• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 11:30:16 UTC
• checking for file ‘DGEobj.utils/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘DGEobj.utils’ version ‘1.0.6’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘DGEobj.utils’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/10s] OK
• checking Rd files ... [0s/0s] NOTE checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [52s/70s] OK   Running ‘testthat.R’ [52s/69s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/2s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0FQdZM’ ‘~/tmp/scratch/Rtmp0kvKHM’   ‘~/tmp/scratch/Rtmp0lHyY5’ ‘~/tmp/scratch/Rtmp0zoVHO’   ‘~/tmp/scratch/Rtmp17dH3e’ ‘~/tmp/scratch/Rtmp1AUqym’   ‘~/tmp/scratch/Rtmp1fiwP1’ ‘~/tmp/scratch/Rtmp2Rg2wl’   ‘~/tmp/scratch/Rtmp2X14bP’ ‘~/tmp/scratch/Rtmp3BRmSD’   ‘~/tmp/scratch/Rtmp3Ro2sJ’ ‘~/tmp/scratch/Rtmp3kCtfY’   ‘~/tmp/scratch/Rtmp4KxAC5’ ‘~/tmp/scratch/Rtmp4NnBJZ’   ‘~/tmp/scratch/Rtmp4RskqG’ ‘~/tmp/scratch/Rtmp4VGEqA’   ‘~/tmp/scratch/Rtmp4VlkuI’ ‘~/tmp/scratch/Rtmp4zb4q0’   ‘~/tmp/scratch/Rtmp5JQvT1’ ‘~/tmp/scratch/Rtmp5NJ0nG’   ‘~/tmp/scratch/Rtmp6EaZjm’ ‘~/tmp/scratch/Rtmp6bJxVm’   ‘~/tmp/scratch/Rtmp7U8AvY’ ‘~/tmp/scratch/Rtmp7gquKn’   ‘~/tmp/scratch/Rtmp7yoiXq’ ‘~/tmp/scratch/Rtmp94aHyY’   ‘~/tmp/scratch/Rtmp9rFQx1’ ‘~/tmp/scratch/Rtmp9rgPJ4’   ‘~/tmp/scratch/RtmpAqRXd5’ ‘~/tmp/scratch/RtmpAsIm3q’   ‘~/tmp/scratch/RtmpBvuMzI’ ‘~/tmp/scratch/RtmpC1eh9T’   ‘~/tmp/scratch/RtmpC9m4gH’ ‘~/tmp/scratch/RtmpD5lc3z’   ‘~/tmp/scratch/RtmpDb9Cud’ ‘~/tmp/scratch/RtmpDiz7jb’   ‘~/tmp/scratch/RtmpENi5Qt’ ‘~/tmp/scratch/RtmpEWNUDC’   ‘~/tmp/scratch/RtmpGHM8CC’ ‘~/tmp/scratch/RtmpGUqNiv’   ‘~/tmp/scratch/RtmpHr1KPd’ ‘~/tmp/scratch/RtmpIHSIys’   ‘~/tmp/scratch/RtmpIIWixQ’ ‘~/tmp/scratch/RtmpIKCAgE’   ‘~/tmp/scratch/RtmpJEk9S6’ ‘~/tmp/scratch/RtmpJnx2cT’   ‘~/tmp/scratch/RtmpLLVT4U’ ‘~/tmp/scratch/RtmpLvRPEy’   ‘~/tmp/scratch/RtmpM3s4FJ’ ‘~/tmp/scratch/RtmpMRcPLj’   ‘~/tmp/scratch/RtmpMxt4n7’ ‘~/tmp/scratch/RtmpN5PpyI’   ‘~/tmp/scratch/RtmpNYAXZi’ ‘~/tmp/scratch/RtmpPDuB2x’   ‘~/tmp/scratch/RtmpPeuZTb’ ‘~/tmp/scratch/RtmpPlJCTw’   ‘~/tmp/scratch/RtmpQFh7iL’ ‘~/tmp/scratch/RtmpRZ5KEG’   ‘~/tmp/scratch/RtmpRaDI4Q’ ‘~/tmp/scratch/RtmpRc7LAy’   ‘~/tmp/scratch/RtmpRcONCu’ ‘~/tmp/scratch/RtmpRofHDa’   ‘~/tmp/scratch/RtmpV62U7k’ ‘~/tmp/scratch/RtmpVB3pCT’   ‘~/tmp/scratch/RtmpVaQfig’ ‘~/tmp/scratch/RtmpVkYFdQ’   ‘~/tmp/scratch/RtmpVlVNaE’ ‘~/tmp/scratch/RtmpWRwldv’   ‘~/tmp/scratch/RtmpXRSUfX’ ‘~/tmp/scratch/RtmpY232pf’   ‘~/tmp/scratch/RtmpYM73pm’ ‘~/tmp/scratch/RtmpYSpQtP’   ‘~/tmp/scratch/RtmpYTGApW’ ‘~/tmp/scratch/RtmpYfuOc5’   ‘~/tmp/scratch/RtmpZFAhZf’ ‘~/tmp/scratch/RtmpZKaaFe’   ‘~/tmp/scratch/RtmpaM75hN’ ‘~/tmp/scratch/RtmpbM0kXv’   ‘~/tmp/scratch/RtmpcHn5GY’ ‘~/tmp/scratch/RtmpdBPA1J’   ‘~/tmp/scratch/RtmpdXfSxB’ ‘~/tmp/scratch/RtmpddlOgc’   ‘~/tmp/scratch/Rtmpe41t3A’ ‘~/tmp/scratch/RtmpeVAN8P’   ‘~/tmp/scratch/RtmpeW3HBH’ ‘~/tmp/scratch/RtmpejxEZx’   ‘~/tmp/scratch/Rtmpekndzk’ ‘~/tmp/scratch/RtmpevB8sS’   ‘~/tmp/scratch/RtmpfJV9MF’ ‘~/tmp/scratch/RtmpfWFYRP’   ‘~/tmp/scratch/RtmpfsFXnQ’ ‘~/tmp/scratch/RtmpgqPH4T’   ‘~/tmp/scratch/RtmpgvevDX’ ‘~/tmp/scratch/Rtmphb9n0i’   ‘~/tmp/scratch/RtmpiKFjUw’ ‘~/tmp/scratch/RtmpiNbCCR’   ‘~/tmp/scratch/RtmpiWF89j’ ‘~/tmp/scratch/Rtmpj9DrPQ’   ‘~/tmp/scratch/RtmpjJMf5Q’ ‘~/tmp/scratch/RtmpjTwqxm’   ‘~/tmp/scratch/RtmpjaTmhY’ ‘~/tmp/scratch/Rtmpjba9NZ’   ‘~/tmp/scratch/RtmpjtpRx8’ ‘~/tmp/scratch/Rtmpk6kLEo’   ‘~/tmp/scratch/RtmpkPMwBz’ ‘~/tmp/scratch/RtmpkgXJK1’   ‘~/tmp/scratch/RtmplIDkCk’ ‘~/tmp/scratch/Rtmplm0uXC’   ‘~/tmp/scratch/RtmplvTARV’ ‘~/tmp/scratch/RtmplxAPTA’   ‘~/tmp/scratch/RtmpmiZFCF’ ‘~/tmp/scratch/RtmpoGUNY3’   ‘~/tmp/scratch/RtmpozaSD2’ ‘~/tmp/scratch/Rtmpp52Fv5’   ‘~/tmp/scratch/RtmppbiSBI’ ‘~/tmp/scratch/RtmppjrUPS’   ‘~/tmp/scratch/RtmpppxUSe’ ‘~/tmp/scratch/RtmpqMcyTH’   ‘~/tmp/scratch/RtmpqRxEP1’ ‘~/tmp/scratch/RtmpqY6L8J’   ‘~/tmp/scratch/RtmprBQ2NJ’ ‘~/tmp/scratch/RtmprYLR4Z’   ‘~/tmp/scratch/RtmprbXY0j’ ‘~/tmp/scratch/RtmpsIUcyv’   ‘~/tmp/scratch/RtmpsaBW0V’ ‘~/tmp/scratch/Rtmpt43tJQ’   ‘~/tmp/scratch/RtmpucIJip’ ‘~/tmp/scratch/Rtmpv1JrZO’   ‘~/tmp/scratch/Rtmpv1cUjS’ ‘~/tmp/scratch/RtmpvnscT1’   ‘~/tmp/scratch/RtmpwCAoah’ ‘~/tmp/scratch/RtmpwEi67V’   ‘~/tmp/scratch/RtmpwlRv5a’ ‘~/tmp/scratch/RtmpxPrKc6’   ‘~/tmp/scratch/Rtmpxzjh3W’ ‘~/tmp/scratch/Rtmpy4RiZh’   ‘~/tmp/scratch/Rtmpz7XPTu’ ‘~/tmp/scratch/RtmpzIVhET’   ‘~/tmp/scratch/RtmpzhFH0T’ ‘~/tmp/scratch/xvfb-run.1Lxcmg’   ‘~/tmp/scratch/xvfb-run.1a4qsj’ ‘~/tmp/scratch/xvfb-run.2Oyz3c’   ‘~/tmp/scratch/xvfb-run.3JNlZv’ ‘~/tmp/scratch/xvfb-run.40VqIC’   ‘~/tmp/scratch/xvfb-run.4GSZ1V’ ‘~/tmp/scratch/xvfb-run.5h1ZR6’   ‘~/tmp/scratch/xvfb-run.8Hfb40’ ‘~/tmp/scratch/xvfb-run.9KK5NN’   ‘~/tmp/scratch/xvfb-run.9QJWwu’ ‘~/tmp/scratch/xvfb-run.9maZpj’   ‘~/tmp/scratch/xvfb-run.C7oacj’ ‘~/tmp/scratch/xvfb-run.DTe2d1’   ‘~/tmp/scratch/xvfb-run.F9hNFQ’ ‘~/tmp/scratch/xvfb-run.FtpXGD’   ‘~/tmp/scratch/xvfb-run.I7Lmqh’ ‘~/tmp/scratch/xvfb-run.IEIJrJ’   ‘~/tmp/scratch/xvfb-run.J5Xvp4’ ‘~/tmp/scratch/xvfb-run.JODI0K’   ‘~/tmp/scratch/xvfb-run.KieMTa’ ‘~/tmp/scratch/xvfb-run.LcmXso’   ‘~/tmp/scratch/xvfb-run.Ns9aBp’ ‘~/tmp/scratch/xvfb-run.OM7KbL’   ‘~/tmp/scratch/xvfb-run.OVeAWs’ ‘~/tmp/scratch/xvfb-run.PAmImY’   ‘~/tmp/scratch/xvfb-run.QD3yia’ ‘~/tmp/scratch/xvfb-run.RGrn0a’   ‘~/tmp/scratch/xvfb-run.RMGeQd’ ‘~/tmp/scratch/xvfb-run.SJuVyJ’   ‘~/tmp/scratch/xvfb-run.SnTipQ’ ‘~/tmp/scratch/xvfb-run.TJGnem’   ‘~/tmp/scratch/xvfb-run.VxD3nh’ ‘~/tmp/scratch/xvfb-run.Z1SLFw’   ‘~/tmp/scratch/xvfb-run.Z7wmac’ ‘~/tmp/scratch/xvfb-run.Zu7pls’   ‘~/tmp/scratch/xvfb-run.a1vODM’ ‘~/tmp/scratch/xvfb-run.c0VgVM’   ‘~/tmp/scratch/xvfb-run.dMyOKe’ ‘~/tmp/scratch/xvfb-run.dNNgFM’   ‘~/tmp/scratch/xvfb-run.fWBSwA’ ‘~/tmp/scratch/xvfb-run.hmsbKB’   ‘~/tmp/scratch/xvfb-run.k5yoM5’ ‘~/tmp/scratch/xvfb-run.kA7g55’   ‘~/tmp/scratch/xvfb-run.kY9WiR’ ‘~/tmp/scratch/xvfb-run.lWl40v’   ‘~/tmp/scratch/xvfb-run.lb6VlP’ ‘~/tmp/scratch/xvfb-run.lvXdml’   ‘~/tmp/scratch/xvfb-run.mQQpl4’ ‘~/tmp/scratch/xvfb-run.n1eH0Z’   ‘~/tmp/scratch/xvfb-run.nNff91’ ‘~/tmp/scratch/xvfb-run.pX8KlE’   ‘~/tmp/scratch/xvfb-run.sTls39’ ‘~/tmp/scratch/xvfb-run.t6CfqZ’   ‘~/tmp/scratch/xvfb-run.wl37j5’ ‘~/tmp/scratch/xvfb-run.x00Tk5’   ‘~/tmp/scratch/xvfb-run.yaXZ6s’ ‘~/tmp/scratch/xvfb-run.yy3dWf’   ‘~/tmp/scratch/xvfb-run.zL2ZNu’
• DONE

Status: 2 NOTEs