• using R Under development (unstable) (2025-10-20 r88955)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-4) 15.2.0     GNU Fortran (Debian 15.2.0-4) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘ClustAssess/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ClustAssess’ version ‘1.1.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘monocle3’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ClustAssess’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [28s/34s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [92s/127s] OK Examples with CPU (user + system) or elapsed time > 5s                                                     user system elapsed plot_n_neigh_ecs 10.117 0.573 14.644 plot_n_neigh_k_correspondence 9.863 0.503 12.605 plot_feature_per_resolution_stability_incremental 9.187 0.088 15.086 assess_nn_stability 8.713 0.168 11.191 plot_feature_overall_stability_incremental 8.705 0.006 10.447 plot_feature_stability_mb_facet 5.541 0.119 8.509 plot_feature_stability_ecs_facet 5.372 0.027 8.411 assess_feature_stability 4.585 0.227 6.189 plot_feature_per_resolution_stability_boxplot 4.665 0.091 7.140 plot_feature_overall_stability_boxplot 4.684 0.008 6.452 assess_clustering_stability 4.225 0.270 5.776
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [27s/35s] OK   Running ‘testthat.R’ [27s/35s]
• checking PDF version of manual ... [6s/8s] OK
• checking HTML version of manual ... [2s/4s] NOTE Found the following HTML validation problems: write_shiny_app.html:148:1 (write_shiny_app.Rd:83): Warning: missing </ul> before </div>
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE