• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 11:24:53 UTC
• checking for file ‘CohortSymmetry/DESCRIPTION’ ... OK
• this is package ‘CohortSymmetry’ version ‘0.3.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘CohortSymmetry’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/8s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [175s/239s] OK   Running ‘testthat.R’ [175s/239s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [211s/297s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0TUsV5’ ‘~/tmp/scratch/Rtmp0aLIJh’   ‘~/tmp/scratch/Rtmp0gJNpr’ ‘~/tmp/scratch/Rtmp1Bmn2p’   ‘~/tmp/scratch/Rtmp1D5GSD’ ‘~/tmp/scratch/Rtmp1EbuLm’   ‘~/tmp/scratch/Rtmp1xPi7G’ ‘~/tmp/scratch/Rtmp2OaVVF’   ‘~/tmp/scratch/Rtmp2bI06Y’ ‘~/tmp/scratch/Rtmp3KflZI’   ‘~/tmp/scratch/Rtmp3ZuTiq’ ‘~/tmp/scratch/Rtmp4NtgLy’   ‘~/tmp/scratch/Rtmp4Umjqe’ ‘~/tmp/scratch/Rtmp5LfAuN’   ‘~/tmp/scratch/Rtmp5cPyM5’ ‘~/tmp/scratch/Rtmp6NGirL’   ‘~/tmp/scratch/Rtmp6aB0Eo’ ‘~/tmp/scratch/Rtmp6kh6LB’   ‘~/tmp/scratch/Rtmp7azpa6’ ‘~/tmp/scratch/Rtmp7bKsVR’   ‘~/tmp/scratch/Rtmp7oZVj1’ ‘~/tmp/scratch/Rtmp7z1r9m’   ‘~/tmp/scratch/Rtmp8Jw8HT’ ‘~/tmp/scratch/Rtmp9D1azo’   ‘~/tmp/scratch/Rtmp9NMnFb’ ‘~/tmp/scratch/Rtmp9ZxV1u’   ‘~/tmp/scratch/Rtmp9fvLl4’ ‘~/tmp/scratch/Rtmp9sIhDA’   ‘~/tmp/scratch/Rtmp9yg0CB’ ‘~/tmp/scratch/RtmpA43gvX’   ‘~/tmp/scratch/RtmpAhwSIJ’ ‘~/tmp/scratch/RtmpB61S98’   ‘~/tmp/scratch/RtmpBQryhH’ ‘~/tmp/scratch/RtmpBsO3gh’   ‘~/tmp/scratch/RtmpCL9KIW’ ‘~/tmp/scratch/RtmpCxUEdQ’   ‘~/tmp/scratch/RtmpDsPojd’ ‘~/tmp/scratch/RtmpEHiYC1’   ‘~/tmp/scratch/RtmpGQCcZ0’ ‘~/tmp/scratch/RtmpGUq4TX’   ‘~/tmp/scratch/RtmpH0nB3Y’ ‘~/tmp/scratch/RtmpH4djBG’   ‘~/tmp/scratch/RtmpHaidzA’ ‘~/tmp/scratch/RtmpHmuXaJ’   ‘~/tmp/scratch/RtmpIb19WH’ ‘~/tmp/scratch/RtmpIbaln9’   ‘~/tmp/scratch/RtmpIkxmeP’ ‘~/tmp/scratch/RtmpIp9Kjo’   ‘~/tmp/scratch/RtmpItGXL4’ ‘~/tmp/scratch/RtmpJuqq7S’   ‘~/tmp/scratch/RtmpK0IsrV’ ‘~/tmp/scratch/RtmpKTSf2P’   ‘~/tmp/scratch/RtmpKaSzlW’ ‘~/tmp/scratch/RtmpKcr3wM’   ‘~/tmp/scratch/RtmpLEtwrg’ ‘~/tmp/scratch/RtmpLcUYIn’   ‘~/tmp/scratch/RtmpLgwdpR’ ‘~/tmp/scratch/RtmpLkk6y2’   ‘~/tmp/scratch/RtmpMIV8Gx’ ‘~/tmp/scratch/RtmpMXqXhX’   ‘~/tmp/scratch/RtmpNtoNQF’ ‘~/tmp/scratch/RtmpO9mNdr’   ‘~/tmp/scratch/RtmpOONCdM’ ‘~/tmp/scratch/RtmpOqlxUZ’   ‘~/tmp/scratch/RtmpPprYCP’ ‘~/tmp/scratch/RtmpQBgrsx’   ‘~/tmp/scratch/RtmpQQGCXy’ ‘~/tmp/scratch/RtmpQWdxnw’   ‘~/tmp/scratch/RtmpQe7E2N’ ‘~/tmp/scratch/RtmpQp0514’   ‘~/tmp/scratch/RtmpRUi6ws’ ‘~/tmp/scratch/RtmpRWRVn0’   ‘~/tmp/scratch/RtmpSOee0s’ ‘~/tmp/scratch/RtmpSRgEJf’   ‘~/tmp/scratch/RtmpTXaEgN’ ‘~/tmp/scratch/RtmpTezYqG’   ‘~/tmp/scratch/RtmpTwPZ6Z’ ‘~/tmp/scratch/RtmpVFX4tX’   ‘~/tmp/scratch/RtmpVWUiFK’ ‘~/tmp/scratch/RtmpVYaqkA’   ‘~/tmp/scratch/RtmpVflOnD’ ‘~/tmp/scratch/RtmpVzrmjH’   ‘~/tmp/scratch/RtmpW2R4km’ ‘~/tmp/scratch/RtmpW4ka6E’   ‘~/tmp/scratch/RtmpW9mrl8’ ‘~/tmp/scratch/RtmpWZxE3E’   ‘~/tmp/scratch/RtmpWlW3LH’ ‘~/tmp/scratch/RtmpWx7JLj’   ‘~/tmp/scratch/RtmpXAd3vQ’ ‘~/tmp/scratch/RtmpXCVdZB’   ‘~/tmp/scratch/RtmpXqQa2K’ ‘~/tmp/scratch/RtmpXwYSJT’   ‘~/tmp/scratch/RtmpYhdDbj’ ‘~/tmp/scratch/RtmpYvGwb9’   ‘~/tmp/scratch/RtmpZ1jkg7’ ‘~/tmp/scratch/RtmpZKPnR5’   ‘~/tmp/scratch/RtmpZd7WQy’ ‘~/tmp/scratch/RtmpZkHcvP’   ‘~/tmp/scratch/RtmpZmKH6R’ ‘~/tmp/scratch/RtmpZmyqg5’   ‘~/tmp/scratch/RtmpaTEHkc’ ‘~/tmp/scratch/RtmpazEN0M’   ‘~/tmp/scratch/Rtmpb8gRlU’ ‘~/tmp/scratch/RtmpcVATiF’   ‘~/tmp/scratch/RtmpcXvRPo’ ‘~/tmp/scratch/RtmpdJx1Qq’   ‘~/tmp/scratch/RtmpdfxAo8’ ‘~/tmp/scratch/RtmpdhwkLi’   ‘~/tmp/scratch/RtmpdkueZM’ ‘~/tmp/scratch/RtmpdxSkra’   ‘~/tmp/scratch/Rtmpe6rKD7’ ‘~/tmp/scratch/RtmpeCwjwO’   ‘~/tmp/scratch/RtmpfOOygf’ ‘~/tmp/scratch/Rtmpfl7R7H’   ‘~/tmp/scratch/RtmpgjLk3T’ ‘~/tmp/scratch/Rtmpgly2rL’   ‘~/tmp/scratch/RtmpgshIR3’ ‘~/tmp/scratch/RtmphLKYlI’   ‘~/tmp/scratch/RtmphRWrcC’ ‘~/tmp/scratch/RtmphTipYY’   ‘~/tmp/scratch/RtmpiTgO2H’ ‘~/tmp/scratch/RtmpidxSgC’   ‘~/tmp/scratch/RtmpiuCnW9’ ‘~/tmp/scratch/Rtmpiv1CU0’   ‘~/tmp/scratch/RtmpiykaRc’ ‘~/tmp/scratch/RtmpjFRPE6’   ‘~/tmp/scratch/RtmpjjYLjy’ ‘~/tmp/scratch/Rtmpk4zAYT’   ‘~/tmp/scratch/RtmpkHu61R’ ‘~/tmp/scratch/RtmpkvhklD’   ‘~/tmp/scratch/RtmplU56WU’ ‘~/tmp/scratch/RtmpllDI08’   ‘~/tmp/scratch/RtmplwM9CF’ ‘~/tmp/scratch/RtmpmeHBZe’   ‘~/tmp/scratch/Rtmpms6XtB’ ‘~/tmp/scratch/RtmpmvRKvh’   ‘~/tmp/scratch/Rtmpn94aTt’ ‘~/tmp/scratch/RtmpnS1RGa’   ‘~/tmp/scratch/RtmpnZSF5i’ ‘~/tmp/scratch/Rtmpo9WKcA’   ‘~/tmp/scratch/RtmpoMDyPy’ ‘~/tmp/scratch/RtmpoaeoOT’   ‘~/tmp/scratch/RtmppsItvf’ ‘~/tmp/scratch/Rtmpq5XG8v’   ‘~/tmp/scratch/RtmpqLA9GK’ ‘~/tmp/scratch/RtmpqLBepL’   ‘~/tmp/scratch/Rtmpr6Webe’ ‘~/tmp/scratch/RtmprGceyY’   ‘~/tmp/scratch/RtmprmzFTK’ ‘~/tmp/scratch/Rtmps9vwU7’   ‘~/tmp/scratch/Rtmpsdz2T6’ ‘~/tmp/scratch/RtmptBuOz9’   ‘~/tmp/scratch/RtmptHarv0’ ‘~/tmp/scratch/RtmptTmvj7’   ‘~/tmp/scratch/RtmptoFH5r’ ‘~/tmp/scratch/RtmptsYpWr’   ‘~/tmp/scratch/Rtmpu1aivN’ ‘~/tmp/scratch/Rtmpuc4Z9R’   ‘~/tmp/scratch/Rtmpul109A’ ‘~/tmp/scratch/Rtmpv5IgKI’   ‘~/tmp/scratch/Rtmpv5VCBq’ ‘~/tmp/scratch/Rtmpv5zlzj’   ‘~/tmp/scratch/RtmpvNwsqH’ ‘~/tmp/scratch/RtmpvPGOxM’   ‘~/tmp/scratch/RtmpvZwBJE’ ‘~/tmp/scratch/RtmpvdmFcf’   ‘~/tmp/scratch/RtmpvnKx0o’ ‘~/tmp/scratch/RtmpwgMEn0’   ‘~/tmp/scratch/RtmpxE0yTl’ ‘~/tmp/scratch/RtmpxR5415’   ‘~/tmp/scratch/Rtmpy2qBO0’ ‘~/tmp/scratch/RtmpyBF6pc’   ‘~/tmp/scratch/RtmpyXSJh7’ ‘~/tmp/scratch/xvfb-run.0lyOkE’   ‘~/tmp/scratch/xvfb-run.29x4v2’ ‘~/tmp/scratch/xvfb-run.3MjqCw’   ‘~/tmp/scratch/xvfb-run.3N4AOD’ ‘~/tmp/scratch/xvfb-run.3SE4QN’   ‘~/tmp/scratch/xvfb-run.3xUylW’ ‘~/tmp/scratch/xvfb-run.4ZzYOx’   ‘~/tmp/scratch/xvfb-run.4eWiMi’ ‘~/tmp/scratch/xvfb-run.61uTjT’   ‘~/tmp/scratch/xvfb-run.6LJA1h’ ‘~/tmp/scratch/xvfb-run.7ui8ny’   ‘~/tmp/scratch/xvfb-run.81SAAZ’ ‘~/tmp/scratch/xvfb-run.8G4Nok’   ‘~/tmp/scratch/xvfb-run.93VjJX’ ‘~/tmp/scratch/xvfb-run.B6KijQ’   ‘~/tmp/scratch/xvfb-run.Bwp47n’ ‘~/tmp/scratch/xvfb-run.CPSIKZ’   ‘~/tmp/scratch/xvfb-run.Ci6Ug1’ ‘~/tmp/scratch/xvfb-run.D4jqoY’   ‘~/tmp/scratch/xvfb-run.GBIFPR’ ‘~/tmp/scratch/xvfb-run.Gz51mZ’   ‘~/tmp/scratch/xvfb-run.HatsMn’ ‘~/tmp/scratch/xvfb-run.HxcEs8’   ‘~/tmp/scratch/xvfb-run.Iwyb9b’ ‘~/tmp/scratch/xvfb-run.Ks87K7’   ‘~/tmp/scratch/xvfb-run.KzjPoX’ ‘~/tmp/scratch/xvfb-run.OnIPM6’   ‘~/tmp/scratch/xvfb-run.P5IXmN’ ‘~/tmp/scratch/xvfb-run.Q0XXZg’   ‘~/tmp/scratch/xvfb-run.QMF7Ub’ ‘~/tmp/scratch/xvfb-run.Qdhz4B’   ‘~/tmp/scratch/xvfb-run.Ra9uqf’ ‘~/tmp/scratch/xvfb-run.S3E4H2’   ‘~/tmp/scratch/xvfb-run.T2tr9w’ ‘~/tmp/scratch/xvfb-run.TlX29O’   ‘~/tmp/scratch/xvfb-run.TwDeBH’ ‘~/tmp/scratch/xvfb-run.U7qRzt’   ‘~/tmp/scratch/xvfb-run.UZNHvw’ ‘~/tmp/scratch/xvfb-run.VOhPn1’   ‘~/tmp/scratch/xvfb-run.Vf1Hgx’ ‘~/tmp/scratch/xvfb-run.Wd8nCn’   ‘~/tmp/scratch/xvfb-run.X5lTiY’ ‘~/tmp/scratch/xvfb-run.XMmWJ6’   ‘~/tmp/scratch/xvfb-run.YX4Da7’ ‘~/tmp/scratch/xvfb-run.Yq7GF2’   ‘~/tmp/scratch/xvfb-run.ZRpzqE’ ‘~/tmp/scratch/xvfb-run.ZfB3Yi’   ‘~/tmp/scratch/xvfb-run.au2D2Y’ ‘~/tmp/scratch/xvfb-run.bvNhVF’   ‘~/tmp/scratch/xvfb-run.cWtViz’ ‘~/tmp/scratch/xvfb-run.ccuGem’   ‘~/tmp/scratch/xvfb-run.d5dvr7’ ‘~/tmp/scratch/xvfb-run.dR9fGA’   ‘~/tmp/scratch/xvfb-run.dfnxHE’ ‘~/tmp/scratch/xvfb-run.dvvrLG’   ‘~/tmp/scratch/xvfb-run.gK8wC0’ ‘~/tmp/scratch/xvfb-run.greXD8’   ‘~/tmp/scratch/xvfb-run.h7DQm5’ ‘~/tmp/scratch/xvfb-run.hGXlgc’   ‘~/tmp/scratch/xvfb-run.hUjq6N’ ‘~/tmp/scratch/xvfb-run.hYLNOR’   ‘~/tmp/scratch/xvfb-run.kE4h7X’ ‘~/tmp/scratch/xvfb-run.kMKSFc’   ‘~/tmp/scratch/xvfb-run.kSQRYj’ ‘~/tmp/scratch/xvfb-run.lghlkC’   ‘~/tmp/scratch/xvfb-run.mEP3Ws’ ‘~/tmp/scratch/xvfb-run.oYURJB’   ‘~/tmp/scratch/xvfb-run.odKsF3’ ‘~/tmp/scratch/xvfb-run.pCM5xP’   ‘~/tmp/scratch/xvfb-run.pkdAb8’ ‘~/tmp/scratch/xvfb-run.qIKud2’   ‘~/tmp/scratch/xvfb-run.qhrqx8’ ‘~/tmp/scratch/xvfb-run.qnF1WV’   ‘~/tmp/scratch/xvfb-run.r2hgli’ ‘~/tmp/scratch/xvfb-run.tE26xT’   ‘~/tmp/scratch/xvfb-run.uhx4zO’ ‘~/tmp/scratch/xvfb-run.vM2SLX’   ‘~/tmp/scratch/xvfb-run.vo9poA’ ‘~/tmp/scratch/xvfb-run.wXgFhx’   ‘~/tmp/scratch/xvfb-run.wybvrg’ ‘~/tmp/scratch/xvfb-run.yNq0Qh’   ‘~/tmp/scratch/xvfb-run.zOCftO’
• DONE

Status: 1 NOTE