• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 11:16:07 UTC
• checking for file ‘BioVenn/DESCRIPTION’ ... OK
• this is package ‘BioVenn’ version ‘1.1.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Tim Hulsen <thulsen@gmail.com>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘BioVenn’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/5s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/6s] OK
• checking whether the package can be unloaded cleanly ... [5s/6s] OK
• checking whether the namespace can be loaded with stated dependencies ... [5s/6s] OK
• checking whether the namespace can be unloaded cleanly ... [5s/7s] OK
• checking loading without being on the library search path ... [4s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [21s/26s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/5s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [6s/6s] OK
• checking PDF version of manual ... [3s/4s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0B5HaT’ ‘~/tmp/scratch/Rtmp0Vhby4’   ‘~/tmp/scratch/Rtmp1TK0wP’ ‘~/tmp/scratch/Rtmp1ZznE3’   ‘~/tmp/scratch/Rtmp1wAwxg’ ‘~/tmp/scratch/Rtmp2GIDgN’   ‘~/tmp/scratch/Rtmp2cVyQn’ ‘~/tmp/scratch/Rtmp2mrunP’   ‘~/tmp/scratch/Rtmp2unhnc’ ‘~/tmp/scratch/Rtmp37hk5X’   ‘~/tmp/scratch/Rtmp3E3jjL’ ‘~/tmp/scratch/Rtmp49MjPG’   ‘~/tmp/scratch/Rtmp4CtBJ7’ ‘~/tmp/scratch/Rtmp4EOysQ’   ‘~/tmp/scratch/Rtmp4gs0ST’ ‘~/tmp/scratch/Rtmp60icxR’   ‘~/tmp/scratch/Rtmp6H4umX’ ‘~/tmp/scratch/Rtmp6Va5rQ’   ‘~/tmp/scratch/Rtmp6mBd9e’ ‘~/tmp/scratch/Rtmp6rL1kV’   ‘~/tmp/scratch/Rtmp722xoR’ ‘~/tmp/scratch/Rtmp9AaaKH’   ‘~/tmp/scratch/Rtmp9NK8zC’ ‘~/tmp/scratch/Rtmp9hetOp’   ‘~/tmp/scratch/RtmpA9zfks’ ‘~/tmp/scratch/RtmpAXdj7B’   ‘~/tmp/scratch/RtmpB3cWQW’ ‘~/tmp/scratch/RtmpBJ12zM’   ‘~/tmp/scratch/RtmpBLWzBv’ ‘~/tmp/scratch/RtmpBb8NbS’   ‘~/tmp/scratch/RtmpC54Y0b’ ‘~/tmp/scratch/RtmpCGrRM9’   ‘~/tmp/scratch/RtmpCILwgc’ ‘~/tmp/scratch/RtmpD9ogWI’   ‘~/tmp/scratch/RtmpDNHRlE’ ‘~/tmp/scratch/RtmpDci03l’   ‘~/tmp/scratch/RtmpDoofdj’ ‘~/tmp/scratch/RtmpDtD2qJ’   ‘~/tmp/scratch/RtmpEkXfJu’ ‘~/tmp/scratch/RtmpFSlhEz’   ‘~/tmp/scratch/RtmpGDI5tA’ ‘~/tmp/scratch/RtmpGEjL21’   ‘~/tmp/scratch/RtmpGFl18B’ ‘~/tmp/scratch/RtmpGhLGCq’   ‘~/tmp/scratch/RtmpHE9D7o’ ‘~/tmp/scratch/RtmpHJDxMy’   ‘~/tmp/scratch/RtmpIfLPhW’ ‘~/tmp/scratch/RtmpIxDrhK’   ‘~/tmp/scratch/RtmpJTTADE’ ‘~/tmp/scratch/RtmpJcf9dD’   ‘~/tmp/scratch/RtmpJhLFvl’ ‘~/tmp/scratch/RtmpKTEeFL’   ‘~/tmp/scratch/RtmpL8KZuR’ ‘~/tmp/scratch/RtmpLEr7Lg’   ‘~/tmp/scratch/RtmpMYpLU9’ ‘~/tmp/scratch/RtmpNA2WrT’   ‘~/tmp/scratch/RtmpNOqOKH’ ‘~/tmp/scratch/RtmpNsTe1j’   ‘~/tmp/scratch/RtmpO1p0Fl’ ‘~/tmp/scratch/RtmpOkzbf7’   ‘~/tmp/scratch/RtmpOm71Fs’ ‘~/tmp/scratch/RtmpQqR9o5’   ‘~/tmp/scratch/RtmpRJUvX8’ ‘~/tmp/scratch/RtmpRJvEXW’   ‘~/tmp/scratch/RtmpRLLtdx’ ‘~/tmp/scratch/RtmpS52SKU’   ‘~/tmp/scratch/RtmpSJc4zm’ ‘~/tmp/scratch/RtmpSWVGJJ’   ‘~/tmp/scratch/RtmpSqJxYT’ ‘~/tmp/scratch/RtmpSvhaw4’   ‘~/tmp/scratch/RtmpTkYoqe’ ‘~/tmp/scratch/RtmpTodE6d’   ‘~/tmp/scratch/RtmpU12caw’ ‘~/tmp/scratch/RtmpUcA8yK’   ‘~/tmp/scratch/RtmpUqtJKT’ ‘~/tmp/scratch/RtmpW8RUYl’   ‘~/tmp/scratch/RtmpXgWjEF’ ‘~/tmp/scratch/RtmpYQqXnn’   ‘~/tmp/scratch/RtmpYUHhIA’ ‘~/tmp/scratch/RtmpYbSVx0’   ‘~/tmp/scratch/RtmpZ0asmh’ ‘~/tmp/scratch/RtmpabEiux’   ‘~/tmp/scratch/RtmpanVko6’ ‘~/tmp/scratch/RtmpayKOo9’   ‘~/tmp/scratch/Rtmpaz8M9t’ ‘~/tmp/scratch/RtmpbHzyEe’   ‘~/tmp/scratch/RtmpbRJ11g’ ‘~/tmp/scratch/RtmpdB6Evw’   ‘~/tmp/scratch/RtmpdslOWK’ ‘~/tmp/scratch/Rtmpdu7IF8’   ‘~/tmp/scratch/Rtmpe5BaJm’ ‘~/tmp/scratch/RtmpeLguYO’   ‘~/tmp/scratch/RtmpeQ25kq’ ‘~/tmp/scratch/RtmpeShoyj’   ‘~/tmp/scratch/RtmpeaPTps’ ‘~/tmp/scratch/Rtmpf6UPwr’   ‘~/tmp/scratch/RtmpfsbegQ’ ‘~/tmp/scratch/Rtmpg3TCAC’   ‘~/tmp/scratch/RtmpgfkohV’ ‘~/tmp/scratch/RtmpgqmXx2’   ‘~/tmp/scratch/RtmphyZi5a’ ‘~/tmp/scratch/Rtmpi0KeXn’   ‘~/tmp/scratch/RtmpjALdjw’ ‘~/tmp/scratch/Rtmpk6UtWi’   ‘~/tmp/scratch/Rtmpl8d4l5’ ‘~/tmp/scratch/RtmplGpkdq’   ‘~/tmp/scratch/RtmplgvlbF’ ‘~/tmp/scratch/RtmpliFzms’   ‘~/tmp/scratch/Rtmplpr1Zt’ ‘~/tmp/scratch/Rtmpm129II’   ‘~/tmp/scratch/RtmpmEU7z5’ ‘~/tmp/scratch/RtmpmMWP0I’   ‘~/tmp/scratch/RtmpmoXCR1’ ‘~/tmp/scratch/RtmpnJfb1D’   ‘~/tmp/scratch/Rtmpp4FDEb’ ‘~/tmp/scratch/RtmppA2FWz’   ‘~/tmp/scratch/Rtmpq1CJ6K’ ‘~/tmp/scratch/Rtmpq40IPp’   ‘~/tmp/scratch/RtmpqCUtg8’ ‘~/tmp/scratch/RtmpqJfd5S’   ‘~/tmp/scratch/RtmprH0ghO’ ‘~/tmp/scratch/RtmprapBzU’   ‘~/tmp/scratch/Rtmps916mx’ ‘~/tmp/scratch/RtmpsK1hZb’   ‘~/tmp/scratch/Rtmpsf2crM’ ‘~/tmp/scratch/RtmpsfdARs’   ‘~/tmp/scratch/Rtmpsi2xqQ’ ‘~/tmp/scratch/RtmpuI4bAZ’   ‘~/tmp/scratch/RtmpuYtcM1’ ‘~/tmp/scratch/Rtmpv0Jnuf’   ‘~/tmp/scratch/RtmpvQOFIu’ ‘~/tmp/scratch/RtmpvT3W1y’   ‘~/tmp/scratch/RtmpvT7YdA’ ‘~/tmp/scratch/RtmpwQZk8Z’   ‘~/tmp/scratch/RtmpwTYm9V’ ‘~/tmp/scratch/RtmpxDY1rv’   ‘~/tmp/scratch/RtmpxFUn41’ ‘~/tmp/scratch/RtmpycwgUS’   ‘~/tmp/scratch/RtmpytFmBl’ ‘~/tmp/scratch/RtmpzJ3k9a’   ‘~/tmp/scratch/RtmpzX9uRt’ ‘~/tmp/scratch/Rtmpztb5u6’   ‘~/tmp/scratch/cci4l2q7.s’   ‘~/tmp/scratch/quarto-session834fdbf9e88f5e2a’   ‘~/tmp/scratch/xvfb-run.14eT6l’ ‘~/tmp/scratch/xvfb-run.15sekf’   ‘~/tmp/scratch/xvfb-run.1Eyq1c’ ‘~/tmp/scratch/xvfb-run.1PizkC’   ‘~/tmp/scratch/xvfb-run.3edjqF’ ‘~/tmp/scratch/xvfb-run.41cgHi’   ‘~/tmp/scratch/xvfb-run.5SnwCb’ ‘~/tmp/scratch/xvfb-run.649QIN’   ‘~/tmp/scratch/xvfb-run.6TjOJU’ ‘~/tmp/scratch/xvfb-run.8SUbUR’   ‘~/tmp/scratch/xvfb-run.9NTNPc’ ‘~/tmp/scratch/xvfb-run.A1iljF’   ‘~/tmp/scratch/xvfb-run.AugzSV’ ‘~/tmp/scratch/xvfb-run.BWItTC’   ‘~/tmp/scratch/xvfb-run.BuKgBS’ ‘~/tmp/scratch/xvfb-run.FNlGwz’   ‘~/tmp/scratch/xvfb-run.FZzIfX’ ‘~/tmp/scratch/xvfb-run.FkivJy’   ‘~/tmp/scratch/xvfb-run.FzttkH’ ‘~/tmp/scratch/xvfb-run.Gvd6p1’   ‘~/tmp/scratch/xvfb-run.GwjExD’ ‘~/tmp/scratch/xvfb-run.HwLbFr’   ‘~/tmp/scratch/xvfb-run.I3IfPQ’ ‘~/tmp/scratch/xvfb-run.IbVrHT’   ‘~/tmp/scratch/xvfb-run.JgkE72’ ‘~/tmp/scratch/xvfb-run.Jl1DqT’   ‘~/tmp/scratch/xvfb-run.JsuFMJ’ ‘~/tmp/scratch/xvfb-run.KyeE5b’   ‘~/tmp/scratch/xvfb-run.OFj1xC’ ‘~/tmp/scratch/xvfb-run.PMG4Ci’   ‘~/tmp/scratch/xvfb-run.Q1uIC0’ ‘~/tmp/scratch/xvfb-run.QzOVir’   ‘~/tmp/scratch/xvfb-run.SOmVt6’ ‘~/tmp/scratch/xvfb-run.Sjo3SL’   ‘~/tmp/scratch/xvfb-run.V8YA90’ ‘~/tmp/scratch/xvfb-run.VD5GIT’   ‘~/tmp/scratch/xvfb-run.WoSeRk’ ‘~/tmp/scratch/xvfb-run.Y8AOIK’   ‘~/tmp/scratch/xvfb-run.YvllKi’ ‘~/tmp/scratch/xvfb-run.a6cLnb’   ‘~/tmp/scratch/xvfb-run.aOJIzZ’ ‘~/tmp/scratch/xvfb-run.bu0odc’   ‘~/tmp/scratch/xvfb-run.cU0EeX’ ‘~/tmp/scratch/xvfb-run.ch9tW9’   ‘~/tmp/scratch/xvfb-run.d6TlVm’ ‘~/tmp/scratch/xvfb-run.i1rJaz’   ‘~/tmp/scratch/xvfb-run.iQ0sKO’ ‘~/tmp/scratch/xvfb-run.iid7UZ’   ‘~/tmp/scratch/xvfb-run.jRsjhS’ ‘~/tmp/scratch/xvfb-run.jUOwfY’   ‘~/tmp/scratch/xvfb-run.mxN53u’ ‘~/tmp/scratch/xvfb-run.nL2gkE’   ‘~/tmp/scratch/xvfb-run.o5jdk5’ ‘~/tmp/scratch/xvfb-run.oS9hvH’   ‘~/tmp/scratch/xvfb-run.oegc70’ ‘~/tmp/scratch/xvfb-run.px3Xt0’   ‘~/tmp/scratch/xvfb-run.qMeAiO’ ‘~/tmp/scratch/xvfb-run.rtUAvE’   ‘~/tmp/scratch/xvfb-run.t4iB4M’ ‘~/tmp/scratch/xvfb-run.tT1f4y’   ‘~/tmp/scratch/xvfb-run.tZTdwR’ ‘~/tmp/scratch/xvfb-run.uFSkbh’   ‘~/tmp/scratch/xvfb-run.vQGnsK’ ‘~/tmp/scratch/xvfb-run.xNXZn0’   ‘~/tmp/scratch/xvfb-run.zIjWqp’ ‘~/tmp/scratch/xvfb-run.zNUudr’
• DONE

Status: 2 NOTEs