• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 11:24:38 UTC
• checking for file ‘CoSMoS/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘CoSMoS’ version ‘2.2.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘CoSMoS’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/5s] OK
• checking whether the package can be unloaded cleanly ... [3s/5s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/5s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/5s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [21s/30s] OK
• checking Rd files ... [1s/2s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [22s/31s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [8s/8s] OK   Running ‘testthat.R’ [8s/7s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [88s/117s] OK
• checking PDF version of manual ... [6s/7s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp04j4qP’ ‘~/tmp/scratch/Rtmp0H6uAG’   ‘~/tmp/scratch/Rtmp0NVNrX’ ‘~/tmp/scratch/Rtmp0aLIJh’   ‘~/tmp/scratch/Rtmp0gJNpr’ ‘~/tmp/scratch/Rtmp0lif8A’   ‘~/tmp/scratch/Rtmp1Bmn2p’ ‘~/tmp/scratch/Rtmp1l1xGz’   ‘~/tmp/scratch/Rtmp1vSGiu’ ‘~/tmp/scratch/Rtmp2TCLJ0’   ‘~/tmp/scratch/Rtmp2ncVGQ’ ‘~/tmp/scratch/Rtmp2nx0S0’   ‘~/tmp/scratch/Rtmp2zosz1’ ‘~/tmp/scratch/Rtmp3cZtj0’   ‘~/tmp/scratch/Rtmp4NoR7p’ ‘~/tmp/scratch/Rtmp4orkcK’   ‘~/tmp/scratch/Rtmp4r32hp’ ‘~/tmp/scratch/Rtmp5Znynr’   ‘~/tmp/scratch/Rtmp5sT182’ ‘~/tmp/scratch/Rtmp5yMmwS’   ‘~/tmp/scratch/Rtmp639R8k’ ‘~/tmp/scratch/Rtmp6BWmjP’   ‘~/tmp/scratch/Rtmp6NFvXh’ ‘~/tmp/scratch/Rtmp6P3GID’   ‘~/tmp/scratch/Rtmp6Y6jNv’ ‘~/tmp/scratch/Rtmp6mvRUj’   ‘~/tmp/scratch/Rtmp6rCPQC’ ‘~/tmp/scratch/Rtmp7913ii’   ‘~/tmp/scratch/Rtmp7WNRLU’ ‘~/tmp/scratch/Rtmp7aF0nK’   ‘~/tmp/scratch/Rtmp7oTmWe’ ‘~/tmp/scratch/Rtmp8HgqH7’   ‘~/tmp/scratch/Rtmp8xyBFi’ ‘~/tmp/scratch/Rtmp9AtPWp’   ‘~/tmp/scratch/RtmpA00WUj’ ‘~/tmp/scratch/RtmpA3D6ra’   ‘~/tmp/scratch/RtmpA5K4Hz’ ‘~/tmp/scratch/RtmpAHA4qx’   ‘~/tmp/scratch/RtmpBCAMuT’ ‘~/tmp/scratch/RtmpBMPkJo’   ‘~/tmp/scratch/RtmpBfgPkZ’ ‘~/tmp/scratch/RtmpCL9KIW’   ‘~/tmp/scratch/RtmpCv1hUm’ ‘~/tmp/scratch/RtmpDPa0ge’   ‘~/tmp/scratch/RtmpDpcE36’ ‘~/tmp/scratch/RtmpF8tuD1’   ‘~/tmp/scratch/RtmpFBZcxO’ ‘~/tmp/scratch/RtmpFJLxp5’   ‘~/tmp/scratch/RtmpFUE9n7’ ‘~/tmp/scratch/RtmpFaxxBC’   ‘~/tmp/scratch/RtmpGCSOtZ’ ‘~/tmp/scratch/RtmpGuguNp’   ‘~/tmp/scratch/RtmpHDhhOT’ ‘~/tmp/scratch/RtmpHJYU2m’   ‘~/tmp/scratch/RtmpHXHAZS’ ‘~/tmp/scratch/RtmpHcMtcH’   ‘~/tmp/scratch/RtmpI6cGs7’ ‘~/tmp/scratch/RtmpIjVFiE’   ‘~/tmp/scratch/RtmpIzRZoM’ ‘~/tmp/scratch/RtmpJ4A83e’   ‘~/tmp/scratch/RtmpJFcKrd’ ‘~/tmp/scratch/RtmpJKYdIm’   ‘~/tmp/scratch/RtmpJoXGf7’ ‘~/tmp/scratch/RtmpJppNfi’   ‘~/tmp/scratch/RtmpJuiWf8’ ‘~/tmp/scratch/RtmpL35wn4’   ‘~/tmp/scratch/RtmpLi45IS’ ‘~/tmp/scratch/RtmpN7bgIr’   ‘~/tmp/scratch/RtmpNvQzLG’ ‘~/tmp/scratch/RtmpOh0pJu’   ‘~/tmp/scratch/RtmpPVfKR9’ ‘~/tmp/scratch/RtmpPfeWJu’   ‘~/tmp/scratch/RtmpPlTMrL’ ‘~/tmp/scratch/RtmpPtwBrN’   ‘~/tmp/scratch/RtmpQ03fAC’ ‘~/tmp/scratch/RtmpQUWAmE’   ‘~/tmp/scratch/RtmpR0cRVj’ ‘~/tmp/scratch/RtmpRA2unp’   ‘~/tmp/scratch/RtmpRA5yVC’ ‘~/tmp/scratch/RtmpRWqBV9’   ‘~/tmp/scratch/RtmpReoBCQ’ ‘~/tmp/scratch/RtmpRh6Jzs’   ‘~/tmp/scratch/RtmpRms6IM’ ‘~/tmp/scratch/RtmpSDxlZX’   ‘~/tmp/scratch/RtmpSnRD3g’ ‘~/tmp/scratch/RtmpSqtFMp’   ‘~/tmp/scratch/RtmpStlMt2’ ‘~/tmp/scratch/RtmpSwCFiK’   ‘~/tmp/scratch/RtmpSxxVbs’ ‘~/tmp/scratch/RtmpTD0pzE’   ‘~/tmp/scratch/RtmpTOyFke’ ‘~/tmp/scratch/RtmpUXxSF4’   ‘~/tmp/scratch/RtmpVXAFhO’ ‘~/tmp/scratch/RtmpVcNgcH’   ‘~/tmp/scratch/RtmpViBfb6’ ‘~/tmp/scratch/RtmpVuSACE’   ‘~/tmp/scratch/RtmpWuBJk6’ ‘~/tmp/scratch/RtmpXq1VUc’   ‘~/tmp/scratch/RtmpYHnpNj’ ‘~/tmp/scratch/RtmpYdIW6w’   ‘~/tmp/scratch/RtmpYrmwfo’ ‘~/tmp/scratch/RtmpZ3u8e7’   ‘~/tmp/scratch/RtmpZCRiwo’ ‘~/tmp/scratch/RtmpZklggh’   ‘~/tmp/scratch/RtmpaGeL7o’ ‘~/tmp/scratch/RtmpajmNNi’   ‘~/tmp/scratch/RtmpasAsUm’ ‘~/tmp/scratch/RtmpbS44Ar’   ‘~/tmp/scratch/RtmpbfBVBh’ ‘~/tmp/scratch/RtmpbldN7q’   ‘~/tmp/scratch/RtmpcqQYCB’ ‘~/tmp/scratch/Rtmpd2yEuP’   ‘~/tmp/scratch/RtmpdOdoAT’ ‘~/tmp/scratch/RtmpdOiCJ3’   ‘~/tmp/scratch/Rtmpdb0Nwn’ ‘~/tmp/scratch/Rtmpddutrt’   ‘~/tmp/scratch/RtmpdgzyJh’ ‘~/tmp/scratch/Rtmpe0kq4x’   ‘~/tmp/scratch/Rtmpe5C8mT’ ‘~/tmp/scratch/RtmpfFD71u’   ‘~/tmp/scratch/RtmpfWH3LI’ ‘~/tmp/scratch/Rtmpguvtaa’   ‘~/tmp/scratch/RtmphEdfDl’ ‘~/tmp/scratch/RtmphNMpdI’   ‘~/tmp/scratch/Rtmphjw3Ib’ ‘~/tmp/scratch/RtmphrDGzQ’   ‘~/tmp/scratch/RtmpiWWYnF’ ‘~/tmp/scratch/Rtmpkmh9AR’   ‘~/tmp/scratch/Rtmpl5vmrk’ ‘~/tmp/scratch/Rtmpl9ZZIS’   ‘~/tmp/scratch/Rtmpm5fwtX’ ‘~/tmp/scratch/Rtmpn9q67g’   ‘~/tmp/scratch/RtmpnuzzIl’ ‘~/tmp/scratch/Rtmpny6cRe’   ‘~/tmp/scratch/RtmpnzhGTC’ ‘~/tmp/scratch/Rtmpo4v6iV’   ‘~/tmp/scratch/RtmpoSGNSa’ ‘~/tmp/scratch/Rtmpov0Hkl’   ‘~/tmp/scratch/Rtmpove5Sa’ ‘~/tmp/scratch/Rtmpp1KSwu’   ‘~/tmp/scratch/Rtmpp2RZle’ ‘~/tmp/scratch/RtmppK9pWM’   ‘~/tmp/scratch/RtmppzluCd’ ‘~/tmp/scratch/Rtmpq2IqsC’   ‘~/tmp/scratch/RtmpqWJMJG’ ‘~/tmp/scratch/RtmprO180r’   ‘~/tmp/scratch/RtmprUmDyF’ ‘~/tmp/scratch/RtmprmYcPU’   ‘~/tmp/scratch/RtmpruUJt9’ ‘~/tmp/scratch/RtmpsLh5xz’   ‘~/tmp/scratch/RtmpsWviwS’ ‘~/tmp/scratch/Rtmpsdz2T6’   ‘~/tmp/scratch/RtmpsuVoAF’ ‘~/tmp/scratch/Rtmpt88EHP’   ‘~/tmp/scratch/RtmptMktwh’ ‘~/tmp/scratch/RtmpuUVhJM’   ‘~/tmp/scratch/RtmpudCL3h’ ‘~/tmp/scratch/RtmpvJfan9’   ‘~/tmp/scratch/RtmpvqmMxy’ ‘~/tmp/scratch/Rtmpvwk8OB’   ‘~/tmp/scratch/RtmpwB7Oqe’ ‘~/tmp/scratch/RtmpweBYgr’   ‘~/tmp/scratch/Rtmpx42qEc’ ‘~/tmp/scratch/Rtmpx4ojwn’   ‘~/tmp/scratch/Rtmpxfj25K’ ‘~/tmp/scratch/Rtmpy7O0tP’   ‘~/tmp/scratch/Rtmpym468F’ ‘~/tmp/scratch/Rtmpyzbstm’   ‘~/tmp/scratch/Rtmpz3my8w’ ‘~/tmp/scratch/Rtmpz4M187’   ‘~/tmp/scratch/xvfb-run.0CkQeq’ ‘~/tmp/scratch/xvfb-run.0UnNFC’   ‘~/tmp/scratch/xvfb-run.28jIun’ ‘~/tmp/scratch/xvfb-run.2EYxTF’   ‘~/tmp/scratch/xvfb-run.5Pb4Yz’ ‘~/tmp/scratch/xvfb-run.5TMTZH’   ‘~/tmp/scratch/xvfb-run.6jbLyD’ ‘~/tmp/scratch/xvfb-run.8NBF07’   ‘~/tmp/scratch/xvfb-run.8ttSS3’ ‘~/tmp/scratch/xvfb-run.9BHCzt’   ‘~/tmp/scratch/xvfb-run.9Kl40g’ ‘~/tmp/scratch/xvfb-run.9wskvF’   ‘~/tmp/scratch/xvfb-run.AFOcgp’ ‘~/tmp/scratch/xvfb-run.AU6bqf’   ‘~/tmp/scratch/xvfb-run.DDRDCr’ ‘~/tmp/scratch/xvfb-run.E74TGa’   ‘~/tmp/scratch/xvfb-run.FADddC’ ‘~/tmp/scratch/xvfb-run.FDDmf3’   ‘~/tmp/scratch/xvfb-run.Ffb9gg’ ‘~/tmp/scratch/xvfb-run.G4bm5e’   ‘~/tmp/scratch/xvfb-run.GBIFPR’ ‘~/tmp/scratch/xvfb-run.HCkWoH’   ‘~/tmp/scratch/xvfb-run.IGMlXn’ ‘~/tmp/scratch/xvfb-run.JAkTeC’   ‘~/tmp/scratch/xvfb-run.JV3BWh’ ‘~/tmp/scratch/xvfb-run.JoGPat’   ‘~/tmp/scratch/xvfb-run.KvHHaB’ ‘~/tmp/scratch/xvfb-run.NNsrUJ’   ‘~/tmp/scratch/xvfb-run.NaeBxr’ ‘~/tmp/scratch/xvfb-run.PnozZP’   ‘~/tmp/scratch/xvfb-run.Q0XXZg’ ‘~/tmp/scratch/xvfb-run.Q161lP’   ‘~/tmp/scratch/xvfb-run.QUQaEb’ ‘~/tmp/scratch/xvfb-run.Riczdh’   ‘~/tmp/scratch/xvfb-run.RtVDl7’ ‘~/tmp/scratch/xvfb-run.SlMgD0’   ‘~/tmp/scratch/xvfb-run.TZcR3t’ ‘~/tmp/scratch/xvfb-run.TwDeBH’   ‘~/tmp/scratch/xvfb-run.Vnxthw’ ‘~/tmp/scratch/xvfb-run.W9cJjc’   ‘~/tmp/scratch/xvfb-run.WY0s3v’ ‘~/tmp/scratch/xvfb-run.YYnWuf’   ‘~/tmp/scratch/xvfb-run.YfwdzC’ ‘~/tmp/scratch/xvfb-run.Z0YVea’   ‘~/tmp/scratch/xvfb-run.cCKv4X’ ‘~/tmp/scratch/xvfb-run.dEvVCe’   ‘~/tmp/scratch/xvfb-run.e05CN6’ ‘~/tmp/scratch/xvfb-run.e0YEbt’   ‘~/tmp/scratch/xvfb-run.eVGnf4’ ‘~/tmp/scratch/xvfb-run.eYrqsJ’   ‘~/tmp/scratch/xvfb-run.eyYOZF’ ‘~/tmp/scratch/xvfb-run.fDiHkt’   ‘~/tmp/scratch/xvfb-run.iG83Ye’ ‘~/tmp/scratch/xvfb-run.kHXmKK’   ‘~/tmp/scratch/xvfb-run.lM0edD’ ‘~/tmp/scratch/xvfb-run.lwZXM0’   ‘~/tmp/scratch/xvfb-run.mEf0Kj’ ‘~/tmp/scratch/xvfb-run.n9a0hk’   ‘~/tmp/scratch/xvfb-run.nDUy6l’ ‘~/tmp/scratch/xvfb-run.nf1ZFE’   ‘~/tmp/scratch/xvfb-run.odavRM’ ‘~/tmp/scratch/xvfb-run.pNITiX’   ‘~/tmp/scratch/xvfb-run.r1cQ4N’ ‘~/tmp/scratch/xvfb-run.r8dRlU’   ‘~/tmp/scratch/xvfb-run.sw4yUo’ ‘~/tmp/scratch/xvfb-run.tbTURG’   ‘~/tmp/scratch/xvfb-run.u4WvXu’ ‘~/tmp/scratch/xvfb-run.uqX5Nh’   ‘~/tmp/scratch/xvfb-run.v3Qjlg’ ‘~/tmp/scratch/xvfb-run.wYBj9A’   ‘~/tmp/scratch/xvfb-run.xA071U’ ‘~/tmp/scratch/xvfb-run.xX4xsM’   ‘~/tmp/scratch/xvfb-run.y9Hdtt’ ‘~/tmp/scratch/xvfb-run.yMrYbJ’   ‘~/tmp/scratch/xvfb-run.ybo1w6’ ‘~/tmp/scratch/xvfb-run.yrRrpY’   ‘~/tmp/scratch/xvfb-run.yztBYw’ ‘~/tmp/scratch/xvfb-run.z4OYqD’   ‘~/tmp/scratch/xvfb-run.zQKwGk’ ‘~/tmp/scratch/xvfb-run.zlTPAP’
• DONE

Status: 1 NOTE