• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 11:24:53 UTC
• checking for file ‘CohortSurvival/DESCRIPTION’ ... OK
• this is package ‘CohortSurvival’ version ‘1.1.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘CohortSurvival’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/13s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [114s/154s] OK   Running ‘testthat.R’ [114s/154s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [224s/302s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0HVQwv’ ‘~/tmp/scratch/Rtmp0SMqCF’   ‘~/tmp/scratch/Rtmp0TUsV5’ ‘~/tmp/scratch/Rtmp0aLIJh’   ‘~/tmp/scratch/Rtmp0dKOrn’ ‘~/tmp/scratch/Rtmp0gJNpr’   ‘~/tmp/scratch/Rtmp1BhhY8’ ‘~/tmp/scratch/Rtmp1Bmn2p’   ‘~/tmp/scratch/Rtmp1VHAbC’ ‘~/tmp/scratch/Rtmp1o5MzL’   ‘~/tmp/scratch/Rtmp1xPi7G’ ‘~/tmp/scratch/Rtmp2bI06Y’   ‘~/tmp/scratch/Rtmp3DYeGZ’ ‘~/tmp/scratch/Rtmp3ZuTiq’   ‘~/tmp/scratch/Rtmp4NtgLy’ ‘~/tmp/scratch/Rtmp572Rpi’   ‘~/tmp/scratch/Rtmp5NLZVU’ ‘~/tmp/scratch/Rtmp5ZTozu’   ‘~/tmp/scratch/Rtmp5cPyM5’ ‘~/tmp/scratch/Rtmp5g1Lof’   ‘~/tmp/scratch/Rtmp5vkTvi’ ‘~/tmp/scratch/Rtmp7GHsNX’   ‘~/tmp/scratch/Rtmp7azpa6’ ‘~/tmp/scratch/Rtmp7bKsVR’   ‘~/tmp/scratch/Rtmp850JY3’ ‘~/tmp/scratch/Rtmp8IX0CM’   ‘~/tmp/scratch/Rtmp94Mysz’ ‘~/tmp/scratch/Rtmp9EZieu’   ‘~/tmp/scratch/Rtmp9Md59s’ ‘~/tmp/scratch/Rtmp9XY3cG’   ‘~/tmp/scratch/Rtmp9fvLl4’ ‘~/tmp/scratch/Rtmp9hkPg6’   ‘~/tmp/scratch/Rtmp9l3sF9’ ‘~/tmp/scratch/RtmpASFHpm’   ‘~/tmp/scratch/RtmpAT7SNP’ ‘~/tmp/scratch/RtmpBfgPkZ’   ‘~/tmp/scratch/RtmpCL9KIW’ ‘~/tmp/scratch/RtmpD3I0Lt’   ‘~/tmp/scratch/RtmpDPpAFC’ ‘~/tmp/scratch/RtmpEBPoQS’   ‘~/tmp/scratch/RtmpEGeGvZ’ ‘~/tmp/scratch/RtmpFJLxp5’   ‘~/tmp/scratch/RtmpFK0SxT’ ‘~/tmp/scratch/RtmpFK3mm8’   ‘~/tmp/scratch/RtmpFU2GjK’ ‘~/tmp/scratch/RtmpFjyo50’   ‘~/tmp/scratch/RtmpFt1Ey2’ ‘~/tmp/scratch/RtmpFxh3oz’   ‘~/tmp/scratch/RtmpGQCcZ0’ ‘~/tmp/scratch/RtmpH4djBG’   ‘~/tmp/scratch/RtmpHmuXaJ’ ‘~/tmp/scratch/RtmpHv5Ae3’   ‘~/tmp/scratch/RtmpI21jri’ ‘~/tmp/scratch/RtmpIcWUP6’   ‘~/tmp/scratch/RtmpIp9Kjo’ ‘~/tmp/scratch/RtmpJ5J979’   ‘~/tmp/scratch/RtmpJmlgGI’ ‘~/tmp/scratch/RtmpJzP0W3’   ‘~/tmp/scratch/RtmpK0IsrV’ ‘~/tmp/scratch/RtmpKEz9Xa’   ‘~/tmp/scratch/RtmpKNXgwG’ ‘~/tmp/scratch/RtmpMJZUIY’   ‘~/tmp/scratch/RtmpMy7as6’ ‘~/tmp/scratch/RtmpNdMCJm’   ‘~/tmp/scratch/RtmpNtoNQF’ ‘~/tmp/scratch/RtmpNuYlYK’   ‘~/tmp/scratch/RtmpO0pINM’ ‘~/tmp/scratch/RtmpO9mNdr’   ‘~/tmp/scratch/RtmpOPu9FL’ ‘~/tmp/scratch/RtmpOcTv7b’   ‘~/tmp/scratch/RtmpP1pccn’ ‘~/tmp/scratch/RtmpPDCItt’   ‘~/tmp/scratch/RtmpPOuji8’ ‘~/tmp/scratch/RtmpPajp2D’   ‘~/tmp/scratch/RtmpPbFxb2’ ‘~/tmp/scratch/RtmpPxH2hO’   ‘~/tmp/scratch/RtmpPzuLZ0’ ‘~/tmp/scratch/RtmpQI64AR’   ‘~/tmp/scratch/RtmpR7UMnW’ ‘~/tmp/scratch/RtmpRaXUHE’   ‘~/tmp/scratch/RtmpS6VmBW’ ‘~/tmp/scratch/RtmpS7Mmi7’   ‘~/tmp/scratch/RtmpSUACCH’ ‘~/tmp/scratch/RtmpSpWsiq’   ‘~/tmp/scratch/RtmpT0C9sM’ ‘~/tmp/scratch/RtmpT1H8wz’   ‘~/tmp/scratch/RtmpTXaEgN’ ‘~/tmp/scratch/RtmpTkbTyM’   ‘~/tmp/scratch/RtmpU0tDjp’ ‘~/tmp/scratch/RtmpUTWk3A’   ‘~/tmp/scratch/RtmpUlsw6Z’ ‘~/tmp/scratch/RtmpUq59na’   ‘~/tmp/scratch/RtmpVULc3F’ ‘~/tmp/scratch/RtmpVey6XP’   ‘~/tmp/scratch/RtmpVzrmjH’ ‘~/tmp/scratch/RtmpW6YRqx’   ‘~/tmp/scratch/RtmpWFAoPe’ ‘~/tmp/scratch/RtmpWLC6Cy’   ‘~/tmp/scratch/RtmpWMNURh’ ‘~/tmp/scratch/RtmpWOmANT’   ‘~/tmp/scratch/RtmpWiReH0’ ‘~/tmp/scratch/RtmpWwcy8F’   ‘~/tmp/scratch/RtmpZd7WQy’ ‘~/tmp/scratch/RtmpZkHcvP’   ‘~/tmp/scratch/RtmpZq8pC3’ ‘~/tmp/scratch/RtmpaFGRB2’   ‘~/tmp/scratch/RtmpaHoaO2’ ‘~/tmp/scratch/RtmpagSrq4’   ‘~/tmp/scratch/RtmparwHUi’ ‘~/tmp/scratch/RtmpazEN0M’   ‘~/tmp/scratch/RtmpbASzXQ’ ‘~/tmp/scratch/RtmpbpPy4Z’   ‘~/tmp/scratch/Rtmpc5ygne’ ‘~/tmp/scratch/RtmpcIUqik’   ‘~/tmp/scratch/RtmpceGeUv’ ‘~/tmp/scratch/Rtmpcq8tVg’   ‘~/tmp/scratch/RtmpdKVIWf’ ‘~/tmp/scratch/RtmpgekYWV’   ‘~/tmp/scratch/RtmpgjLk3T’ ‘~/tmp/scratch/Rtmph9eQ0K’   ‘~/tmp/scratch/RtmphHysXl’ ‘~/tmp/scratch/RtmphbcawF’   ‘~/tmp/scratch/RtmpiJgNLg’ ‘~/tmp/scratch/RtmpiPOi7n’   ‘~/tmp/scratch/RtmpiykaRc’ ‘~/tmp/scratch/Rtmpj8lIZf’   ‘~/tmp/scratch/RtmpjFXTM3’ ‘~/tmp/scratch/RtmpjVqbXs’   ‘~/tmp/scratch/RtmpjXytda’ ‘~/tmp/scratch/Rtmpk2039s’   ‘~/tmp/scratch/Rtmpk4cUUF’ ‘~/tmp/scratch/RtmpkHu61R’   ‘~/tmp/scratch/RtmpkTp3UR’ ‘~/tmp/scratch/RtmplMRKGN’   ‘~/tmp/scratch/Rtmpll1eSR’ ‘~/tmp/scratch/Rtmpm5hkoX’   ‘~/tmp/scratch/Rtmpms6XtB’ ‘~/tmp/scratch/Rtmpn2oiiU’   ‘~/tmp/scratch/Rtmpn5fcC0’ ‘~/tmp/scratch/RtmpnZSF5i’   ‘~/tmp/scratch/Rtmpo5JhA9’ ‘~/tmp/scratch/Rtmpo9WKcA’   ‘~/tmp/scratch/RtmpoOOpER’ ‘~/tmp/scratch/Rtmpp2RZle’   ‘~/tmp/scratch/Rtmpp2unmM’ ‘~/tmp/scratch/RtmppsItvf’   ‘~/tmp/scratch/RtmpqWJMJG’ ‘~/tmp/scratch/Rtmpqsowo4’   ‘~/tmp/scratch/Rtmpsdz2T6’ ‘~/tmp/scratch/RtmptanO0g’   ‘~/tmp/scratch/RtmpuNpeAx’ ‘~/tmp/scratch/Rtmpul109A’   ‘~/tmp/scratch/Rtmpv5zlzj’ ‘~/tmp/scratch/RtmpvmyPoK’   ‘~/tmp/scratch/RtmpvqmMxy’ ‘~/tmp/scratch/Rtmpx2meHf’   ‘~/tmp/scratch/RtmpxP13Sm’ ‘~/tmp/scratch/RtmpxV9k7E’   ‘~/tmp/scratch/RtmpxY2EJB’ ‘~/tmp/scratch/RtmpxYZRfZ’   ‘~/tmp/scratch/RtmpxYhZ4N’ ‘~/tmp/scratch/Rtmpxfj25K’   ‘~/tmp/scratch/Rtmpy0ABZm’ ‘~/tmp/scratch/RtmpyBF6pc’   ‘~/tmp/scratch/RtmpyEuwE9’ ‘~/tmp/scratch/RtmpyIhxaz’   ‘~/tmp/scratch/RtmpyVLjeS’ ‘~/tmp/scratch/RtmpydBrX3’   ‘~/tmp/scratch/RtmpyeSbae’ ‘~/tmp/scratch/Rtmpzp7MhZ’   ‘~/tmp/scratch/RtmpzrYFzS’ ‘~/tmp/scratch/xvfb-run.2L0wJ0’   ‘~/tmp/scratch/xvfb-run.39FSzQ’ ‘~/tmp/scratch/xvfb-run.3MjqCw’   ‘~/tmp/scratch/xvfb-run.3SE4QN’ ‘~/tmp/scratch/xvfb-run.4eWiMi’   ‘~/tmp/scratch/xvfb-run.6LJA1h’ ‘~/tmp/scratch/xvfb-run.81SAAZ’   ‘~/tmp/scratch/xvfb-run.8G4Nok’ ‘~/tmp/scratch/xvfb-run.8P33cc’   ‘~/tmp/scratch/xvfb-run.8nZ8GY’ ‘~/tmp/scratch/xvfb-run.8ttSS3’   ‘~/tmp/scratch/xvfb-run.8zhyxU’ ‘~/tmp/scratch/xvfb-run.910et1’   ‘~/tmp/scratch/xvfb-run.9fLRgZ’ ‘~/tmp/scratch/xvfb-run.AV5KYt’   ‘~/tmp/scratch/xvfb-run.ArSKKI’ ‘~/tmp/scratch/xvfb-run.AydCy2’   ‘~/tmp/scratch/xvfb-run.Bwp47n’ ‘~/tmp/scratch/xvfb-run.CPSIKZ’   ‘~/tmp/scratch/xvfb-run.D4jqoY’ ‘~/tmp/scratch/xvfb-run.DDRDCr’   ‘~/tmp/scratch/xvfb-run.GBIFPR’ ‘~/tmp/scratch/xvfb-run.HahNpz’   ‘~/tmp/scratch/xvfb-run.HgTt0q’ ‘~/tmp/scratch/xvfb-run.HxcEs8’   ‘~/tmp/scratch/xvfb-run.I3KycF’ ‘~/tmp/scratch/xvfb-run.Iwyb9b’   ‘~/tmp/scratch/xvfb-run.KJoZRG’ ‘~/tmp/scratch/xvfb-run.O9IIC1’   ‘~/tmp/scratch/xvfb-run.ODIrw6’ ‘~/tmp/scratch/xvfb-run.OnIPM6’   ‘~/tmp/scratch/xvfb-run.P0JU1k’ ‘~/tmp/scratch/xvfb-run.P5IXmN’   ‘~/tmp/scratch/xvfb-run.P6pOkx’ ‘~/tmp/scratch/xvfb-run.PFUXvx’   ‘~/tmp/scratch/xvfb-run.Q0XXZg’ ‘~/tmp/scratch/xvfb-run.Q9FVCb’   ‘~/tmp/scratch/xvfb-run.QFJfbN’ ‘~/tmp/scratch/xvfb-run.RtZi4x’   ‘~/tmp/scratch/xvfb-run.S3E4H2’ ‘~/tmp/scratch/xvfb-run.T2tr9w’   ‘~/tmp/scratch/xvfb-run.TkngpU’ ‘~/tmp/scratch/xvfb-run.TwDeBH’   ‘~/tmp/scratch/xvfb-run.U7qRzt’ ‘~/tmp/scratch/xvfb-run.W5GySv’   ‘~/tmp/scratch/xvfb-run.WgStAo’ ‘~/tmp/scratch/xvfb-run.XtihF5’   ‘~/tmp/scratch/xvfb-run.Z2hBdw’ ‘~/tmp/scratch/xvfb-run.ZRpzqE’   ‘~/tmp/scratch/xvfb-run.aaM4Tm’ ‘~/tmp/scratch/xvfb-run.au2D2Y’   ‘~/tmp/scratch/xvfb-run.bt9JVt’ ‘~/tmp/scratch/xvfb-run.cWtViz’   ‘~/tmp/scratch/xvfb-run.cwkK31’ ‘~/tmp/scratch/xvfb-run.dfnxHE’   ‘~/tmp/scratch/xvfb-run.fsodVS’ ‘~/tmp/scratch/xvfb-run.gK8wC0’   ‘~/tmp/scratch/xvfb-run.h4vWhS’ ‘~/tmp/scratch/xvfb-run.hGXlgc’   ‘~/tmp/scratch/xvfb-run.hUjq6N’ ‘~/tmp/scratch/xvfb-run.hYLNOR’   ‘~/tmp/scratch/xvfb-run.iR91KZ’ ‘~/tmp/scratch/xvfb-run.ieLX8M’   ‘~/tmp/scratch/xvfb-run.j9rDaR’ ‘~/tmp/scratch/xvfb-run.jtMHfH’   ‘~/tmp/scratch/xvfb-run.kSMRkN’ ‘~/tmp/scratch/xvfb-run.l2gDYo’   ‘~/tmp/scratch/xvfb-run.lcjGND’ ‘~/tmp/scratch/xvfb-run.lghlkC’   ‘~/tmp/scratch/xvfb-run.onWsHV’ ‘~/tmp/scratch/xvfb-run.pIkgkz’   ‘~/tmp/scratch/xvfb-run.pkdAb8’ ‘~/tmp/scratch/xvfb-run.qXHHLK’   ‘~/tmp/scratch/xvfb-run.rLDALa’ ‘~/tmp/scratch/xvfb-run.secPN0’   ‘~/tmp/scratch/xvfb-run.tGdg1g’ ‘~/tmp/scratch/xvfb-run.tywjpt’   ‘~/tmp/scratch/xvfb-run.xX4xsM’ ‘~/tmp/scratch/xvfb-run.yztBYw’   ‘~/tmp/scratch/xvfb-run.zQKwGk’
• DONE

Status: 1 NOTE