• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 11:24:31 UTC
• checking for file ‘ComplexUpset/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ComplexUpset’ version ‘1.3.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] NOTE Maintainer: ‘Michał Krassowski <krassowski.michal+r@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘ComplexUpset’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/17s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] OK
• checking PDF version of manual ... [5s/8s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0Cbbd6’ ‘~/tmp/scratch/Rtmp0WWB6e’   ‘~/tmp/scratch/Rtmp0WaHDm’ ‘~/tmp/scratch/Rtmp14cHwh’   ‘~/tmp/scratch/Rtmp16Obvh’ ‘~/tmp/scratch/Rtmp1YusSS’   ‘~/tmp/scratch/Rtmp2G2bE7’ ‘~/tmp/scratch/Rtmp3L9Aps’   ‘~/tmp/scratch/Rtmp4BGYPE’ ‘~/tmp/scratch/Rtmp4LmWq5’   ‘~/tmp/scratch/Rtmp56QIrx’ ‘~/tmp/scratch/Rtmp58l9kr’   ‘~/tmp/scratch/Rtmp5GTAeZ’ ‘~/tmp/scratch/Rtmp5fv6Cw’   ‘~/tmp/scratch/Rtmp5r9pFf’ ‘~/tmp/scratch/Rtmp6U4zMf’   ‘~/tmp/scratch/Rtmp7MCDRN’ ‘~/tmp/scratch/Rtmp7UKoWA’   ‘~/tmp/scratch/Rtmp7VmZcO’ ‘~/tmp/scratch/Rtmp7kLiaj’   ‘~/tmp/scratch/Rtmp7pU94t’ ‘~/tmp/scratch/Rtmp8FBqI5’   ‘~/tmp/scratch/Rtmp8UhCvk’ ‘~/tmp/scratch/Rtmp8mQnsL’   ‘~/tmp/scratch/Rtmp9moHZN’ ‘~/tmp/scratch/RtmpAEFfOV’   ‘~/tmp/scratch/RtmpBEEmBj’ ‘~/tmp/scratch/RtmpBG2s3S’   ‘~/tmp/scratch/RtmpBeT0rp’ ‘~/tmp/scratch/RtmpCac23i’   ‘~/tmp/scratch/RtmpDgoZzu’ ‘~/tmp/scratch/RtmpGHLjZx’   ‘~/tmp/scratch/RtmpGmNn4U’ ‘~/tmp/scratch/RtmpHOqY0a’   ‘~/tmp/scratch/RtmpI7o3WW’ ‘~/tmp/scratch/RtmpIg0nH8’   ‘~/tmp/scratch/RtmpIhD6Qe’ ‘~/tmp/scratch/RtmpIpruvz’   ‘~/tmp/scratch/RtmpIsOmZ7’ ‘~/tmp/scratch/RtmpJCY4An’   ‘~/tmp/scratch/RtmpK8Xp8v’ ‘~/tmp/scratch/RtmpKCrnrN’   ‘~/tmp/scratch/RtmpKgyoz7’ ‘~/tmp/scratch/RtmpLFBZl3’   ‘~/tmp/scratch/RtmpLW6sEQ’ ‘~/tmp/scratch/RtmpLlMOvZ’   ‘~/tmp/scratch/RtmpMbqrJQ’ ‘~/tmp/scratch/RtmpN2x2JU’   ‘~/tmp/scratch/RtmpNl4Syc’ ‘~/tmp/scratch/RtmpO1el8f’   ‘~/tmp/scratch/RtmpO2UMdL’ ‘~/tmp/scratch/RtmpPTOnnN’   ‘~/tmp/scratch/RtmpQh06bz’ ‘~/tmp/scratch/RtmpR0TgeL’   ‘~/tmp/scratch/RtmpRDCnDm’ ‘~/tmp/scratch/RtmpRHHzMa’   ‘~/tmp/scratch/RtmpRX6wq0’ ‘~/tmp/scratch/RtmpRhhCfW’   ‘~/tmp/scratch/RtmpSIzONi’ ‘~/tmp/scratch/RtmpSiKkDG’   ‘~/tmp/scratch/RtmpT9nAnp’ ‘~/tmp/scratch/RtmpT9swTe’   ‘~/tmp/scratch/RtmpTB8VSo’ ‘~/tmp/scratch/RtmpTby49p’   ‘~/tmp/scratch/RtmpTctl6Y’ ‘~/tmp/scratch/RtmpToegex’   ‘~/tmp/scratch/RtmpTpHz4l’ ‘~/tmp/scratch/RtmpUdn0iJ’   ‘~/tmp/scratch/RtmpV8ZKj6’ ‘~/tmp/scratch/RtmpW36rIA’   ‘~/tmp/scratch/RtmpWIf1l5’ ‘~/tmp/scratch/RtmpWNuqXE’   ‘~/tmp/scratch/RtmpWX5py1’ ‘~/tmp/scratch/RtmpWo3E0G’   ‘~/tmp/scratch/RtmpX7sxln’ ‘~/tmp/scratch/RtmpXJhvgw’   ‘~/tmp/scratch/RtmpXlLRz8’ ‘~/tmp/scratch/RtmpY2Aike’   ‘~/tmp/scratch/RtmpY7zsZE’ ‘~/tmp/scratch/RtmpYA0blz’   ‘~/tmp/scratch/RtmpYZ8yj5’ ‘~/tmp/scratch/RtmpZuToWO’   ‘~/tmp/scratch/RtmpbBBtxg’ ‘~/tmp/scratch/RtmpbX8rF6’   ‘~/tmp/scratch/RtmpcArXKd’ ‘~/tmp/scratch/RtmpclnPkz’   ‘~/tmp/scratch/Rtmpd1K6XZ’ ‘~/tmp/scratch/RtmpdY0IPG’   ‘~/tmp/scratch/RtmpdrPqbd’ ‘~/tmp/scratch/RtmpeGbC5v’   ‘~/tmp/scratch/RtmpeqSCaF’ ‘~/tmp/scratch/RtmpfhhuUv’   ‘~/tmp/scratch/RtmpgBPFKV’ ‘~/tmp/scratch/RtmpgBebhg’   ‘~/tmp/scratch/Rtmph25WMI’ ‘~/tmp/scratch/Rtmph6QzWy’   ‘~/tmp/scratch/RtmphLgdcs’ ‘~/tmp/scratch/RtmphZAb2L’   ‘~/tmp/scratch/RtmphwR1zF’ ‘~/tmp/scratch/RtmpiGmNmd’   ‘~/tmp/scratch/RtmpiHKByy’ ‘~/tmp/scratch/RtmpiWHlBn’   ‘~/tmp/scratch/Rtmpj7qV3U’ ‘~/tmp/scratch/RtmpkToy59’   ‘~/tmp/scratch/RtmpmMv1cz’ ‘~/tmp/scratch/Rtmpme6jsT’   ‘~/tmp/scratch/RtmpmmG49j’ ‘~/tmp/scratch/RtmpmnwzBm’   ‘~/tmp/scratch/Rtmpmvld8f’ ‘~/tmp/scratch/RtmpnqSkIX’   ‘~/tmp/scratch/Rtmpoq5Djo’ ‘~/tmp/scratch/RtmppLsoNB’   ‘~/tmp/scratch/RtmppxfpoC’ ‘~/tmp/scratch/RtmpqbjeFF’   ‘~/tmp/scratch/RtmpqwMvA7’ ‘~/tmp/scratch/RtmprvO2Bn’   ‘~/tmp/scratch/RtmpsI8sN2’ ‘~/tmp/scratch/RtmpsREMVp’   ‘~/tmp/scratch/Rtmpsmxnor’ ‘~/tmp/scratch/RtmptwjtO1’   ‘~/tmp/scratch/RtmpuNMCge’ ‘~/tmp/scratch/Rtmpuf1GKe’   ‘~/tmp/scratch/Rtmpugjsc0’ ‘~/tmp/scratch/RtmpuksmCY’   ‘~/tmp/scratch/Rtmpv8HMfq’ ‘~/tmp/scratch/RtmpvnNDAG’   ‘~/tmp/scratch/Rtmpvy4zNS’ ‘~/tmp/scratch/RtmpvyvXxk’   ‘~/tmp/scratch/RtmpwUB2Sk’ ‘~/tmp/scratch/RtmpwWY7L5’   ‘~/tmp/scratch/RtmpwyW0CZ’ ‘~/tmp/scratch/Rtmpx27m2E’   ‘~/tmp/scratch/RtmpxFnJiB’ ‘~/tmp/scratch/RtmpxaOL9Y’   ‘~/tmp/scratch/RtmpxiFDxO’ ‘~/tmp/scratch/RtmpxikOrc’   ‘~/tmp/scratch/RtmpyQNJu7’ ‘~/tmp/scratch/RtmpyoP5I2’   ‘~/tmp/scratch/RtmpzOUPKo’ ‘~/tmp/scratch/cceTmQuV.s’   ‘~/tmp/scratch/xvfb-run.0FQyju’ ‘~/tmp/scratch/xvfb-run.0Ulaho’   ‘~/tmp/scratch/xvfb-run.0kjy8v’ ‘~/tmp/scratch/xvfb-run.0ljtOM’   ‘~/tmp/scratch/xvfb-run.1pXSuO’ ‘~/tmp/scratch/xvfb-run.2FOUGl’   ‘~/tmp/scratch/xvfb-run.426JfS’ ‘~/tmp/scratch/xvfb-run.4PLS3i’   ‘~/tmp/scratch/xvfb-run.4jmeO2’ ‘~/tmp/scratch/xvfb-run.5F5yNt’   ‘~/tmp/scratch/xvfb-run.6Xdvau’ ‘~/tmp/scratch/xvfb-run.91jk4a’   ‘~/tmp/scratch/xvfb-run.Bdtk2o’ ‘~/tmp/scratch/xvfb-run.CNH5YJ’   ‘~/tmp/scratch/xvfb-run.D6GCzc’ ‘~/tmp/scratch/xvfb-run.F3VdV2’   ‘~/tmp/scratch/xvfb-run.F8RzX0’ ‘~/tmp/scratch/xvfb-run.FI5smn’   ‘~/tmp/scratch/xvfb-run.FxIaV3’ ‘~/tmp/scratch/xvfb-run.GfqEPl’   ‘~/tmp/scratch/xvfb-run.Go1uNJ’ ‘~/tmp/scratch/xvfb-run.H6ADQH’   ‘~/tmp/scratch/xvfb-run.JN8Hcx’ ‘~/tmp/scratch/xvfb-run.LG10fU’   ‘~/tmp/scratch/xvfb-run.LLbelX’ ‘~/tmp/scratch/xvfb-run.NZUSF7’   ‘~/tmp/scratch/xvfb-run.Of0jWU’ ‘~/tmp/scratch/xvfb-run.QcbrxO’   ‘~/tmp/scratch/xvfb-run.RVZKbv’ ‘~/tmp/scratch/xvfb-run.SuxGsB’   ‘~/tmp/scratch/xvfb-run.T05GFF’ ‘~/tmp/scratch/xvfb-run.ZMBcG5’   ‘~/tmp/scratch/xvfb-run.Zf2IHD’ ‘~/tmp/scratch/xvfb-run.aDAJFs’   ‘~/tmp/scratch/xvfb-run.aKGeqB’ ‘~/tmp/scratch/xvfb-run.cWbZKi’   ‘~/tmp/scratch/xvfb-run.d8mNXh’ ‘~/tmp/scratch/xvfb-run.dLsgsX’   ‘~/tmp/scratch/xvfb-run.eqLAkB’ ‘~/tmp/scratch/xvfb-run.gFGRJH’   ‘~/tmp/scratch/xvfb-run.h3Bwok’ ‘~/tmp/scratch/xvfb-run.h4rkYZ’   ‘~/tmp/scratch/xvfb-run.iouiwV’ ‘~/tmp/scratch/xvfb-run.jhDbta’   ‘~/tmp/scratch/xvfb-run.oPdbeu’ ‘~/tmp/scratch/xvfb-run.ofPQJY’   ‘~/tmp/scratch/xvfb-run.qekRjY’ ‘~/tmp/scratch/xvfb-run.riXi0c’   ‘~/tmp/scratch/xvfb-run.sMuScp’ ‘~/tmp/scratch/xvfb-run.vWKR9l’   ‘~/tmp/scratch/xvfb-run.y9nOpr’
• DONE

Status: 2 NOTEs