- using R Under development (unstable) (2025-10-20 r88955)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-15 (Debian 15.2.0-4) 15.2.0
GNU Fortran (Debian 15.2.0-4) 15.2.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘ClustAssess/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘ClustAssess’ version ‘1.1.0’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... INFO
Package suggested but not available for checking: ‘monocle3’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘ClustAssess’ can be installed ... OK
See the install log for details.
- used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [28s/34s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... [92s/127s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot_n_neigh_ecs 10.117 0.573 14.644
plot_n_neigh_k_correspondence 9.863 0.503 12.605
plot_feature_per_resolution_stability_incremental 9.187 0.088 15.086
assess_nn_stability 8.713 0.168 11.191
plot_feature_overall_stability_incremental 8.705 0.006 10.447
plot_feature_stability_mb_facet 5.541 0.119 8.509
plot_feature_stability_ecs_facet 5.372 0.027 8.411
assess_feature_stability 4.585 0.227 6.189
plot_feature_per_resolution_stability_boxplot 4.665 0.091 7.140
plot_feature_overall_stability_boxplot 4.684 0.008 6.452
assess_clustering_stability 4.225 0.270 5.776
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [27s/35s] OK
Running ‘testthat.R’ [27s/35s]
- checking PDF version of manual ... [6s/8s] OK
- checking HTML version of manual ... [2s/4s] NOTE
Found the following HTML validation problems:
write_shiny_app.html:148:1 (write_shiny_app.Rd:83): Warning: missing </ul> before </div>
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE