- using R Under development (unstable) (2025-10-19 r88945)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-15 (Debian 15.2.0-4) 15.2.0
GNU Fortran (Debian 15.2.0-4) 15.2.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘DrugExposureDiagnostics/DESCRIPTION’ ... OK
- this is package ‘DrugExposureDiagnostics’ version ‘1.1.5’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/1s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘DrugExposureDiagnostics’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [6s/8s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [0s/1s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [286s/411s] OK
Running ‘testthat.R’ [286s/410s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [123s/170s] OK
- checking PDF version of manual ... [5s/8s] OK
- checking HTML version of manual ... [1s/2s] NOTE
Found the following HTML validation problems:
ShinyApp.html:144:1 (ShinyApp.Rd:73): Warning: missing </ul> before </div>
ShinyApp.html:121:1 (ShinyApp.Rd:62): Warning: <h5> anchor "Usage" already defined
ShinyApp.html:127:1 (ShinyApp.Rd:66): Warning: <h5> anchor "Arguments" already defined
ShinyModule.html:224:1 (ShinyModule.Rd:122): Warning: missing </ul> before </div>
ShinyModule.html:115:1 (ShinyModule.Rd:61): Warning: <h5> anchor "Usage" already defined
ShinyModule.html:121:1 (ShinyModule.Rd:65): Warning: <h5> anchor "Returns" already defined
ShinyModule.html:138:1 (ShinyModule.Rd:74): Warning: <h5> anchor "Usage" already defined
ShinyModule.html:144:1 (ShinyModule.Rd:78): Warning: <h5> anchor "Returns" already defined
ShinyModule.html:161:1 (ShinyModule.Rd:87): Warning: <h5> anchor "Usage" already defined
ShinyModule.html:184:1 (ShinyModule.Rd:102): Warning: <h5> anchor "Returns" already defined
ShinyModule.html:201:1 (ShinyModule.Rd:111): Warning: <h5> anchor "Usage" already defined
ShinyModule.html:207:1 (ShinyModule.Rd:115): Warning: <h5> anchor "Arguments" already defined
checkDbType.html:54:1 (checkDbType.Rd:14): Warning: missing </ul> before </div>
checkIngredientInTable.html:58:1 (checkIngredientInTable.Rd:16): Warning: missing </ul> before </div>
checkIsIngredient.html:54:1 (checkIsIngredient.Rd:14): Warning: missing </ul> before </div>
checkLogical.html:54:1 (checkLogical.Rd:14): Warning: missing </ul> before </div>
checkSampleMinCellCount.html:54:1 (checkSampleMinCellCount.Rd:14): Warning: missing </ul> before </div>
checkTableExists.html:54:1 (checkTableExists.Rd:14): Warning: missing </ul> before </div>
dataPlotPanel.html:197:1 (dataPlotPanel.Rd:119): Warning: missing </ul> before </div>
dataPlotPanel.html:151:1 (dataPlotPanel.Rd:95): Warning: <h5> anchor "Usage" already defined
dataPlotPanel.html:157:1 (dataPlotPanel.Rd:99): Warning: <h5> anchor "Returns" already defined
dataPlotPanel.html:174:1 (dataPlotPanel.Rd:108): Warning: <h5> anchor "Usage" already defined
dataPlotPanel.html:180:1 (dataPlotPanel.Rd:112): Warning: <h5> anchor "Arguments" already defined
metaDataPanel.html:179:1 (metaDataPanel.Rd:101): Warning: missing </ul> before </div>
metaDataPanel.html:133:1 (metaDataPanel.Rd:77): Warning: <h5> anchor "Usage" already defined
metaDataPanel.html:139:1 (metaDataPanel.Rd:81): Warning: <h5> anchor "Returns" already defined
metaDataPanel.html:156:1 (metaDataPanel.Rd:90): Warning: <h5> anchor "Usage" already defined
metaDataPanel.html:162:1 (metaDataPanel.Rd:94): Warning: <h5> anchor "Arguments" already defined
validateChecks.html:50:1 (validateChecks.Rd:12): Warning: missing </ul> before </div>
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE