• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 11:24:00 UTC
• checking for file ‘ClinicalUtilityRecal/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ClinicalUtilityRecal’ version ‘0.1.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Anu Mishra <anmishra@uw.edu>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: person(given = "Anu",                     family = "Mishra",                     role = c("aut", "cre"),                     email = "anmishra@uw.edu") as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘ClinicalUtilityRecal’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the package can be unloaded cleanly ... [3s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [16s/21s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) RAWgrid.Rd:58: Lost braces     58 | {Event rate outside RAW interval, widen RAW interval}{If no or too cases are inside RAW interval [R_{l},R_{u}], cross-validation procedure may not be stable, so this warning indicates RAW interval should widen to include more cases.}        | ^ checkRd: (-1) RAWgrid.Rd:58: Lost braces; missing escapes or markup?     58 | {Event rate outside RAW interval, widen RAW interval}{If no or too cases are inside RAW interval [R_{l},R_{u}], cross-validation procedure may not be stable, so this warning indicates RAW interval should widen to include more cases.}        | ^ checkRd: (-1) RAWgrid.Rd:58: Lost braces; missing escapes or markup?     58 | {Event rate outside RAW interval, widen RAW interval}{If no or too cases are inside RAW interval [R_{l},R_{u}], cross-validation procedure may not be stable, so this warning indicates RAW interval should widen to include more cases.}        | ^ checkRd: (-1) cvReptWtTuning.Rd:33: Lost braces; missing escapes or markup?     33 | Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}        | ^ checkRd: (-1) cvReptWtTuning.Rd:33: Lost braces; missing escapes or markup?     33 | Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}        | ^ checkRd: (-1) cvReptWtTuning.Rd:33: Lost braces; missing escapes or markup?     33 | Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}        | ^ checkRd: (-1) cvReptWtTuning.Rd:33: Lost braces; missing escapes or markup?     33 | Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}        | ^ checkRd: (-1) cvWtTuning.Rd:28: Lost braces; missing escapes or markup?     28 | Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}        | ^ checkRd: (-1) cvWtTuning.Rd:28: Lost braces; missing escapes or markup?     28 | Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}        | ^ checkRd: (-1) cvWtTuning.Rd:28: Lost braces; missing escapes or markup?     28 | Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}        | ^ checkRd: (-1) cvWtTuning.Rd:28: Lost braces; missing escapes or markup?     28 | Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [7s/8s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0UeD67’ ‘~/tmp/scratch/Rtmp0j0Ubo’   ‘~/tmp/scratch/Rtmp0lif8A’ ‘~/tmp/scratch/Rtmp15lAEd’   ‘~/tmp/scratch/Rtmp1Rnaj4’ ‘~/tmp/scratch/Rtmp21gpYq’   ‘~/tmp/scratch/Rtmp2xbsSl’ ‘~/tmp/scratch/Rtmp44NWoZ’   ‘~/tmp/scratch/Rtmp4Ww07g’ ‘~/tmp/scratch/Rtmp4yg3f7’   ‘~/tmp/scratch/Rtmp5byEws’ ‘~/tmp/scratch/Rtmp5ccYpA’   ‘~/tmp/scratch/Rtmp5iQQU3’ ‘~/tmp/scratch/Rtmp6A1T7o’   ‘~/tmp/scratch/Rtmp6aPOwL’ ‘~/tmp/scratch/Rtmp6p61la’   ‘~/tmp/scratch/Rtmp7ZFQEp’ ‘~/tmp/scratch/Rtmp7amsSl’   ‘~/tmp/scratch/Rtmp8i2Hxk’ ‘~/tmp/scratch/Rtmp8qFrQU’   ‘~/tmp/scratch/Rtmp8rGMmY’ ‘~/tmp/scratch/Rtmp9uQtQO’   ‘~/tmp/scratch/RtmpA9D3FK’ ‘~/tmp/scratch/RtmpAwHZC3’   ‘~/tmp/scratch/RtmpBNgQip’ ‘~/tmp/scratch/RtmpC0XASa’   ‘~/tmp/scratch/RtmpCGDre0’ ‘~/tmp/scratch/RtmpCHdQZf’   ‘~/tmp/scratch/RtmpCn9gRi’ ‘~/tmp/scratch/RtmpCv1hUm’   ‘~/tmp/scratch/RtmpD3La7D’ ‘~/tmp/scratch/RtmpD6xH6u’   ‘~/tmp/scratch/RtmpDD32CT’ ‘~/tmp/scratch/RtmpDTD4zO’   ‘~/tmp/scratch/RtmpEHfwtQ’ ‘~/tmp/scratch/RtmpEoGOVz’   ‘~/tmp/scratch/RtmpF5oaHJ’ ‘~/tmp/scratch/RtmpFWw9I8’   ‘~/tmp/scratch/RtmpGZkG7g’ ‘~/tmp/scratch/RtmpGmePqP’   ‘~/tmp/scratch/RtmpGpudqL’ ‘~/tmp/scratch/RtmpHCjsrj’   ‘~/tmp/scratch/RtmpHcMtcH’ ‘~/tmp/scratch/RtmpHigGkj’   ‘~/tmp/scratch/RtmpHoXYLS’ ‘~/tmp/scratch/RtmpI2GL08’   ‘~/tmp/scratch/RtmpI7eGdq’ ‘~/tmp/scratch/RtmpIR1jjv’   ‘~/tmp/scratch/RtmpIzRZoM’ ‘~/tmp/scratch/RtmpJXpwvj’   ‘~/tmp/scratch/RtmpKBqbWr’ ‘~/tmp/scratch/RtmpKStscf’   ‘~/tmp/scratch/RtmpLC3agw’ ‘~/tmp/scratch/RtmpLi45IS’   ‘~/tmp/scratch/RtmpMMzzZF’ ‘~/tmp/scratch/RtmpMUUJlQ’   ‘~/tmp/scratch/RtmpMVF8he’ ‘~/tmp/scratch/RtmpN7bgIr’   ‘~/tmp/scratch/RtmpNRGuA1’ ‘~/tmp/scratch/RtmpNY6qLG’   ‘~/tmp/scratch/RtmpNhnFEn’ ‘~/tmp/scratch/RtmpO0FdWE’   ‘~/tmp/scratch/RtmpOLsBfw’ ‘~/tmp/scratch/RtmpOeZcjj’   ‘~/tmp/scratch/RtmpPPstDn’ ‘~/tmp/scratch/RtmpPVfKR9’   ‘~/tmp/scratch/RtmpPdU47q’ ‘~/tmp/scratch/RtmpQ09Bgw’   ‘~/tmp/scratch/RtmpQGMmqq’ ‘~/tmp/scratch/RtmpQhTDnE’   ‘~/tmp/scratch/RtmpQlZE54’ ‘~/tmp/scratch/RtmpRNTskl’   ‘~/tmp/scratch/RtmpS6Iajc’ ‘~/tmp/scratch/RtmpSWC3x1’   ‘~/tmp/scratch/RtmpSnRD3g’ ‘~/tmp/scratch/RtmpSpU7iR’   ‘~/tmp/scratch/RtmpT30PKQ’ ‘~/tmp/scratch/RtmpTLCaGr’   ‘~/tmp/scratch/RtmpTVKCoL’ ‘~/tmp/scratch/RtmpTbngq5’   ‘~/tmp/scratch/RtmpTk7MCx’ ‘~/tmp/scratch/RtmpTzXVob’   ‘~/tmp/scratch/RtmpURnAJM’ ‘~/tmp/scratch/RtmpUYjayj’   ‘~/tmp/scratch/RtmpW9P8Lr’ ‘~/tmp/scratch/RtmpWownR7’   ‘~/tmp/scratch/RtmpX9xWQi’ ‘~/tmp/scratch/RtmpXH4JpD’   ‘~/tmp/scratch/RtmpXiUUB4’ ‘~/tmp/scratch/RtmpXw1PJR’   ‘~/tmp/scratch/RtmpYpMJIE’ ‘~/tmp/scratch/RtmpZilj5T’   ‘~/tmp/scratch/RtmpbFUXxP’ ‘~/tmp/scratch/Rtmpbf30cm’   ‘~/tmp/scratch/Rtmpbk4xpx’ ‘~/tmp/scratch/RtmpbldN7q’   ‘~/tmp/scratch/Rtmpbuv6kP’ ‘~/tmp/scratch/RtmpcKLxRo’   ‘~/tmp/scratch/RtmpdKFSJA’ ‘~/tmp/scratch/RtmpdOKfm3’   ‘~/tmp/scratch/RtmpdOdoAT’ ‘~/tmp/scratch/RtmpdWJ8CZ’   ‘~/tmp/scratch/RtmpeQoBFj’ ‘~/tmp/scratch/RtmpfiN3XX’   ‘~/tmp/scratch/RtmpfltRX9’ ‘~/tmp/scratch/RtmpfxR4xM’   ‘~/tmp/scratch/RtmpgHH275’ ‘~/tmp/scratch/RtmpgddZAb’   ‘~/tmp/scratch/RtmpgzFJQs’ ‘~/tmp/scratch/RtmphZewIt’   ‘~/tmp/scratch/Rtmphb8jEN’ ‘~/tmp/scratch/RtmphkLYgU’   ‘~/tmp/scratch/RtmphyOhF6’ ‘~/tmp/scratch/RtmpioQTgz’   ‘~/tmp/scratch/RtmpjV4OvS’ ‘~/tmp/scratch/RtmpjiZpbD’   ‘~/tmp/scratch/RtmpkAFQgt’ ‘~/tmp/scratch/RtmpkhucNx’   ‘~/tmp/scratch/RtmpkrIWSt’ ‘~/tmp/scratch/RtmpmEXKzg’   ‘~/tmp/scratch/RtmpmdodJM’ ‘~/tmp/scratch/RtmpmfIjdX’   ‘~/tmp/scratch/RtmpnZSVql’ ‘~/tmp/scratch/RtmpnoeA4E’   ‘~/tmp/scratch/RtmpoxrKg5’ ‘~/tmp/scratch/Rtmpp6e6L7’   ‘~/tmp/scratch/RtmppMlzYN’ ‘~/tmp/scratch/RtmppfLIcd’   ‘~/tmp/scratch/RtmppnydCO’ ‘~/tmp/scratch/Rtmpps9m7D’   ‘~/tmp/scratch/RtmpqZ6TMG’ ‘~/tmp/scratch/Rtmpr42zV5’   ‘~/tmp/scratch/Rtmpr7Guc4’ ‘~/tmp/scratch/RtmprEE40T’   ‘~/tmp/scratch/RtmpsLh5xz’ ‘~/tmp/scratch/Rtmpsb1bpy’   ‘~/tmp/scratch/RtmpstdE3K’ ‘~/tmp/scratch/RtmpsuVoAF’   ‘~/tmp/scratch/RtmptSI11F’ ‘~/tmp/scratch/RtmptfT0Xa’   ‘~/tmp/scratch/RtmptkfVeH’ ‘~/tmp/scratch/Rtmpu1PSj2’   ‘~/tmp/scratch/Rtmpv67aUM’ ‘~/tmp/scratch/RtmpvYAT3m’   ‘~/tmp/scratch/RtmpvYomK2’ ‘~/tmp/scratch/Rtmpvea154’   ‘~/tmp/scratch/Rtmpvqw41i’ ‘~/tmp/scratch/RtmpwJTJhm’   ‘~/tmp/scratch/Rtmpx4ojwn’ ‘~/tmp/scratch/RtmpxHQJ1J’   ‘~/tmp/scratch/RtmpxYo2Qv’ ‘~/tmp/scratch/RtmpxevQC7’   ‘~/tmp/scratch/RtmpyT7ltw’ ‘~/tmp/scratch/RtmpyezWgi’   ‘~/tmp/scratch/Rtmpyv1oVv’ ‘~/tmp/scratch/xvfb-run.1PitxV’   ‘~/tmp/scratch/xvfb-run.1jm9tE’ ‘~/tmp/scratch/xvfb-run.28jIun’   ‘~/tmp/scratch/xvfb-run.2B4OYC’ ‘~/tmp/scratch/xvfb-run.2BxMy7’   ‘~/tmp/scratch/xvfb-run.2ssGYn’ ‘~/tmp/scratch/xvfb-run.2uDkpC’   ‘~/tmp/scratch/xvfb-run.35m7yL’ ‘~/tmp/scratch/xvfb-run.538I2w’   ‘~/tmp/scratch/xvfb-run.76g2KF’ ‘~/tmp/scratch/xvfb-run.7ijOWn’   ‘~/tmp/scratch/xvfb-run.8NBF07’ ‘~/tmp/scratch/xvfb-run.8YHvPu’   ‘~/tmp/scratch/xvfb-run.9lP6ac’ ‘~/tmp/scratch/xvfb-run.BF129G’   ‘~/tmp/scratch/xvfb-run.BZL6SV’ ‘~/tmp/scratch/xvfb-run.BeK0QH’   ‘~/tmp/scratch/xvfb-run.C1yhwH’ ‘~/tmp/scratch/xvfb-run.FNuXzZ’   ‘~/tmp/scratch/xvfb-run.Gj0P4P’ ‘~/tmp/scratch/xvfb-run.Gy9si8’   ‘~/tmp/scratch/xvfb-run.I8Xnk0’ ‘~/tmp/scratch/xvfb-run.IoBpFb’   ‘~/tmp/scratch/xvfb-run.JoGPat’ ‘~/tmp/scratch/xvfb-run.JosnXs’   ‘~/tmp/scratch/xvfb-run.KZus7w’ ‘~/tmp/scratch/xvfb-run.LjbIjC’   ‘~/tmp/scratch/xvfb-run.Nit8QH’ ‘~/tmp/scratch/xvfb-run.OUPsUm’   ‘~/tmp/scratch/xvfb-run.PuMda3’ ‘~/tmp/scratch/xvfb-run.Q161lP’   ‘~/tmp/scratch/xvfb-run.RCIFF2’ ‘~/tmp/scratch/xvfb-run.RSnmDr’   ‘~/tmp/scratch/xvfb-run.SMJBXe’ ‘~/tmp/scratch/xvfb-run.SmfnXV’   ‘~/tmp/scratch/xvfb-run.TG2y9t’ ‘~/tmp/scratch/xvfb-run.aOEgFp’   ‘~/tmp/scratch/xvfb-run.bTK6FW’ ‘~/tmp/scratch/xvfb-run.e05CN6’   ‘~/tmp/scratch/xvfb-run.eYrqsJ’ ‘~/tmp/scratch/xvfb-run.eptVrr’   ‘~/tmp/scratch/xvfb-run.gSOIEN’ ‘~/tmp/scratch/xvfb-run.gU7W5c’   ‘~/tmp/scratch/xvfb-run.ghSmWk’ ‘~/tmp/scratch/xvfb-run.gnIAbQ’   ‘~/tmp/scratch/xvfb-run.hlxw8o’ ‘~/tmp/scratch/xvfb-run.iEkXUq’   ‘~/tmp/scratch/xvfb-run.jDZCv9’ ‘~/tmp/scratch/xvfb-run.jbjNbv’   ‘~/tmp/scratch/xvfb-run.kcNorO’ ‘~/tmp/scratch/xvfb-run.lM0edD’   ‘~/tmp/scratch/xvfb-run.mXNMyf’ ‘~/tmp/scratch/xvfb-run.nua73M’   ‘~/tmp/scratch/xvfb-run.ocdiJD’ ‘~/tmp/scratch/xvfb-run.ofGl5V’   ‘~/tmp/scratch/xvfb-run.tbTURG’ ‘~/tmp/scratch/xvfb-run.uX2rw2’   ‘~/tmp/scratch/xvfb-run.v1U5Z3’ ‘~/tmp/scratch/xvfb-run.v4iY1S’   ‘~/tmp/scratch/xvfb-run.w0Lc0t’ ‘~/tmp/scratch/xvfb-run.wYzAtP’   ‘~/tmp/scratch/xvfb-run.xA071U’ ‘~/tmp/scratch/xvfb-run.znlaJs’
• DONE

Status: 3 NOTEs