• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 11:28:16 UTC
• checking for file ‘Cyclops/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘Cyclops’ version ‘3.7.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘Cyclops’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [14s/20s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking include directives in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [2s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [162s/208s] OK   Running ‘testthat.R’ [162s/208s]
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0HVQwv’ ‘~/tmp/scratch/Rtmp0SMqCF’   ‘~/tmp/scratch/Rtmp0TUsV5’ ‘~/tmp/scratch/Rtmp0aLIJh’   ‘~/tmp/scratch/Rtmp0dKOrn’ ‘~/tmp/scratch/Rtmp1BhhY8’   ‘~/tmp/scratch/Rtmp1VHAbC’ ‘~/tmp/scratch/Rtmp1o5MzL’   ‘~/tmp/scratch/Rtmp1xPi7G’ ‘~/tmp/scratch/Rtmp2bI06Y’   ‘~/tmp/scratch/Rtmp3DYeGZ’ ‘~/tmp/scratch/Rtmp3ZuTiq’   ‘~/tmp/scratch/Rtmp3ibNMd’ ‘~/tmp/scratch/Rtmp4NtgLy’   ‘~/tmp/scratch/Rtmp53xRKB’ ‘~/tmp/scratch/Rtmp572Rpi’   ‘~/tmp/scratch/Rtmp5cPyM5’ ‘~/tmp/scratch/Rtmp5g1Lof’   ‘~/tmp/scratch/Rtmp5vkTvi’ ‘~/tmp/scratch/Rtmp7GHsNX’   ‘~/tmp/scratch/Rtmp7azpa6’ ‘~/tmp/scratch/Rtmp7bKsVR’   ‘~/tmp/scratch/Rtmp850JY3’ ‘~/tmp/scratch/Rtmp8IX0CM’   ‘~/tmp/scratch/Rtmp94Mysz’ ‘~/tmp/scratch/Rtmp9Md59s’   ‘~/tmp/scratch/Rtmp9XY3cG’ ‘~/tmp/scratch/Rtmp9fvLl4’   ‘~/tmp/scratch/Rtmp9hkPg6’ ‘~/tmp/scratch/RtmpASFHpm’   ‘~/tmp/scratch/RtmpB9H9LY’ ‘~/tmp/scratch/RtmpBwpBxc’   ‘~/tmp/scratch/RtmpD3I0Lt’ ‘~/tmp/scratch/RtmpDl63KP’   ‘~/tmp/scratch/RtmpEmu0Fs’ ‘~/tmp/scratch/RtmpFK0SxT’   ‘~/tmp/scratch/RtmpFK3mm8’ ‘~/tmp/scratch/RtmpFU2GjK’   ‘~/tmp/scratch/RtmpFjyo50’ ‘~/tmp/scratch/RtmpFxh3oz’   ‘~/tmp/scratch/RtmpGQCcZ0’ ‘~/tmp/scratch/RtmpH4djBG’   ‘~/tmp/scratch/RtmpHmuXaJ’ ‘~/tmp/scratch/RtmpHv5Ae3’   ‘~/tmp/scratch/RtmpIcWUP6’ ‘~/tmp/scratch/RtmpIp9Kjo’   ‘~/tmp/scratch/RtmpJ5J979’ ‘~/tmp/scratch/RtmpJmlgGI’   ‘~/tmp/scratch/RtmpJzP0W3’ ‘~/tmp/scratch/RtmpK0IsrV’   ‘~/tmp/scratch/RtmpKEz9Xa’ ‘~/tmp/scratch/RtmpKNXgwG’   ‘~/tmp/scratch/RtmpKxu07D’ ‘~/tmp/scratch/RtmpNdMCJm’   ‘~/tmp/scratch/RtmpNtoNQF’ ‘~/tmp/scratch/RtmpNuYlYK’   ‘~/tmp/scratch/RtmpO0pINM’ ‘~/tmp/scratch/RtmpO9mNdr’   ‘~/tmp/scratch/RtmpOPu9FL’ ‘~/tmp/scratch/RtmpOYDiCc’   ‘~/tmp/scratch/RtmpOteXNX’ ‘~/tmp/scratch/RtmpP1pccn’   ‘~/tmp/scratch/RtmpPOuji8’ ‘~/tmp/scratch/RtmpPQdnXK’   ‘~/tmp/scratch/RtmpPajp2D’ ‘~/tmp/scratch/RtmpPbFxb2’   ‘~/tmp/scratch/RtmpPxH2hO’ ‘~/tmp/scratch/RtmpQAW0Mx’   ‘~/tmp/scratch/RtmpQI64AR’ ‘~/tmp/scratch/RtmpQqJCpV’   ‘~/tmp/scratch/RtmpRaXUHE’ ‘~/tmp/scratch/RtmpS6VmBW’   ‘~/tmp/scratch/RtmpS7Mmi7’ ‘~/tmp/scratch/RtmpSUACCH’   ‘~/tmp/scratch/RtmpT0C9sM’ ‘~/tmp/scratch/RtmpT1H8wz’   ‘~/tmp/scratch/RtmpTXaEgN’ ‘~/tmp/scratch/RtmpU0tDjp’   ‘~/tmp/scratch/RtmpUZOJJm’ ‘~/tmp/scratch/RtmpUlsw6Z’   ‘~/tmp/scratch/RtmpUq59na’ ‘~/tmp/scratch/RtmpVULc3F’   ‘~/tmp/scratch/RtmpVzrmjH’ ‘~/tmp/scratch/RtmpWFAoPe’   ‘~/tmp/scratch/RtmpWLC6Cy’ ‘~/tmp/scratch/RtmpWMNURh’   ‘~/tmp/scratch/RtmpWOmANT’ ‘~/tmp/scratch/RtmpWiReH0’   ‘~/tmp/scratch/RtmpWuUide’ ‘~/tmp/scratch/RtmpX4T0jG’   ‘~/tmp/scratch/RtmpY2xAT5’ ‘~/tmp/scratch/RtmpZ3rFqN’   ‘~/tmp/scratch/RtmpZOV8Es’ ‘~/tmp/scratch/RtmpZd7WQy’   ‘~/tmp/scratch/RtmpZkHcvP’ ‘~/tmp/scratch/RtmpZq8pC3’   ‘~/tmp/scratch/Rtmpa2XJ6I’ ‘~/tmp/scratch/RtmpaFGRB2’   ‘~/tmp/scratch/RtmpaHoaO2’ ‘~/tmp/scratch/RtmpagSrq4’   ‘~/tmp/scratch/RtmpazEN0M’ ‘~/tmp/scratch/RtmpbpPy4Z’   ‘~/tmp/scratch/Rtmpc5ygne’ ‘~/tmp/scratch/RtmpcGtMQR’   ‘~/tmp/scratch/RtmpcIUqik’ ‘~/tmp/scratch/RtmpceGeUv’   ‘~/tmp/scratch/Rtmpcq8tVg’ ‘~/tmp/scratch/RtmpdKVIWf’   ‘~/tmp/scratch/RtmpdKrMjG’ ‘~/tmp/scratch/RtmpflEdMp’   ‘~/tmp/scratch/RtmpfyT5Ex’ ‘~/tmp/scratch/RtmpgekYWV’   ‘~/tmp/scratch/RtmpgjLk3T’ ‘~/tmp/scratch/Rtmph9eQ0K’   ‘~/tmp/scratch/RtmpiJgNLg’ ‘~/tmp/scratch/RtmpiJxqPv’   ‘~/tmp/scratch/RtmpiykaRc’ ‘~/tmp/scratch/Rtmpj8lIZf’   ‘~/tmp/scratch/RtmpjFXTM3’ ‘~/tmp/scratch/RtmpjVqbXs’   ‘~/tmp/scratch/RtmpjXytda’ ‘~/tmp/scratch/RtmpjsQOrb’   ‘~/tmp/scratch/RtmpjxD2ud’ ‘~/tmp/scratch/Rtmpk4cUUF’   ‘~/tmp/scratch/RtmpkHu61R’ ‘~/tmp/scratch/RtmpkTp3UR’   ‘~/tmp/scratch/RtmpkXmaqx’ ‘~/tmp/scratch/Rtmpll1eSR’   ‘~/tmp/scratch/Rtmpm55nnD’ ‘~/tmp/scratch/Rtmpm5hkoX’   ‘~/tmp/scratch/Rtmpms6XtB’ ‘~/tmp/scratch/RtmpnZSF5i’   ‘~/tmp/scratch/RtmpnrPnxJ’ ‘~/tmp/scratch/Rtmpo5JhA9’   ‘~/tmp/scratch/Rtmpo9WKcA’ ‘~/tmp/scratch/RtmpoHok0W’   ‘~/tmp/scratch/RtmpogqziB’ ‘~/tmp/scratch/Rtmpp2RZle’   ‘~/tmp/scratch/Rtmpp2unmM’ ‘~/tmp/scratch/RtmppsItvf’   ‘~/tmp/scratch/RtmpqWJMJG’ ‘~/tmp/scratch/Rtmpqplsy6’   ‘~/tmp/scratch/Rtmpqsowo4’ ‘~/tmp/scratch/RtmpsJs8Bm’   ‘~/tmp/scratch/Rtmpsdz2T6’ ‘~/tmp/scratch/RtmpuNpeAx’   ‘~/tmp/scratch/Rtmpul109A’ ‘~/tmp/scratch/Rtmpv5zlzj’   ‘~/tmp/scratch/RtmpvNwsqH’ ‘~/tmp/scratch/RtmpvmyPoK’   ‘~/tmp/scratch/RtmpvqmMxy’ ‘~/tmp/scratch/RtmpxMIIj9’   ‘~/tmp/scratch/RtmpxP13Sm’ ‘~/tmp/scratch/RtmpxV9k7E’   ‘~/tmp/scratch/RtmpxY2EJB’ ‘~/tmp/scratch/RtmpxYZRfZ’   ‘~/tmp/scratch/RtmpxYhZ4N’ ‘~/tmp/scratch/Rtmpxfj25K’   ‘~/tmp/scratch/Rtmpy0ABZm’ ‘~/tmp/scratch/RtmpyBF6pc’   ‘~/tmp/scratch/RtmpyEuwE9’ ‘~/tmp/scratch/RtmpyIhxaz’   ‘~/tmp/scratch/RtmpydBrX3’ ‘~/tmp/scratch/RtmpyeSbae’   ‘~/tmp/scratch/RtmpynlPQp’ ‘~/tmp/scratch/Rtmpzp7MhZ’   ‘~/tmp/scratch/RtmpzrYFzS’ ‘~/tmp/scratch/xvfb-run.2L0wJ0’   ‘~/tmp/scratch/xvfb-run.39FSzQ’ ‘~/tmp/scratch/xvfb-run.3MjqCw’   ‘~/tmp/scratch/xvfb-run.3SE4QN’ ‘~/tmp/scratch/xvfb-run.4eWiMi’   ‘~/tmp/scratch/xvfb-run.6LJA1h’ ‘~/tmp/scratch/xvfb-run.81SAAZ’   ‘~/tmp/scratch/xvfb-run.8G4Nok’ ‘~/tmp/scratch/xvfb-run.8P33cc’   ‘~/tmp/scratch/xvfb-run.8nZ8GY’ ‘~/tmp/scratch/xvfb-run.8zhyxU’   ‘~/tmp/scratch/xvfb-run.9fLRgZ’ ‘~/tmp/scratch/xvfb-run.AV5KYt’   ‘~/tmp/scratch/xvfb-run.ArSKKI’ ‘~/tmp/scratch/xvfb-run.AydCy2’   ‘~/tmp/scratch/xvfb-run.Bwp47n’ ‘~/tmp/scratch/xvfb-run.CPSIKZ’   ‘~/tmp/scratch/xvfb-run.D4jqoY’ ‘~/tmp/scratch/xvfb-run.DDRDCr’   ‘~/tmp/scratch/xvfb-run.HahNpz’ ‘~/tmp/scratch/xvfb-run.HgTt0q’   ‘~/tmp/scratch/xvfb-run.HxcEs8’ ‘~/tmp/scratch/xvfb-run.I3KycF’   ‘~/tmp/scratch/xvfb-run.Iwyb9b’ ‘~/tmp/scratch/xvfb-run.KJoZRG’   ‘~/tmp/scratch/xvfb-run.O9IIC1’ ‘~/tmp/scratch/xvfb-run.ODIrw6’   ‘~/tmp/scratch/xvfb-run.OnIPM6’ ‘~/tmp/scratch/xvfb-run.P0JU1k’   ‘~/tmp/scratch/xvfb-run.P5IXmN’ ‘~/tmp/scratch/xvfb-run.P6pOkx’   ‘~/tmp/scratch/xvfb-run.PFUXvx’ ‘~/tmp/scratch/xvfb-run.Q0XXZg’   ‘~/tmp/scratch/xvfb-run.Q9FVCb’ ‘~/tmp/scratch/xvfb-run.QFJfbN’   ‘~/tmp/scratch/xvfb-run.RtZi4x’ ‘~/tmp/scratch/xvfb-run.S3E4H2’   ‘~/tmp/scratch/xvfb-run.T2tr9w’ ‘~/tmp/scratch/xvfb-run.TkngpU’   ‘~/tmp/scratch/xvfb-run.TwDeBH’ ‘~/tmp/scratch/xvfb-run.U7qRzt’   ‘~/tmp/scratch/xvfb-run.W5GySv’ ‘~/tmp/scratch/xvfb-run.WgStAo’   ‘~/tmp/scratch/xvfb-run.XtihF5’ ‘~/tmp/scratch/xvfb-run.Z2hBdw’   ‘~/tmp/scratch/xvfb-run.ZRpzqE’ ‘~/tmp/scratch/xvfb-run.aaM4Tm’   ‘~/tmp/scratch/xvfb-run.au2D2Y’ ‘~/tmp/scratch/xvfb-run.bt9JVt’   ‘~/tmp/scratch/xvfb-run.cWtViz’ ‘~/tmp/scratch/xvfb-run.cwkK31’   ‘~/tmp/scratch/xvfb-run.dfnxHE’ ‘~/tmp/scratch/xvfb-run.fsodVS’   ‘~/tmp/scratch/xvfb-run.gK8wC0’ ‘~/tmp/scratch/xvfb-run.h4vWhS’   ‘~/tmp/scratch/xvfb-run.hGXlgc’ ‘~/tmp/scratch/xvfb-run.hUjq6N’   ‘~/tmp/scratch/xvfb-run.hYLNOR’ ‘~/tmp/scratch/xvfb-run.iR91KZ’   ‘~/tmp/scratch/xvfb-run.ieLX8M’ ‘~/tmp/scratch/xvfb-run.j9rDaR’   ‘~/tmp/scratch/xvfb-run.jtMHfH’ ‘~/tmp/scratch/xvfb-run.kSMRkN’   ‘~/tmp/scratch/xvfb-run.l2gDYo’ ‘~/tmp/scratch/xvfb-run.lcjGND’   ‘~/tmp/scratch/xvfb-run.lghlkC’ ‘~/tmp/scratch/xvfb-run.onWsHV’   ‘~/tmp/scratch/xvfb-run.pIkgkz’ ‘~/tmp/scratch/xvfb-run.pkdAb8’   ‘~/tmp/scratch/xvfb-run.qXHHLK’ ‘~/tmp/scratch/xvfb-run.r0YTH4’   ‘~/tmp/scratch/xvfb-run.rLDALa’ ‘~/tmp/scratch/xvfb-run.secPN0’   ‘~/tmp/scratch/xvfb-run.tE26xT’ ‘~/tmp/scratch/xvfb-run.tGdg1g’   ‘~/tmp/scratch/xvfb-run.tywjpt’ ‘~/tmp/scratch/xvfb-run.yztBYw’   ‘~/tmp/scratch/xvfb-run.zQKwGk’
• DONE

Status: 1 NOTE