• using R Under development (unstable) (2026-08-02 r90338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-03 11:28:06 UTC
• checking for file ‘CytoSimplex/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘CytoSimplex’ version ‘0.2.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘CytoSimplex’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/5s] OK
• checking whether the package can be unloaded cleanly ... [3s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/5s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [19s/24s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [2s/2s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [7s/7s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [35s/39s] OK   Running ‘testthat.R’ [35s/39s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [17s/21s] OK
• checking PDF version of manual ... [5s/6s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp00H8DT’ ‘~/tmp/scratch/Rtmp12IpGE’   ‘~/tmp/scratch/Rtmp12QCGp’ ‘~/tmp/scratch/Rtmp17aMVd’   ‘~/tmp/scratch/Rtmp24zokT’ ‘~/tmp/scratch/Rtmp2DlFhs’   ‘~/tmp/scratch/Rtmp2GrY2R’ ‘~/tmp/scratch/Rtmp2ZdBqh’   ‘~/tmp/scratch/Rtmp321wGN’ ‘~/tmp/scratch/Rtmp32s4A6’   ‘~/tmp/scratch/Rtmp38Vymx’ ‘~/tmp/scratch/Rtmp3DXc6r’   ‘~/tmp/scratch/Rtmp3oj33c’ ‘~/tmp/scratch/Rtmp4JoXwF’   ‘~/tmp/scratch/Rtmp4u6phI’ ‘~/tmp/scratch/Rtmp4yuLPg’   ‘~/tmp/scratch/Rtmp5EfbiJ’ ‘~/tmp/scratch/Rtmp5f403a’   ‘~/tmp/scratch/Rtmp5kKLrP’ ‘~/tmp/scratch/Rtmp5kaptQ’   ‘~/tmp/scratch/Rtmp6k0dlL’ ‘~/tmp/scratch/Rtmp7r2UsU’   ‘~/tmp/scratch/Rtmp88acp1’ ‘~/tmp/scratch/Rtmp8OR8xP’   ‘~/tmp/scratch/Rtmp8TPqHI’ ‘~/tmp/scratch/Rtmp8ou9L7’   ‘~/tmp/scratch/Rtmp92he1e’ ‘~/tmp/scratch/Rtmp9rvzlw’   ‘~/tmp/scratch/Rtmp9sOSo5’ ‘~/tmp/scratch/Rtmp9xRDBR’   ‘~/tmp/scratch/RtmpAQmOZZ’ ‘~/tmp/scratch/RtmpApE33d’   ‘~/tmp/scratch/RtmpBVTchR’ ‘~/tmp/scratch/RtmpBWBZcq’   ‘~/tmp/scratch/RtmpBx0IYB’ ‘~/tmp/scratch/RtmpCDn3nO’   ‘~/tmp/scratch/RtmpCcmoh7’ ‘~/tmp/scratch/RtmpCxd6vD’   ‘~/tmp/scratch/RtmpD2FujC’ ‘~/tmp/scratch/RtmpDfqi8e’   ‘~/tmp/scratch/RtmpDrsea2’ ‘~/tmp/scratch/RtmpEMv1jA’   ‘~/tmp/scratch/RtmpEPVcG1’ ‘~/tmp/scratch/RtmpEaCS6r’   ‘~/tmp/scratch/RtmpF3LjEL’ ‘~/tmp/scratch/RtmpFAlT97’   ‘~/tmp/scratch/RtmpFGGh18’ ‘~/tmp/scratch/RtmpFKADMg’   ‘~/tmp/scratch/RtmpFgVtqx’ ‘~/tmp/scratch/RtmpG7uAnD’   ‘~/tmp/scratch/RtmpGbLt6I’ ‘~/tmp/scratch/RtmpGjZxlD’   ‘~/tmp/scratch/RtmpHESctt’ ‘~/tmp/scratch/RtmpHTtInq’   ‘~/tmp/scratch/RtmpHgEBfF’ ‘~/tmp/scratch/RtmpHtDgVw’   ‘~/tmp/scratch/RtmpIVlQLA’ ‘~/tmp/scratch/RtmpJ611wK’   ‘~/tmp/scratch/RtmpJWySie’ ‘~/tmp/scratch/RtmpJypCiC’   ‘~/tmp/scratch/RtmpKtKnm0’ ‘~/tmp/scratch/RtmpKwktAS’   ‘~/tmp/scratch/RtmpM1bjHP’ ‘~/tmp/scratch/RtmpM6aFPo’   ‘~/tmp/scratch/RtmpMECOxi’ ‘~/tmp/scratch/RtmpMFtLHS’   ‘~/tmp/scratch/RtmpMaLBjC’ ‘~/tmp/scratch/RtmpMrSpUp’   ‘~/tmp/scratch/RtmpNqwRdf’ ‘~/tmp/scratch/RtmpO2XkaG’   ‘~/tmp/scratch/RtmpOuNd1V’ ‘~/tmp/scratch/RtmpOvOIzk’   ‘~/tmp/scratch/RtmpPHLXN4’ ‘~/tmp/scratch/RtmpPMdrxo’   ‘~/tmp/scratch/RtmpQIacpB’ ‘~/tmp/scratch/RtmpQTka3O’   ‘~/tmp/scratch/RtmpQoCM4G’ ‘~/tmp/scratch/RtmpQvfiMG’   ‘~/tmp/scratch/RtmpRAYMzm’ ‘~/tmp/scratch/RtmpTJF3Ck’   ‘~/tmp/scratch/RtmpTNlNpp’ ‘~/tmp/scratch/RtmpTUsZJO’   ‘~/tmp/scratch/RtmpUGWK1e’ ‘~/tmp/scratch/RtmpUU5wZl’   ‘~/tmp/scratch/RtmpUfbZcq’ ‘~/tmp/scratch/RtmpUhahCp’   ‘~/tmp/scratch/RtmpVXOxpp’ ‘~/tmp/scratch/RtmpWOntJh’   ‘~/tmp/scratch/RtmpWV0e79’ ‘~/tmp/scratch/RtmpWZslxd’   ‘~/tmp/scratch/RtmpWm8iPp’ ‘~/tmp/scratch/RtmpXKKSZ6’   ‘~/tmp/scratch/RtmpXjGzai’ ‘~/tmp/scratch/RtmpXvmjSp’   ‘~/tmp/scratch/RtmpYyjPWq’ ‘~/tmp/scratch/RtmpZIbUrn’   ‘~/tmp/scratch/RtmpaMFFAu’ ‘~/tmp/scratch/RtmpaW870r’   ‘~/tmp/scratch/RtmpbI6zDA’ ‘~/tmp/scratch/RtmpbTy7Yj’   ‘~/tmp/scratch/Rtmpbk9OzI’ ‘~/tmp/scratch/RtmpcGgb9X’   ‘~/tmp/scratch/Rtmpd2vOxO’ ‘~/tmp/scratch/Rtmpd3T8iv’   ‘~/tmp/scratch/RtmpdIFXbf’ ‘~/tmp/scratch/RtmpeVtjdN’   ‘~/tmp/scratch/RtmpegNQEc’ ‘~/tmp/scratch/RtmpfduBMX’   ‘~/tmp/scratch/RtmpfeUuL3’ ‘~/tmp/scratch/RtmpflFQwD’   ‘~/tmp/scratch/Rtmpfv8WJC’ ‘~/tmp/scratch/RtmpgAF6Hg’   ‘~/tmp/scratch/RtmpgCuroX’ ‘~/tmp/scratch/RtmpgLzGSp’   ‘~/tmp/scratch/RtmpgzinUO’ ‘~/tmp/scratch/RtmphiGnNf’   ‘~/tmp/scratch/Rtmphjo6Mh’ ‘~/tmp/scratch/RtmphpqbVJ’   ‘~/tmp/scratch/RtmpiHp5zv’ ‘~/tmp/scratch/RtmpjA1Cvx’   ‘~/tmp/scratch/RtmpjrL1ZQ’ ‘~/tmp/scratch/Rtmpl0wmRw’   ‘~/tmp/scratch/RtmplKB1gi’ ‘~/tmp/scratch/RtmplNJddx’   ‘~/tmp/scratch/RtmplYLNa2’ ‘~/tmp/scratch/RtmplseA8e’   ‘~/tmp/scratch/RtmpmTifc9’ ‘~/tmp/scratch/RtmpmeVRMW’   ‘~/tmp/scratch/RtmpnmiJUf’ ‘~/tmp/scratch/RtmpnruYiE’   ‘~/tmp/scratch/RtmppWcic1’ ‘~/tmp/scratch/RtmppjR319’   ‘~/tmp/scratch/Rtmpq61h8e’ ‘~/tmp/scratch/RtmpqF9TCB’   ‘~/tmp/scratch/RtmprIKIMi’ ‘~/tmp/scratch/RtmpriZ24e’   ‘~/tmp/scratch/RtmprnDvBB’ ‘~/tmp/scratch/RtmpsGdbHz’   ‘~/tmp/scratch/RtmptD4qZw’ ‘~/tmp/scratch/RtmptEEFzd’   ‘~/tmp/scratch/RtmptKqQ4v’ ‘~/tmp/scratch/RtmpuDFvbh’   ‘~/tmp/scratch/RtmpuFo5xh’ ‘~/tmp/scratch/RtmpuPLSZq’   ‘~/tmp/scratch/RtmpvMIMDJ’ ‘~/tmp/scratch/RtmpvXsFlK’   ‘~/tmp/scratch/RtmpvqiKrc’ ‘~/tmp/scratch/RtmpwGA3FJ’   ‘~/tmp/scratch/RtmpwnsoDw’ ‘~/tmp/scratch/RtmpwzceQE’   ‘~/tmp/scratch/Rtmpx9kGBz’ ‘~/tmp/scratch/RtmpxBIgpU’   ‘~/tmp/scratch/RtmpxhuaMB’ ‘~/tmp/scratch/Rtmpy7jQyt’   ‘~/tmp/scratch/Rtmpy7yBG0’ ‘~/tmp/scratch/RtmpyzJhBt’   ‘~/tmp/scratch/RtmpzaD8vD’ ‘~/tmp/scratch/RtmpzwW2or’   ‘~/tmp/scratch/xvfb-run.0maA0d’ ‘~/tmp/scratch/xvfb-run.2bZtIa’   ‘~/tmp/scratch/xvfb-run.3N4U4z’ ‘~/tmp/scratch/xvfb-run.3dUFgS’   ‘~/tmp/scratch/xvfb-run.3nZHBc’ ‘~/tmp/scratch/xvfb-run.3sVyQw’   ‘~/tmp/scratch/xvfb-run.51hPdr’ ‘~/tmp/scratch/xvfb-run.5jQ5mC’   ‘~/tmp/scratch/xvfb-run.7cK6RC’ ‘~/tmp/scratch/xvfb-run.7hmZLY’   ‘~/tmp/scratch/xvfb-run.9QQ0TI’ ‘~/tmp/scratch/xvfb-run.9VHQ1q’   ‘~/tmp/scratch/xvfb-run.A7T3wJ’ ‘~/tmp/scratch/xvfb-run.APBcqt’   ‘~/tmp/scratch/xvfb-run.Cnacul’ ‘~/tmp/scratch/xvfb-run.FIha3f’   ‘~/tmp/scratch/xvfb-run.FPKCsu’ ‘~/tmp/scratch/xvfb-run.HLMxes’   ‘~/tmp/scratch/xvfb-run.I0YdrS’ ‘~/tmp/scratch/xvfb-run.Jex7lL’   ‘~/tmp/scratch/xvfb-run.KW2q7X’ ‘~/tmp/scratch/xvfb-run.KyimG4’   ‘~/tmp/scratch/xvfb-run.L1ZsPQ’ ‘~/tmp/scratch/xvfb-run.LUGLCn’   ‘~/tmp/scratch/xvfb-run.LdJxMk’ ‘~/tmp/scratch/xvfb-run.Lmu1B0’   ‘~/tmp/scratch/xvfb-run.MXpfYG’ ‘~/tmp/scratch/xvfb-run.MmE9V2’   ‘~/tmp/scratch/xvfb-run.N7yCsO’ ‘~/tmp/scratch/xvfb-run.P3LIR1’   ‘~/tmp/scratch/xvfb-run.PCK7LZ’ ‘~/tmp/scratch/xvfb-run.PFXntI’   ‘~/tmp/scratch/xvfb-run.PbSXlp’ ‘~/tmp/scratch/xvfb-run.SuWCUP’   ‘~/tmp/scratch/xvfb-run.VjvGUf’ ‘~/tmp/scratch/xvfb-run.X09c0I’   ‘~/tmp/scratch/xvfb-run.Xi42KZ’ ‘~/tmp/scratch/xvfb-run.ZNmh5z’   ‘~/tmp/scratch/xvfb-run.aXSSMa’ ‘~/tmp/scratch/xvfb-run.aaYGAR’   ‘~/tmp/scratch/xvfb-run.b9kHFM’ ‘~/tmp/scratch/xvfb-run.bNtTy8’   ‘~/tmp/scratch/xvfb-run.ceB88s’ ‘~/tmp/scratch/xvfb-run.e2goA8’   ‘~/tmp/scratch/xvfb-run.eQL7Fw’ ‘~/tmp/scratch/xvfb-run.f9QtSD’   ‘~/tmp/scratch/xvfb-run.fbmOz5’ ‘~/tmp/scratch/xvfb-run.g41nCC’   ‘~/tmp/scratch/xvfb-run.htrdrQ’ ‘~/tmp/scratch/xvfb-run.iEvyWO’   ‘~/tmp/scratch/xvfb-run.jPBVU1’ ‘~/tmp/scratch/xvfb-run.kEaDrP’   ‘~/tmp/scratch/xvfb-run.ltD5TA’ ‘~/tmp/scratch/xvfb-run.mDRFhE’   ‘~/tmp/scratch/xvfb-run.nqddIF’ ‘~/tmp/scratch/xvfb-run.nwxhbG’   ‘~/tmp/scratch/xvfb-run.pOSUmG’ ‘~/tmp/scratch/xvfb-run.pVpndS’   ‘~/tmp/scratch/xvfb-run.pXkaqj’ ‘~/tmp/scratch/xvfb-run.q8H6iB’   ‘~/tmp/scratch/xvfb-run.qBPeyt’ ‘~/tmp/scratch/xvfb-run.sNdxKR’   ‘~/tmp/scratch/xvfb-run.t01mXq’ ‘~/tmp/scratch/xvfb-run.uwpPBl’   ‘~/tmp/scratch/xvfb-run.vMDQVw’ ‘~/tmp/scratch/xvfb-run.vu0FTk’   ‘~/tmp/scratch/xvfb-run.vwRNLp’ ‘~/tmp/scratch/xvfb-run.we9jb2’   ‘~/tmp/scratch/xvfb-run.wliegD’ ‘~/tmp/scratch/xvfb-run.xIPk1O’   ‘~/tmp/scratch/xvfb-run.yn37mX’ ‘~/tmp/scratch/xvfb-run.z3VHDc’
• DONE

Status: 1 NOTE