAL0’   ‘~/tmp/scratch/RtmpFhH5rJ’ ‘~/tmp/scratch/RtmpGbUAn2’   ‘~/tmp/scratch/RtmpGdzlNy’ ‘~/tmp/scratch/RtmpGmPETW’   ‘~/tmp/scratch/RtmpIl3KzG’ ‘~/tmp/scratch/RtmpJ6HhN7’   ‘~/tmp/scratch/RtmpJM0mVK’ ‘~/tmp/scratch/RtmpJO9iE8’   ‘~/tmp/scratch/RtmpJUO7XB’ ‘~/tmp/scratch/RtmpJccp0a’   ‘~/tmp/scratch/RtmpKcW46I’ ‘~/tmp/scratch/RtmpKkwdTk’   ‘~/tmp/scratch/RtmpLA5Krd’ ‘~/tmp/scratch/RtmpLc4Na0’   ‘~/tmp/scratch/RtmpMV1nRx’ ‘~/tmp/scratch/RtmpMc9qR3’   ‘~/tmp/scratch/RtmpMeEw2I’ ‘~/tmp/scratch/RtmpMeqXGA’   ‘~/tmp/scratch/RtmpO3lOPY’ ‘~/tmp/scratch/RtmpOkOxT6’   ‘~/tmp/scratch/RtmpPATS1a’ ‘~/tmp/scratch/RtmpPqHhvB’   ‘~/tmp/scratch/RtmpQZyWu5’ ‘~/tmp/scratch/RtmpQcIAot’   ‘~/tmp/scratch/RtmpSleWg5’ ‘~/tmp/scratch/RtmpTEz6e8’   ‘~/tmp/scratch/RtmpTilGSt’ ‘~/tmp/scratch/RtmpUCWyTS’   ‘~/tmp/scratch/RtmpUWSK9o’ ‘~/tmp/scratch/RtmpUgGjE9’   ‘~/tmp/scratch/RtmpUoIGGs’ ‘~/tmp/scratch/RtmpUv2Rwr’   ‘~/tmp/scratch/RtmpVMtZD1’ ‘~/tmp/scratch/RtmpVjlC5f’   ‘~/tmp/scratch/RtmpVkYuP5’ ‘~/tmp/scratch/RtmpWHD514’   ‘~/tmp/scratch/RtmpX15UaK’ ‘~/tmp/scratch/RtmpXCYyJc’   ‘~/tmp/scratch/RtmpXVnP6A’ ‘~/tmp/scratch/RtmpXYDa8T’   ‘~/tmp/scratch/Rtmpa9CpeQ’ ‘~/tmp/scratch/Rtmpa9fbHw’   ‘~/tmp/scratch/RtmpaskQNW’ ‘~/tmp/scratch/Rtmpax0DyS’   ‘~/tmp/scratch/RtmpbKHfd1’ ‘~/tmp/scratch/RtmpciuAJT’   ‘~/tmp/scratch/RtmpcnNpoR’ ‘~/tmp/scratch/RtmpcsFXnH’   ‘~/tmp/scratch/Rtmpcw1noG’ ‘~/tmp/scratch/RtmpdXeRMR’   ‘~/tmp/scratch/Rtmpfbvhui’ ‘~/tmp/scratch/RtmpgoNthD’   ‘~/tmp/scratch/RtmphNpOmv’ ‘~/tmp/scratch/RtmphRg6qL’   ‘~/tmp/scratch/RtmphdFOms’ ‘~/tmp/scratch/Rtmphlq6sD’   ‘~/tmp/scratch/Rtmpi3tJs0’ ‘~/tmp/scratch/RtmpiLWvBF’   ‘~/tmp/scratch/RtmpjOqcYH’ ‘~/tmp/scratch/RtmpjV3Lyi’   ‘~/tmp/scratch/Rtmpjo7jkO’ ‘~/tmp/scratch/Rtmpk3q8TQ’   ‘~/tmp/scratch/Rtmpki67dY’ ‘~/tmp/scratch/RtmpkocWvU’   ‘~/tmp/scratch/RtmplNLfWJ’ ‘~/tmp/scratch/Rtmpm4ayTr’   ‘~/tmp/scratch/RtmpmfKlHe’ ‘~/tmp/scratch/RtmpmiZZpi’   ‘~/tmp/scratch/Rtmpo8TKwv’ ‘~/tmp/scratch/Rtmpp4zN4P’   ‘~/tmp/scratch/Rtmppte7Bz’ ‘~/tmp/scratch/RtmpqrlZJo’   ‘~/tmp/scratch/RtmprMcqC8’ ‘~/tmp/scratch/Rtmps933Bm’   ‘~/tmp/scratch/RtmpsJIpVH’ ‘~/tmp/scratch/RtmpsNi8vn’   ‘~/tmp/scratch/RtmpsfgZgz’ ‘~/tmp/scratch/Rtmpu0M14W’   ‘~/tmp/scratch/RtmpvCppWo’ ‘~/tmp/scratch/RtmpvLuVn9’   ‘~/tmp/scratch/Rtmpw8uSz6’ ‘~/tmp/scratch/RtmpwesDe9’   ‘~/tmp/scratch/Rtmpwlqh7t’ ‘~/tmp/scratch/Rtmpwyc4d5’   ‘~/tmp/scratch/RtmpxaMnHy’ ‘~/tmp/scratch/Rtmpy4MZqm’   ‘~/tmp/scratch/RtmpyVwzmL’ ‘~/tmp/scratch/RtmpyYxE85’   ‘~/tmp/scratch/RtmpyZn7VK’ ‘~/tmp/scratch/RtmpyfIRVl’   ‘~/tmp/scratch/Rtmpysqchz’ ‘~/tmp/scratch/Rtmpz0XuAS’   ‘~/tmp/scratch/Rtmpz6O7Dg’ ‘~/tmp/scratch/RtmpzEm3nh’   ‘~/tmp/scratch/RtmpzMEC1V’ ‘~/tmp/scratch/RtmpzUNU4K’   ‘~/tmp/scratch/xvfb-run.0tfvB3’ ‘~/tmp/scratch/xvfb-run.23ZIFi’   ‘~/tmp/scratch/xvfb-run.3xNcXT’ ‘~/tmp/scratch/xvfb-run.4gBI7h’   ‘~/tmp/scratch/xvfb-run.6QzUcF’ ‘~/tmp/scratch/xvfb-run.7Gm1jO’   ‘~/tmp/scratch/xvfb-run.8Xh3eP’ ‘~/tmp/scratch/xvfb-run.9WiowP’   ‘~/tmp/scratch/xvfb-run.AoxVuo’ ‘~/tmp/scratch/xvfb-run.Ar5so3’   ‘~/tmp/scratch/xvfb-run.BNNLfH’ ‘~/tmp/scratch/xvfb-run.C7VnPO’   ‘~/tmp/scratch/xvfb-run.CWDOb0’ ‘~/tmp/scratch/xvfb-run.FQTy9b’   ‘~/tmp/scratch/xvfb-run.FpNBjY’ ‘~/tmp/scratch/xvfb-run.GLYDVX’   ‘~/tmp/scratch/xvfb-run.GpIZz5’ ‘~/tmp/scratch/xvfb-run.H63fJ2’   ‘~/tmp/scratch/xvfb-run.IQh7xq’ ‘~/tmp/scratch/xvfb-run.JKfoHB’   ‘~/tmp/scratch/xvfb-run.KOZ2zV’ ‘~/tmp/scratch/xvfb-run.QoDd3C’   ‘~/tmp/scratch/xvfb-run.SWr3Qq’ ‘~/tmp/scratch/xvfb-run.Sh6G3J’   ‘~/tmp/scratch/xvfb-run.Srt8VY’ ‘~/tmp/scratch/xvfb-run.StZffZ’   ‘~/tmp/scratch/xvfb-run.V65JhQ’ ‘~/tmp/scratch/xvfb-run.VH1PlE’   ‘~/tmp/scratch/xvfb-run.VVT8xF’ ‘~/tmp/scratch/xvfb-run.WtQFlA’   ‘~/tmp/scratch/xvfb-run.Wy4fFM’ ‘~/tmp/scratch/xvfb-run.XUquA4’   ‘~/tmp/scratch/xvfb-run.ay3sKU’ ‘~/tmp/scratch/xvfb-run.cceccY’   ‘~/tmp/scratch/xvfb-run.eD0plA’ ‘~/tmp/scratch/xvfb-run.fI1nUq’   ‘~/tmp/scratch/xvfb-run.fNHTFy’ ‘~/tmp/scratch/xvfb-run.gRQlr7’   ‘~/tmp/scratch/xvfb-run.gap0Vt’ ‘~/tmp/scratch/xvfb-run.h1LylL’   ‘~/tmp/scratch/xvfb-run.hQeCmo’ ‘~/tmp/scratch/xvfb-run.kE2rCP’   ‘~/tmp/scratch/xvfb-run.lklHYp’ ‘~/tmp/scratch/xvfb-run.mXXBMa’   ‘~/tmp/scratch/xvfb-run.nFKGxx’ ‘~/tmp/scratch/xvfb-run.pym5Bo’   ‘~/tmp/scratch/xvfb-run.q9AVyR’ ‘~/tmp/scratch/xvfb-run.trwy5U’   ‘~/tmp/scratch/xvfb-run.uLb3cS’ ‘~/tmp/scratch/xvfb-run.xAf8Jh’   ‘~/tmp/scratch/xvfb-run.yNnQYG’ ‘~/tmp/scratch/xvfb-run.z576GS’
• DONE

Status: 1 NOTE