• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 11:25:19 UTC
• checking for file ‘CohortSurvival/DESCRIPTION’ ... OK
• this is package ‘CohortSurvival’ version ‘1.1.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘CohortSurvival’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/11s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [113s/148s] OK   Running ‘testthat.R’ [113s/148s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [243s/314s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0kvKHM’ ‘~/tmp/scratch/Rtmp0zxeka’   ‘~/tmp/scratch/Rtmp1KXbND’ ‘~/tmp/scratch/Rtmp2fBxgh’   ‘~/tmp/scratch/Rtmp3RB9rc’ ‘~/tmp/scratch/Rtmp3gGuMw’   ‘~/tmp/scratch/Rtmp3ggZlK’ ‘~/tmp/scratch/Rtmp3tCK85’   ‘~/tmp/scratch/Rtmp44p0z9’ ‘~/tmp/scratch/Rtmp44p474’   ‘~/tmp/scratch/Rtmp4RskqG’ ‘~/tmp/scratch/Rtmp4VGEqA’   ‘~/tmp/scratch/Rtmp4suT2s’ ‘~/tmp/scratch/Rtmp4tQYRu’   ‘~/tmp/scratch/Rtmp58Y6v8’ ‘~/tmp/scratch/Rtmp5JkbX4’   ‘~/tmp/scratch/Rtmp5OzZk6’ ‘~/tmp/scratch/Rtmp7HuEBS’   ‘~/tmp/scratch/Rtmp7P1E82’ ‘~/tmp/scratch/Rtmp7QUi9t’   ‘~/tmp/scratch/Rtmp7YxFnX’ ‘~/tmp/scratch/Rtmp7eQF6H’   ‘~/tmp/scratch/Rtmp7qoX07’ ‘~/tmp/scratch/Rtmp8NvJvy’   ‘~/tmp/scratch/Rtmp8ehwzH’ ‘~/tmp/scratch/Rtmp9Beyt7’   ‘~/tmp/scratch/Rtmp9HwyFL’ ‘~/tmp/scratch/Rtmp9zgTid’   ‘~/tmp/scratch/RtmpAGN5NQ’ ‘~/tmp/scratch/RtmpAHd8Sq’   ‘~/tmp/scratch/RtmpAZNOOx’ ‘~/tmp/scratch/RtmpAzv4nZ’   ‘~/tmp/scratch/RtmpBDb4dC’ ‘~/tmp/scratch/RtmpBRLHdR’   ‘~/tmp/scratch/RtmpBSRxD4’ ‘~/tmp/scratch/RtmpCwI5ZG’   ‘~/tmp/scratch/RtmpD0hHlb’ ‘~/tmp/scratch/RtmpEM4gUb’   ‘~/tmp/scratch/RtmpEMfKJ9’ ‘~/tmp/scratch/RtmpEjQCfg’   ‘~/tmp/scratch/RtmpEsPtSh’ ‘~/tmp/scratch/RtmpEt87gg’   ‘~/tmp/scratch/RtmpF6aYTp’ ‘~/tmp/scratch/RtmpFK9RwS’   ‘~/tmp/scratch/RtmpFYCrwI’ ‘~/tmp/scratch/RtmpFgBcoZ’   ‘~/tmp/scratch/RtmpFuaZIf’ ‘~/tmp/scratch/RtmpFvPQLy’   ‘~/tmp/scratch/RtmpGKNOE4’ ‘~/tmp/scratch/RtmpGNDuXG’   ‘~/tmp/scratch/RtmpGs1vIk’ ‘~/tmp/scratch/RtmpGtv2cN’   ‘~/tmp/scratch/RtmpH7SmTB’ ‘~/tmp/scratch/RtmpHBogW8’   ‘~/tmp/scratch/RtmpHYF0SY’ ‘~/tmp/scratch/RtmpHcVExn’   ‘~/tmp/scratch/RtmpHlJ06J’ ‘~/tmp/scratch/RtmpHr1KPd’   ‘~/tmp/scratch/RtmpIFybrx’ ‘~/tmp/scratch/RtmpKd89Ga’   ‘~/tmp/scratch/RtmpLLVT4U’ ‘~/tmp/scratch/RtmpMRcPLj’   ‘~/tmp/scratch/RtmpMbZ9ld’ ‘~/tmp/scratch/RtmpMpaymA’   ‘~/tmp/scratch/RtmpN5PpyI’ ‘~/tmp/scratch/RtmpOBfY6K’   ‘~/tmp/scratch/RtmpPeuZTb’ ‘~/tmp/scratch/RtmpPmHhjL’   ‘~/tmp/scratch/RtmpPqxn2P’ ‘~/tmp/scratch/RtmpPrJnYO’   ‘~/tmp/scratch/RtmpRNKMVf’ ‘~/tmp/scratch/RtmpRh47Ia’   ‘~/tmp/scratch/RtmpSOlBme’ ‘~/tmp/scratch/RtmpTiHJeK’   ‘~/tmp/scratch/RtmpToAp9b’ ‘~/tmp/scratch/RtmpUwUZAW’   ‘~/tmp/scratch/RtmpVaQfig’ ‘~/tmp/scratch/RtmpW8QB8e’   ‘~/tmp/scratch/RtmpWrxe7j’ ‘~/tmp/scratch/RtmpX9XkOw’   ‘~/tmp/scratch/RtmpXCGUNJ’ ‘~/tmp/scratch/RtmpXM01um’   ‘~/tmp/scratch/RtmpXlYehc’ ‘~/tmp/scratch/RtmpXqnTGC’   ‘~/tmp/scratch/RtmpZ7xBTD’ ‘~/tmp/scratch/RtmpZ8pIFb’   ‘~/tmp/scratch/RtmpZFAhZf’ ‘~/tmp/scratch/RtmpZc5i2X’   ‘~/tmp/scratch/RtmpatNfZQ’ ‘~/tmp/scratch/RtmpauT0sJ’   ‘~/tmp/scratch/Rtmpb5vHH4’ ‘~/tmp/scratch/Rtmpb7wvcf’   ‘~/tmp/scratch/RtmpbFRiOk’ ‘~/tmp/scratch/RtmpbOwBd3’   ‘~/tmp/scratch/Rtmpbw9Q8B’ ‘~/tmp/scratch/Rtmpc5kYmK’   ‘~/tmp/scratch/RtmpcHn5GY’ ‘~/tmp/scratch/Rtmpd6tjnN’   ‘~/tmp/scratch/RtmpdQFuIv’ ‘~/tmp/scratch/Rtmpdd0323’   ‘~/tmp/scratch/RtmpdeDESF’ ‘~/tmp/scratch/RtmpdxryKx’   ‘~/tmp/scratch/Rtmpekndzk’ ‘~/tmp/scratch/RtmpfT3Cbi’   ‘~/tmp/scratch/Rtmph5BdJX’ ‘~/tmp/scratch/RtmphX2JOP’   ‘~/tmp/scratch/RtmphedZ5D’ ‘~/tmp/scratch/Rtmphx39ga’   ‘~/tmp/scratch/RtmpiCkLVh’ ‘~/tmp/scratch/RtmpiHdX3n’   ‘~/tmp/scratch/RtmpiKFjUw’ ‘~/tmp/scratch/RtmpiNbCCR’   ‘~/tmp/scratch/RtmpiWF89j’ ‘~/tmp/scratch/Rtmpicmd9U’   ‘~/tmp/scratch/RtmpjLYT1N’ ‘~/tmp/scratch/Rtmpjba9NZ’   ‘~/tmp/scratch/RtmpkgXJK1’ ‘~/tmp/scratch/Rtmpkqd1EB’   ‘~/tmp/scratch/RtmpkuzwuW’ ‘~/tmp/scratch/RtmplCMfLK’   ‘~/tmp/scratch/RtmplL2Mnv’ ‘~/tmp/scratch/RtmplvTARV’   ‘~/tmp/scratch/RtmpmHeMxQ’ ‘~/tmp/scratch/RtmpmVYvUh’   ‘~/tmp/scratch/RtmpmX7IwJ’ ‘~/tmp/scratch/RtmpmoGc5w’   ‘~/tmp/scratch/Rtmpmrg0v9’ ‘~/tmp/scratch/RtmpodNlK4’   ‘~/tmp/scratch/RtmpohQZUe’ ‘~/tmp/scratch/Rtmpp7iPRa’   ‘~/tmp/scratch/RtmpqRxEP1’ ‘~/tmp/scratch/RtmpqXNGJe’   ‘~/tmp/scratch/RtmpqY6L8J’ ‘~/tmp/scratch/RtmpqjzQ6I’   ‘~/tmp/scratch/RtmprBQ2NJ’ ‘~/tmp/scratch/RtmprGfA2V’   ‘~/tmp/scratch/RtmprMIC93’ ‘~/tmp/scratch/RtmprZKJ8e’   ‘~/tmp/scratch/RtmprlYkWq’ ‘~/tmp/scratch/RtmprtqfDS’   ‘~/tmp/scratch/RtmpsBdoyl’ ‘~/tmp/scratch/RtmpsTNDNW’   ‘~/tmp/scratch/Rtmpsbqg1x’ ‘~/tmp/scratch/RtmpsfD1DY’   ‘~/tmp/scratch/Rtmpt9X0XT’ ‘~/tmp/scratch/RtmptJtpJU’   ‘~/tmp/scratch/RtmpuUrg4G’ ‘~/tmp/scratch/RtmpuoLfNj’   ‘~/tmp/scratch/Rtmpv0d3yA’ ‘~/tmp/scratch/Rtmpv1JrZO’   ‘~/tmp/scratch/Rtmpv2SLI6’ ‘~/tmp/scratch/Rtmpv5vwbq’   ‘~/tmp/scratch/RtmpvnscT1’ ‘~/tmp/scratch/RtmpwEi67V’   ‘~/tmp/scratch/RtmpwFCEE4’ ‘~/tmp/scratch/RtmpwLOZwj’   ‘~/tmp/scratch/RtmpwouVFd’ ‘~/tmp/scratch/Rtmpy1B6nJ’   ‘~/tmp/scratch/Rtmpy9gQBD’ ‘~/tmp/scratch/RtmpyIX5uh’   ‘~/tmp/scratch/RtmpyJxek4’ ‘~/tmp/scratch/RtmpyYWx13’   ‘~/tmp/scratch/RtmpyocThh’ ‘~/tmp/scratch/RtmpyxYFY3’   ‘~/tmp/scratch/RtmpzBKAVX’ ‘~/tmp/scratch/RtmpzNFgmJ’   ‘~/tmp/scratch/RtmpzhFH0T’ ‘~/tmp/scratch/RtmpzhQg5I’   ‘~/tmp/scratch/xvfb-run.04whIt’ ‘~/tmp/scratch/xvfb-run.0Cd4Is’   ‘~/tmp/scratch/xvfb-run.0NX4K3’ ‘~/tmp/scratch/xvfb-run.0U6kSF’   ‘~/tmp/scratch/xvfb-run.1a4qsj’ ‘~/tmp/scratch/xvfb-run.1e2nH4’   ‘~/tmp/scratch/xvfb-run.27j14M’ ‘~/tmp/scratch/xvfb-run.3SNJsi’   ‘~/tmp/scratch/xvfb-run.5RrWQf’ ‘~/tmp/scratch/xvfb-run.5bkGoM’   ‘~/tmp/scratch/xvfb-run.8uuNLO’ ‘~/tmp/scratch/xvfb-run.95Arik’   ‘~/tmp/scratch/xvfb-run.9DcHtO’ ‘~/tmp/scratch/xvfb-run.9maZpj’   ‘~/tmp/scratch/xvfb-run.AlS6bj’ ‘~/tmp/scratch/xvfb-run.BjPOVi’   ‘~/tmp/scratch/xvfb-run.BuTNMN’ ‘~/tmp/scratch/xvfb-run.CCrxCd’   ‘~/tmp/scratch/xvfb-run.CpNuYg’ ‘~/tmp/scratch/xvfb-run.F9hNFQ’   ‘~/tmp/scratch/xvfb-run.FyQjPz’ ‘~/tmp/scratch/xvfb-run.HIG4GD’   ‘~/tmp/scratch/xvfb-run.HTwbPN’ ‘~/tmp/scratch/xvfb-run.I7Lmqh’   ‘~/tmp/scratch/xvfb-run.IEIJrJ’ ‘~/tmp/scratch/xvfb-run.JL3aGg’   ‘~/tmp/scratch/xvfb-run.JfNDaS’ ‘~/tmp/scratch/xvfb-run.LHDoQe’   ‘~/tmp/scratch/xvfb-run.LcmXso’ ‘~/tmp/scratch/xvfb-run.M2G1Bh’   ‘~/tmp/scratch/xvfb-run.MfApje’ ‘~/tmp/scratch/xvfb-run.Ns9aBp’   ‘~/tmp/scratch/xvfb-run.OTLjG8’ ‘~/tmp/scratch/xvfb-run.OVeAWs’   ‘~/tmp/scratch/xvfb-run.QEy5iU’ ‘~/tmp/scratch/xvfb-run.QnLg1o’   ‘~/tmp/scratch/xvfb-run.RMGeQd’ ‘~/tmp/scratch/xvfb-run.RRQB7s’   ‘~/tmp/scratch/xvfb-run.Rlbgkn’ ‘~/tmp/scratch/xvfb-run.RtLLUQ’   ‘~/tmp/scratch/xvfb-run.SJuVyJ’ ‘~/tmp/scratch/xvfb-run.TJGnem’   ‘~/tmp/scratch/xvfb-run.U2YDrW’ ‘~/tmp/scratch/xvfb-run.UC14PF’   ‘~/tmp/scratch/xvfb-run.UhFAmf’ ‘~/tmp/scratch/xvfb-run.UkLvJw’   ‘~/tmp/scratch/xvfb-run.VSUNyq’ ‘~/tmp/scratch/xvfb-run.Xg3viS’   ‘~/tmp/scratch/xvfb-run.YUmHyb’ ‘~/tmp/scratch/xvfb-run.Z1SLFw’   ‘~/tmp/scratch/xvfb-run.ZBWhcl’ ‘~/tmp/scratch/xvfb-run.ZkdLBa’   ‘~/tmp/scratch/xvfb-run.aEKYfk’ ‘~/tmp/scratch/xvfb-run.aEMM4E’   ‘~/tmp/scratch/xvfb-run.aRURE1’ ‘~/tmp/scratch/xvfb-run.bz6Vz8’   ‘~/tmp/scratch/xvfb-run.cPHC99’ ‘~/tmp/scratch/xvfb-run.fWBSwA’   ‘~/tmp/scratch/xvfb-run.hbKvCK’ ‘~/tmp/scratch/xvfb-run.izq5MQ’   ‘~/tmp/scratch/xvfb-run.jPK6fs’ ‘~/tmp/scratch/xvfb-run.jlbdcE’   ‘~/tmp/scratch/xvfb-run.jwjf8M’ ‘~/tmp/scratch/xvfb-run.k5yoM5’   ‘~/tmp/scratch/xvfb-run.kDB8ci’ ‘~/tmp/scratch/xvfb-run.kZZjsK’   ‘~/tmp/scratch/xvfb-run.mMVPfE’ ‘~/tmp/scratch/xvfb-run.mPIltL’   ‘~/tmp/scratch/xvfb-run.mnQwVt’ ‘~/tmp/scratch/xvfb-run.mqIS1X’   ‘~/tmp/scratch/xvfb-run.oqCS1P’ ‘~/tmp/scratch/xvfb-run.rdtaHV’   ‘~/tmp/scratch/xvfb-run.rnhPck’ ‘~/tmp/scratch/xvfb-run.sTls39’   ‘~/tmp/scratch/xvfb-run.t6CfqZ’ ‘~/tmp/scratch/xvfb-run.uuBrQd’   ‘~/tmp/scratch/xvfb-run.wT3U3G’ ‘~/tmp/scratch/xvfb-run.wl37j5’   ‘~/tmp/scratch/xvfb-run.xlm91H’ ‘~/tmp/scratch/xvfb-run.zL2ZNu’   ‘~/tmp/scratch/xvfb-run.zbW74d’
• DONE

Status: 1 NOTE