• using R Under development (unstable) (2026-08-02 r90338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-03 11:16:06 UTC
• checking for file ‘BiocManager/DESCRIPTION’ ... OK
• this is package ‘BiocManager’ version ‘1.30.27’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘BiocManager’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking whether startup messages can be suppressed ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/6s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [0s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [3s/63s] OK   Running ‘testthat.R’ [3s/63s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp00KFYm’ ‘~/tmp/scratch/Rtmp03FZLh’   ‘~/tmp/scratch/Rtmp04rdh6’ ‘~/tmp/scratch/Rtmp0SgILW’   ‘~/tmp/scratch/Rtmp0q1v1Q’ ‘~/tmp/scratch/Rtmp0zmG5y’   ‘~/tmp/scratch/Rtmp1ee5et’ ‘~/tmp/scratch/Rtmp1hpfxv’   ‘~/tmp/scratch/Rtmp1pZH6p’ ‘~/tmp/scratch/Rtmp23vvTR’   ‘~/tmp/scratch/Rtmp36FNWi’ ‘~/tmp/scratch/Rtmp3DKopT’   ‘~/tmp/scratch/Rtmp3NJE2K’ ‘~/tmp/scratch/Rtmp4BzEus’   ‘~/tmp/scratch/Rtmp5EA3Jb’ ‘~/tmp/scratch/Rtmp5Hm0xp’   ‘~/tmp/scratch/Rtmp6Qk2vN’ ‘~/tmp/scratch/Rtmp6aIdDB’   ‘~/tmp/scratch/Rtmp703NQb’ ‘~/tmp/scratch/Rtmp7EkKlT’   ‘~/tmp/scratch/Rtmp82ElQE’ ‘~/tmp/scratch/Rtmp8ws5o0’   ‘~/tmp/scratch/Rtmp9JQfsj’ ‘~/tmp/scratch/RtmpAWScQ1’   ‘~/tmp/scratch/RtmpAZEhqD’ ‘~/tmp/scratch/RtmpAcVMiW’   ‘~/tmp/scratch/RtmpAuvx1B’ ‘~/tmp/scratch/RtmpBTVyI7’   ‘~/tmp/scratch/RtmpBsn94A’ ‘~/tmp/scratch/RtmpETLoja’   ‘~/tmp/scratch/RtmpGXnEqC’ ‘~/tmp/scratch/RtmpIsVq3i’   ‘~/tmp/scratch/RtmpJ4oPpm’ ‘~/tmp/scratch/RtmpKBVg0n’   ‘~/tmp/scratch/RtmpKer2u8’ ‘~/tmp/scratch/RtmpKlLubo’   ‘~/tmp/scratch/RtmpLDtr7J’ ‘~/tmp/scratch/RtmpLYA32a’   ‘~/tmp/scratch/RtmpLcEdiu’ ‘~/tmp/scratch/RtmpLel2zZ’   ‘~/tmp/scratch/RtmpLgeA3x’ ‘~/tmp/scratch/RtmpLzzYRQ’   ‘~/tmp/scratch/RtmpM9Y88U’ ‘~/tmp/scratch/RtmpMwXRQK’   ‘~/tmp/scratch/RtmpNNjw4C’ ‘~/tmp/scratch/RtmpOC167g’   ‘~/tmp/scratch/RtmpONcZU5’ ‘~/tmp/scratch/RtmpP7CkEl’   ‘~/tmp/scratch/RtmpPYsDvj’ ‘~/tmp/scratch/RtmpPsSCx9’   ‘~/tmp/scratch/RtmpPvOHX5’ ‘~/tmp/scratch/RtmpQFsAvr’   ‘~/tmp/scratch/RtmpQJlvEt’ ‘~/tmp/scratch/RtmpQbaADx’   ‘~/tmp/scratch/RtmpQdbORi’ ‘~/tmp/scratch/RtmpQf1hkw’   ‘~/tmp/scratch/RtmpRNV8OW’ ‘~/tmp/scratch/RtmpRYeXGB’   ‘~/tmp/scratch/RtmpSQObC4’ ‘~/tmp/scratch/RtmpSdh0KT’   ‘~/tmp/scratch/RtmpTv3w1a’ ‘~/tmp/scratch/RtmpUDx7Xj’   ‘~/tmp/scratch/RtmpUfByUe’ ‘~/tmp/scratch/RtmpUfmvih’   ‘~/tmp/scratch/RtmpV444NZ’ ‘~/tmp/scratch/RtmpWRBRIK’   ‘~/tmp/scratch/RtmpWtVRso’ ‘~/tmp/scratch/RtmpWvqa40’   ‘~/tmp/scratch/RtmpX5EwUw’ ‘~/tmp/scratch/RtmpY15qxh’   ‘~/tmp/scratch/RtmpYDriQz’ ‘~/tmp/scratch/RtmpZ2w4HS’   ‘~/tmp/scratch/RtmpZAFbJb’ ‘~/tmp/scratch/RtmpZDelk7’   ‘~/tmp/scratch/RtmpZyeboo’ ‘~/tmp/scratch/RtmpaD9oAp’   ‘~/tmp/scratch/Rtmpaznh8j’ ‘~/tmp/scratch/RtmpcdAZwB’   ‘~/tmp/scratch/RtmpchujXw’ ‘~/tmp/scratch/Rtmpcrvqcv’   ‘~/tmp/scratch/RtmpdKSUlv’ ‘~/tmp/scratch/RtmpdSZlJ3’   ‘~/tmp/scratch/RtmpduSBnp’ ‘~/tmp/scratch/RtmpeaEE2S’   ‘~/tmp/scratch/RtmpevErvn’ ‘~/tmp/scratch/Rtmpfs9Df0’   ‘~/tmp/scratch/RtmpfvJXn8’ ‘~/tmp/scratch/Rtmph7K0th’   ‘~/tmp/scratch/RtmphS3Fg1’ ‘~/tmp/scratch/RtmpheXP2M’   ‘~/tmp/scratch/Rtmpi7qwbA’ ‘~/tmp/scratch/RtmpihIVqX’   ‘~/tmp/scratch/RtmpjCwHvV’ ‘~/tmp/scratch/RtmpjJEOkd’   ‘~/tmp/scratch/RtmpjMNWHP’ ‘~/tmp/scratch/RtmpjYhjFm’   ‘~/tmp/scratch/Rtmpjxscsk’ ‘~/tmp/scratch/Rtmplc43nx’   ‘~/tmp/scratch/Rtmpm5YN4v’ ‘~/tmp/scratch/RtmpmxKEQc’   ‘~/tmp/scratch/RtmpnjEi3m’ ‘~/tmp/scratch/RtmpnmxgX2’   ‘~/tmp/scratch/RtmpoHbVrB’ ‘~/tmp/scratch/RtmpobGqa3’   ‘~/tmp/scratch/Rtmpp7Fu25’ ‘~/tmp/scratch/RtmppXkeIv’   ‘~/tmp/scratch/RtmppiM50x’ ‘~/tmp/scratch/Rtmpq9R8v0’   ‘~/tmp/scratch/Rtmpqa7Yar’ ‘~/tmp/scratch/RtmprOPKAo’   ‘~/tmp/scratch/RtmpsW2qIL’ ‘~/tmp/scratch/Rtmpse9mck’   ‘~/tmp/scratch/RtmptLnWtT’ ‘~/tmp/scratch/RtmptPrtsx’   ‘~/tmp/scratch/RtmptSRO5L’ ‘~/tmp/scratch/RtmptahjDB’   ‘~/tmp/scratch/RtmptdnX4h’ ‘~/tmp/scratch/RtmpuFOc5q’   ‘~/tmp/scratch/RtmpujOgYv’ ‘~/tmp/scratch/Rtmpumx4V7’   ‘~/tmp/scratch/RtmpuyYeJo’ ‘~/tmp/scratch/Rtmpv6aH83’   ‘~/tmp/scratch/RtmpvJFL1n’ ‘~/tmp/scratch/RtmpvVnndr’   ‘~/tmp/scratch/Rtmpw3MSS4’ ‘~/tmp/scratch/Rtmpwvk0Mn’   ‘~/tmp/scratch/RtmpxuFwQB’ ‘~/tmp/scratch/Rtmpyg9pN5’   ‘~/tmp/scratch/RtmpzcOYjJ’ ‘~/tmp/scratch/RtmpzdeIJt’   ‘~/tmp/scratch/RtmpzkjeXo’ ‘~/tmp/scratch/RtmpzwiWXz’   ‘~/tmp/scratch/ccDlyoRF.s’ ‘~/tmp/scratch/ccdVF6Ks.s’   ‘~/tmp/scratch/xvfb-run.09RZHr’ ‘~/tmp/scratch/xvfb-run.2BLZk8’   ‘~/tmp/scratch/xvfb-run.2SaQKX’ ‘~/tmp/scratch/xvfb-run.2aVkKe’   ‘~/tmp/scratch/xvfb-run.3EHB0O’ ‘~/tmp/scratch/xvfb-run.3FFG1L’   ‘~/tmp/scratch/xvfb-run.4PFFmC’ ‘~/tmp/scratch/xvfb-run.5D2XvI’   ‘~/tmp/scratch/xvfb-run.6hTk0U’ ‘~/tmp/scratch/xvfb-run.7BM5dV’   ‘~/tmp/scratch/xvfb-run.7zScUh’ ‘~/tmp/scratch/xvfb-run.9KhFbk’   ‘~/tmp/scratch/xvfb-run.ALbGw9’ ‘~/tmp/scratch/xvfb-run.B1Ryl3’   ‘~/tmp/scratch/xvfb-run.BOxIYo’ ‘~/tmp/scratch/xvfb-run.Bewcgj’   ‘~/tmp/scratch/xvfb-run.C1lmlc’ ‘~/tmp/scratch/xvfb-run.CRTlOe’   ‘~/tmp/scratch/xvfb-run.DxquDk’ ‘~/tmp/scratch/xvfb-run.GuwkMF’   ‘~/tmp/scratch/xvfb-run.HVZ6ME’ ‘~/tmp/scratch/xvfb-run.HkactV’   ‘~/tmp/scratch/xvfb-run.IrONyk’ ‘~/tmp/scratch/xvfb-run.LzuSm8’   ‘~/tmp/scratch/xvfb-run.MHUP3c’ ‘~/tmp/scratch/xvfb-run.NORnPQ’   ‘~/tmp/scratch/xvfb-run.RZGSSq’ ‘~/tmp/scratch/xvfb-run.TGkkxC’   ‘~/tmp/scratch/xvfb-run.U0Lcz3’ ‘~/tmp/scratch/xvfb-run.UW4AaN’   ‘~/tmp/scratch/xvfb-run.YT9Wfz’ ‘~/tmp/scratch/xvfb-run.btFcqJ’   ‘~/tmp/scratch/xvfb-run.cG45AU’ ‘~/tmp/scratch/xvfb-run.cIIqIb’   ‘~/tmp/scratch/xvfb-run.d9SQSR’ ‘~/tmp/scratch/xvfb-run.dZRSjh’   ‘~/tmp/scratch/xvfb-run.eHVuq2’ ‘~/tmp/scratch/xvfb-run.eekewh’   ‘~/tmp/scratch/xvfb-run.f8faOj’ ‘~/tmp/scratch/xvfb-run.fTJg54’   ‘~/tmp/scratch/xvfb-run.fnd6So’ ‘~/tmp/scratch/xvfb-run.gMbynU’   ‘~/tmp/scratch/xvfb-run.gZxhR3’ ‘~/tmp/scratch/xvfb-run.hlwLvA’   ‘~/tmp/scratch/xvfb-run.j4ehdE’ ‘~/tmp/scratch/xvfb-run.j50ZLf’   ‘~/tmp/scratch/xvfb-run.jtFtuH’ ‘~/tmp/scratch/xvfb-run.nLnKRd’   ‘~/tmp/scratch/xvfb-run.osxZBG’ ‘~/tmp/scratch/xvfb-run.qdEoBh’   ‘~/tmp/scratch/xvfb-run.uFERl7’ ‘~/tmp/scratch/xvfb-run.v1BmfX’   ‘~/tmp/scratch/xvfb-run.vEWs7S’ ‘~/tmp/scratch/xvfb-run.vZl05v’   ‘~/tmp/scratch/xvfb-run.vlCvGc’ ‘~/tmp/scratch/xvfb-run.vuhhkF’   ‘~/tmp/scratch/xvfb-run.wNL27I’ ‘~/tmp/scratch/xvfb-run.yoTMdM’
• DONE

Status: 1 NOTE