• using R Under development (unstable) (2026-08-02 r90338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-03 11:15:46 UTC
• checking for file ‘BioPET/DESCRIPTION’ ... OK
• this is package ‘BioPET’ version ‘0.2.2’
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘BioPET’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/14s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [13s/15s] OK Examples with CPU (user + system) or elapsed time > 5s                            user system elapsed plot_enrichment_summaries 5.585 0.183 6.328
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp04rdh6’ ‘~/tmp/scratch/Rtmp0lSl0y’   ‘~/tmp/scratch/Rtmp1qWke6’ ‘~/tmp/scratch/Rtmp2E89B5’   ‘~/tmp/scratch/Rtmp2y9JB0’ ‘~/tmp/scratch/Rtmp3NJE2K’   ‘~/tmp/scratch/Rtmp3VuuuK’ ‘~/tmp/scratch/Rtmp3XMykW’   ‘~/tmp/scratch/Rtmp4n4hWp’ ‘~/tmp/scratch/Rtmp4ntDPg’   ‘~/tmp/scratch/Rtmp4ulY2Z’ ‘~/tmp/scratch/Rtmp55hlqI’   ‘~/tmp/scratch/Rtmp5EA3Jb’ ‘~/tmp/scratch/Rtmp5Hm0xp’   ‘~/tmp/scratch/Rtmp5s482F’ ‘~/tmp/scratch/Rtmp6yOmfT’   ‘~/tmp/scratch/Rtmp7EkKlT’ ‘~/tmp/scratch/Rtmp7Ltp7g’   ‘~/tmp/scratch/Rtmp82ElQE’ ‘~/tmp/scratch/Rtmp8Zjm2J’   ‘~/tmp/scratch/Rtmp8iFmqz’ ‘~/tmp/scratch/Rtmp98q1dM’   ‘~/tmp/scratch/RtmpAH1b8G’ ‘~/tmp/scratch/RtmpBAtmPX’   ‘~/tmp/scratch/RtmpBYJRga’ ‘~/tmp/scratch/RtmpBmxpw9’   ‘~/tmp/scratch/RtmpBujzqV’ ‘~/tmp/scratch/RtmpBzRqxq’   ‘~/tmp/scratch/RtmpC5w9uc’ ‘~/tmp/scratch/RtmpDRqLd2’   ‘~/tmp/scratch/RtmpEFrNGO’ ‘~/tmp/scratch/RtmpEH4ExF’   ‘~/tmp/scratch/RtmpEZGxfS’ ‘~/tmp/scratch/RtmpErSTV8’   ‘~/tmp/scratch/RtmpF04BSp’ ‘~/tmp/scratch/RtmpH1rbLU’   ‘~/tmp/scratch/RtmpHerVrk’ ‘~/tmp/scratch/RtmpIEEslW’   ‘~/tmp/scratch/RtmpIsVq3i’ ‘~/tmp/scratch/RtmpJWDLSF’   ‘~/tmp/scratch/RtmpJvSnYD’ ‘~/tmp/scratch/RtmpJzijyT’   ‘~/tmp/scratch/RtmpKer2u8’ ‘~/tmp/scratch/RtmpKett89’   ‘~/tmp/scratch/RtmpKmJ3ZT’ ‘~/tmp/scratch/RtmpLcEdiu’   ‘~/tmp/scratch/RtmpLgeA3x’ ‘~/tmp/scratch/RtmpLjEEwf’   ‘~/tmp/scratch/RtmpMwXRQK’ ‘~/tmp/scratch/RtmpNNjw4C’   ‘~/tmp/scratch/RtmpO9fTOR’ ‘~/tmp/scratch/RtmpONcZU5’   ‘~/tmp/scratch/RtmpOcrRjj’ ‘~/tmp/scratch/RtmpP1JA5v’   ‘~/tmp/scratch/RtmpP6jqfD’ ‘~/tmp/scratch/RtmpQ2uM9T’   ‘~/tmp/scratch/RtmpQAyuzs’ ‘~/tmp/scratch/RtmpQOWvSh’   ‘~/tmp/scratch/RtmpR6FZIu’ ‘~/tmp/scratch/RtmpRGkDrg’   ‘~/tmp/scratch/RtmpRfsxYq’ ‘~/tmp/scratch/RtmpTF6eDi’   ‘~/tmp/scratch/RtmpTv3w1a’ ‘~/tmp/scratch/RtmpUmeElL’   ‘~/tmp/scratch/RtmpV444NZ’ ‘~/tmp/scratch/RtmpV7bdRP’   ‘~/tmp/scratch/RtmpVT1V0J’ ‘~/tmp/scratch/RtmpVsLmNG’   ‘~/tmp/scratch/RtmpXYTr8u’ ‘~/tmp/scratch/RtmpYLE5R5’   ‘~/tmp/scratch/RtmpYQyPAv’ ‘~/tmp/scratch/RtmpYy5oTX’   ‘~/tmp/scratch/RtmpZGtRDy’ ‘~/tmp/scratch/Rtmpa0bDSp’   ‘~/tmp/scratch/RtmpaSrEef’ ‘~/tmp/scratch/Rtmpc61Eh7’   ‘~/tmp/scratch/RtmpcE8L2a’ ‘~/tmp/scratch/RtmpcdAZwB’   ‘~/tmp/scratch/Rtmpd0eZDb’ ‘~/tmp/scratch/RtmpdFa33R’   ‘~/tmp/scratch/RtmpdU4Qbj’ ‘~/tmp/scratch/Rtmpdfo0Nw’   ‘~/tmp/scratch/RtmpeaEE2S’ ‘~/tmp/scratch/RtmpeeltAT’   ‘~/tmp/scratch/RtmpfLHUqk’ ‘~/tmp/scratch/RtmpfyAng0’   ‘~/tmp/scratch/Rtmpg1PQFu’ ‘~/tmp/scratch/RtmpgPkuXF’   ‘~/tmp/scratch/RtmpgovdpZ’ ‘~/tmp/scratch/RtmpgzJLd4’   ‘~/tmp/scratch/RtmphB8aKl’ ‘~/tmp/scratch/RtmphQbK86’   ‘~/tmp/scratch/Rtmpi4jBxH’ ‘~/tmp/scratch/Rtmpi50cTg’   ‘~/tmp/scratch/RtmpjDfuU6’ ‘~/tmp/scratch/Rtmpjxscsk’   ‘~/tmp/scratch/Rtmpl3gN9l’ ‘~/tmp/scratch/RtmplFZ0AC’   ‘~/tmp/scratch/Rtmplpc3B3’ ‘~/tmp/scratch/Rtmpm1B3ax’   ‘~/tmp/scratch/Rtmpm45ZtT’ ‘~/tmp/scratch/RtmpnB1Ope’   ‘~/tmp/scratch/Rtmpnrw6mU’ ‘~/tmp/scratch/Rtmpo5PDa9’   ‘~/tmp/scratch/RtmpobGqa3’ ‘~/tmp/scratch/RtmpodUPWr’   ‘~/tmp/scratch/RtmppNzqOz’ ‘~/tmp/scratch/RtmppXkeIv’   ‘~/tmp/scratch/RtmppoVC7p’ ‘~/tmp/scratch/Rtmpq9R8v0’   ‘~/tmp/scratch/Rtmpqa7Yar’ ‘~/tmp/scratch/Rtmpqgy5iu’   ‘~/tmp/scratch/RtmpqohJ6Z’ ‘~/tmp/scratch/Rtmpqy61ul’   ‘~/tmp/scratch/RtmprCxb2A’ ‘~/tmp/scratch/RtmprbyxmZ’   ‘~/tmp/scratch/RtmprhJ0Y2’ ‘~/tmp/scratch/RtmpsihOpR’   ‘~/tmp/scratch/RtmpslDyGI’ ‘~/tmp/scratch/RtmptSRO5L’   ‘~/tmp/scratch/RtmptZ3whL’ ‘~/tmp/scratch/RtmptdnX4h’   ‘~/tmp/scratch/RtmptizNpJ’ ‘~/tmp/scratch/RtmpuFOc5q’   ‘~/tmp/scratch/Rtmpv3aKPm’ ‘~/tmp/scratch/Rtmpw3MSS4’   ‘~/tmp/scratch/Rtmpw8dlsp’ ‘~/tmp/scratch/Rtmpwvk0Mn’   ‘~/tmp/scratch/RtmpxOL9ZI’ ‘~/tmp/scratch/Rtmpxhi1NV’   ‘~/tmp/scratch/RtmpyfvMrM’ ‘~/tmp/scratch/Rtmpz63ZuS’   ‘~/tmp/scratch/RtmpzR2G8n’ ‘~/tmp/scratch/RtmpzkYoTN’   ‘~/tmp/scratch/ccdVF6Ks.s’ ‘~/tmp/scratch/xvfb-run.09RZHr’   ‘~/tmp/scratch/xvfb-run.1VdHMO’ ‘~/tmp/scratch/xvfb-run.2SaQKX’   ‘~/tmp/scratch/xvfb-run.33kHjo’ ‘~/tmp/scratch/xvfb-run.3EHB0O’   ‘~/tmp/scratch/xvfb-run.6vJyOs’ ‘~/tmp/scratch/xvfb-run.9Hn303’   ‘~/tmp/scratch/xvfb-run.9lrQnj’ ‘~/tmp/scratch/xvfb-run.9ttXD9’   ‘~/tmp/scratch/xvfb-run.B1Ryl3’ ‘~/tmp/scratch/xvfb-run.BOxIYo’   ‘~/tmp/scratch/xvfb-run.GuwkMF’ ‘~/tmp/scratch/xvfb-run.HVZ6ME’   ‘~/tmp/scratch/xvfb-run.I13SqN’ ‘~/tmp/scratch/xvfb-run.K5ONyf’   ‘~/tmp/scratch/xvfb-run.KorNU6’ ‘~/tmp/scratch/xvfb-run.Lgto7w’   ‘~/tmp/scratch/xvfb-run.LzuSm8’ ‘~/tmp/scratch/xvfb-run.Mjo2r6’   ‘~/tmp/scratch/xvfb-run.NORnPQ’ ‘~/tmp/scratch/xvfb-run.OYJ8LW’   ‘~/tmp/scratch/xvfb-run.PYJNwj’ ‘~/tmp/scratch/xvfb-run.RZGSSq’   ‘~/tmp/scratch/xvfb-run.Rdt4FC’ ‘~/tmp/scratch/xvfb-run.TGkkxC’   ‘~/tmp/scratch/xvfb-run.TtxZMf’ ‘~/tmp/scratch/xvfb-run.UW4AaN’   ‘~/tmp/scratch/xvfb-run.Vl4HXt’ ‘~/tmp/scratch/xvfb-run.YbVBwL’   ‘~/tmp/scratch/xvfb-run.aO0qUG’ ‘~/tmp/scratch/xvfb-run.btFcqJ’   ‘~/tmp/scratch/xvfb-run.bw0ZZr’ ‘~/tmp/scratch/xvfb-run.cG45AU’   ‘~/tmp/scratch/xvfb-run.dNIAyA’ ‘~/tmp/scratch/xvfb-run.e21HRW’   ‘~/tmp/scratch/xvfb-run.eHVuq2’ ‘~/tmp/scratch/xvfb-run.fnd6So’   ‘~/tmp/scratch/xvfb-run.gMbynU’ ‘~/tmp/scratch/xvfb-run.gZxhR3’   ‘~/tmp/scratch/xvfb-run.iFvP7R’ ‘~/tmp/scratch/xvfb-run.jeHYFS’   ‘~/tmp/scratch/xvfb-run.nLnKRd’ ‘~/tmp/scratch/xvfb-run.ni2EnM’   ‘~/tmp/scratch/xvfb-run.nnRuC1’ ‘~/tmp/scratch/xvfb-run.pd7Q6J’   ‘~/tmp/scratch/xvfb-run.qbstiU’ ‘~/tmp/scratch/xvfb-run.sF8yIy’   ‘~/tmp/scratch/xvfb-run.t0Cyd9’ ‘~/tmp/scratch/xvfb-run.tXZ3cE’   ‘~/tmp/scratch/xvfb-run.vXJil6’ ‘~/tmp/scratch/xvfb-run.wNL27I’   ‘~/tmp/scratch/xvfb-run.y5tPtS’ ‘~/tmp/scratch/xvfb-run.yl4uK5’   ‘~/tmp/scratch/xvfb-run.zb3Y58’
• DONE

Status: 1 NOTE