• using R Under development (unstable) (2026-08-02 r90338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-03 11:15:20 UTC
• checking for file ‘BiVariAn/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘BiVariAn’ version ‘1.0.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘BiVariAn’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/5s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/5s] OK
• checking whether the package can be unloaded cleanly ... [4s/5s] OK
• checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
• checking loading without being on the library search path ... [4s/5s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [21s/24s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [17s/18s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [11s/12s] OK   Running ‘spelling.R’ [0s/0s]   Running ‘testthat.R’ [11s/12s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [6s/8s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp00KFYm’ ‘~/tmp/scratch/Rtmp03FZLh’   ‘~/tmp/scratch/Rtmp03b6Ju’ ‘~/tmp/scratch/Rtmp04rdh6’   ‘~/tmp/scratch/Rtmp0SgILW’ ‘~/tmp/scratch/Rtmp0zmG5y’   ‘~/tmp/scratch/Rtmp1ee5et’ ‘~/tmp/scratch/Rtmp1hpfxv’   ‘~/tmp/scratch/Rtmp1pZH6p’ ‘~/tmp/scratch/Rtmp23vvTR’   ‘~/tmp/scratch/Rtmp2RGbjj’ ‘~/tmp/scratch/Rtmp36FNWi’   ‘~/tmp/scratch/Rtmp3DBhv8’ ‘~/tmp/scratch/Rtmp3DKopT’   ‘~/tmp/scratch/Rtmp3NJE2K’ ‘~/tmp/scratch/Rtmp3ebYmk’   ‘~/tmp/scratch/Rtmp4G4iPs’ ‘~/tmp/scratch/Rtmp5EA3Jb’   ‘~/tmp/scratch/Rtmp5Y2EW5’ ‘~/tmp/scratch/Rtmp5yfGBb’   ‘~/tmp/scratch/Rtmp658eDJ’ ‘~/tmp/scratch/Rtmp6U1iBq’   ‘~/tmp/scratch/Rtmp6aIdDB’ ‘~/tmp/scratch/Rtmp7EkKlT’   ‘~/tmp/scratch/Rtmp82ElQE’ ‘~/tmp/scratch/Rtmp8KFmW6’   ‘~/tmp/scratch/Rtmp8ws5o0’ ‘~/tmp/scratch/RtmpAZEhqD’   ‘~/tmp/scratch/RtmpAZvdo3’ ‘~/tmp/scratch/RtmpBTVyI7’   ‘~/tmp/scratch/RtmpBsn94A’ ‘~/tmp/scratch/RtmpBunBt1’   ‘~/tmp/scratch/RtmpEFrNGO’ ‘~/tmp/scratch/RtmpEkyIeM’   ‘~/tmp/scratch/RtmpH2sgfI’ ‘~/tmp/scratch/RtmpHJxd5V’   ‘~/tmp/scratch/RtmpITzCim’ ‘~/tmp/scratch/RtmpIsVq3i’   ‘~/tmp/scratch/RtmpJ5233s’ ‘~/tmp/scratch/RtmpKer2u8’   ‘~/tmp/scratch/RtmpKwWIYk’ ‘~/tmp/scratch/RtmpLcEdiu’   ‘~/tmp/scratch/RtmpLgeA3x’ ‘~/tmp/scratch/RtmpMRAi17’   ‘~/tmp/scratch/RtmpMm30gA’ ‘~/tmp/scratch/RtmpNNjw4C’   ‘~/tmp/scratch/RtmpNtj57e’ ‘~/tmp/scratch/RtmpNvKuqi’   ‘~/tmp/scratch/RtmpOC167g’ ‘~/tmp/scratch/RtmpONcZU5’   ‘~/tmp/scratch/RtmpOcrRjj’ ‘~/tmp/scratch/RtmpOhfCKw’   ‘~/tmp/scratch/RtmpP7CkEl’ ‘~/tmp/scratch/RtmpPHlscI’   ‘~/tmp/scratch/RtmpPsSCx9’ ‘~/tmp/scratch/RtmpQFsAvr’   ‘~/tmp/scratch/RtmpQKGIyF’ ‘~/tmp/scratch/RtmpQPOaKz’   ‘~/tmp/scratch/RtmpQdbORi’ ‘~/tmp/scratch/RtmpRNV8OW’   ‘~/tmp/scratch/RtmpRjCsRF’ ‘~/tmp/scratch/RtmpRngXLJ’   ‘~/tmp/scratch/RtmpSNTGH0’ ‘~/tmp/scratch/RtmpSQObC4’   ‘~/tmp/scratch/RtmpT1h0jT’ ‘~/tmp/scratch/RtmpTtOh26’   ‘~/tmp/scratch/RtmpTv3w1a’ ‘~/tmp/scratch/RtmpU3nBqA’   ‘~/tmp/scratch/RtmpULxc5V’ ‘~/tmp/scratch/RtmpUNN5M3’   ‘~/tmp/scratch/RtmpUfmvih’ ‘~/tmp/scratch/RtmpUlZrhM’   ‘~/tmp/scratch/RtmpUmeElL’ ‘~/tmp/scratch/RtmpV3usxg’   ‘~/tmp/scratch/RtmpV444NZ’ ‘~/tmp/scratch/RtmpV7bdRP’   ‘~/tmp/scratch/RtmpVvqJwC’ ‘~/tmp/scratch/RtmpVy40en’   ‘~/tmp/scratch/RtmpWiR5Uq’ ‘~/tmp/scratch/RtmpWlCGER’   ‘~/tmp/scratch/RtmpWvqa40’ ‘~/tmp/scratch/RtmpX97HTk’   ‘~/tmp/scratch/RtmpYDriQz’ ‘~/tmp/scratch/RtmpZ6sL99’   ‘~/tmp/scratch/RtmpZDelk7’ ‘~/tmp/scratch/RtmpZyeboo’   ‘~/tmp/scratch/RtmpaD9oAp’ ‘~/tmp/scratch/RtmpbDbrZx’   ‘~/tmp/scratch/RtmpbJPIm6’ ‘~/tmp/scratch/RtmpcOBCv4’   ‘~/tmp/scratch/RtmpcdAZwB’ ‘~/tmp/scratch/RtmpchujXw’   ‘~/tmp/scratch/Rtmpd0eZDb’ ‘~/tmp/scratch/Rtmpd7wdBc’   ‘~/tmp/scratch/RtmpdDFmv3’ ‘~/tmp/scratch/RtmpdSZlJ3’   ‘~/tmp/scratch/RtmpdTeutl’ ‘~/tmp/scratch/RtmpdgJLab’   ‘~/tmp/scratch/RtmpduSBnp’ ‘~/tmp/scratch/RtmpeaEE2S’   ‘~/tmp/scratch/RtmpfFGWVc’ ‘~/tmp/scratch/RtmpfvJXn8’   ‘~/tmp/scratch/Rtmph7K0th’ ‘~/tmp/scratch/RtmphFQq30’   ‘~/tmp/scratch/Rtmpi7qwbA’ ‘~/tmp/scratch/RtmpiCzGMB’   ‘~/tmp/scratch/RtmpihIVqX’ ‘~/tmp/scratch/RtmpjJEOkd’   ‘~/tmp/scratch/RtmpjXysIl’ ‘~/tmp/scratch/Rtmpjxscsk’   ‘~/tmp/scratch/RtmpkAMVp6’ ‘~/tmp/scratch/RtmpkvKOUN’   ‘~/tmp/scratch/RtmplX9Nr6’ ‘~/tmp/scratch/RtmplYb5mT’   ‘~/tmp/scratch/Rtmplpc3B3’ ‘~/tmp/scratch/RtmpmxKEQc’   ‘~/tmp/scratch/RtmpneY9eY’ ‘~/tmp/scratch/RtmpnjEi3m’   ‘~/tmp/scratch/RtmpnmxgX2’ ‘~/tmp/scratch/Rtmpnrw6mU’   ‘~/tmp/scratch/RtmpobGqa3’ ‘~/tmp/scratch/RtmpoeyLYQ’   ‘~/tmp/scratch/RtmppYQj2a’ ‘~/tmp/scratch/Rtmppmyk5B’   ‘~/tmp/scratch/Rtmpq9R8v0’ ‘~/tmp/scratch/RtmpqXbEfK’   ‘~/tmp/scratch/Rtmpqa7Yar’ ‘~/tmp/scratch/Rtmps3wejy’   ‘~/tmp/scratch/RtmpsKb3We’ ‘~/tmp/scratch/Rtmpse9mck’   ‘~/tmp/scratch/RtmpsihOpR’ ‘~/tmp/scratch/RtmptSRO5L’   ‘~/tmp/scratch/RtmptdnX4h’ ‘~/tmp/scratch/Rtmpu3qVhC’   ‘~/tmp/scratch/RtmpuFOc5q’ ‘~/tmp/scratch/RtmpuUuDzl’   ‘~/tmp/scratch/Rtmpuiwk6t’ ‘~/tmp/scratch/RtmpulIWzR’   ‘~/tmp/scratch/Rtmpumx4V7’ ‘~/tmp/scratch/RtmpvR6Kfg’   ‘~/tmp/scratch/Rtmpw3MSS4’ ‘~/tmp/scratch/Rtmpwvk0Mn’   ‘~/tmp/scratch/RtmpxuFwQB’ ‘~/tmp/scratch/Rtmpyg9pN5’   ‘~/tmp/scratch/RtmpylHVBG’ ‘~/tmp/scratch/RtmpzGxBHV’   ‘~/tmp/scratch/RtmpzHUafF’ ‘~/tmp/scratch/RtmpzUHN2Y’   ‘~/tmp/scratch/RtmpzcOYjJ’ ‘~/tmp/scratch/RtmpzdeIJt’   ‘~/tmp/scratch/RtmpzkjeXo’ ‘~/tmp/scratch/Rtmpzs8Eve’   ‘~/tmp/scratch/RtmpzsphGF’ ‘~/tmp/scratch/RtmpzuKyb6’   ‘~/tmp/scratch/ccDlyoRF.s’ ‘~/tmp/scratch/xvfb-run.0c5ZYB’   ‘~/tmp/scratch/xvfb-run.2BLZk8’ ‘~/tmp/scratch/xvfb-run.2aVkKe’   ‘~/tmp/scratch/xvfb-run.3EHB0O’ ‘~/tmp/scratch/xvfb-run.3FFG1L’   ‘~/tmp/scratch/xvfb-run.3TGzow’ ‘~/tmp/scratch/xvfb-run.4PFFmC’   ‘~/tmp/scratch/xvfb-run.5D2XvI’ ‘~/tmp/scratch/xvfb-run.6hTk0U’   ‘~/tmp/scratch/xvfb-run.7BM5dV’ ‘~/tmp/scratch/xvfb-run.7zScUh’   ‘~/tmp/scratch/xvfb-run.9h13qm’ ‘~/tmp/scratch/xvfb-run.ALbGw9’   ‘~/tmp/scratch/xvfb-run.B1Ryl3’ ‘~/tmp/scratch/xvfb-run.BOxIYo’   ‘~/tmp/scratch/xvfb-run.Bewcgj’ ‘~/tmp/scratch/xvfb-run.BgfzW3’   ‘~/tmp/scratch/xvfb-run.C1lmlc’ ‘~/tmp/scratch/xvfb-run.CRTlOe’   ‘~/tmp/scratch/xvfb-run.DxquDk’ ‘~/tmp/scratch/xvfb-run.EzMnVS’   ‘~/tmp/scratch/xvfb-run.GuwkMF’ ‘~/tmp/scratch/xvfb-run.HVZ6ME’   ‘~/tmp/scratch/xvfb-run.HkactV’ ‘~/tmp/scratch/xvfb-run.IPuUgD’   ‘~/tmp/scratch/xvfb-run.IrONyk’ ‘~/tmp/scratch/xvfb-run.Lgto7w’   ‘~/tmp/scratch/xvfb-run.LzuSm8’ ‘~/tmp/scratch/xvfb-run.MHUP3c’   ‘~/tmp/scratch/xvfb-run.NORnPQ’ ‘~/tmp/scratch/xvfb-run.OYJ8LW’   ‘~/tmp/scratch/xvfb-run.RZGSSq’ ‘~/tmp/scratch/xvfb-run.SmRg5u’   ‘~/tmp/scratch/xvfb-run.TGkkxC’ ‘~/tmp/scratch/xvfb-run.Tryfxy’   ‘~/tmp/scratch/xvfb-run.UW4AaN’ ‘~/tmp/scratch/xvfb-run.YT9Wfz’   ‘~/tmp/scratch/xvfb-run.btFcqJ’ ‘~/tmp/scratch/xvfb-run.cG45AU’   ‘~/tmp/scratch/xvfb-run.cIIqIb’ ‘~/tmp/scratch/xvfb-run.d9SQSR’   ‘~/tmp/scratch/xvfb-run.dZRSjh’ ‘~/tmp/scratch/xvfb-run.eF2ayg’   ‘~/tmp/scratch/xvfb-run.eHVuq2’ ‘~/tmp/scratch/xvfb-run.fTJg54’   ‘~/tmp/scratch/xvfb-run.fnd6So’ ‘~/tmp/scratch/xvfb-run.gMbynU’   ‘~/tmp/scratch/xvfb-run.gQ3zSi’ ‘~/tmp/scratch/xvfb-run.gZxhR3’   ‘~/tmp/scratch/xvfb-run.glucET’ ‘~/tmp/scratch/xvfb-run.h4behY’   ‘~/tmp/scratch/xvfb-run.hlwLvA’ ‘~/tmp/scratch/xvfb-run.j4ehdE’   ‘~/tmp/scratch/xvfb-run.j50ZLf’ ‘~/tmp/scratch/xvfb-run.jeHYFS’   ‘~/tmp/scratch/xvfb-run.nLnKRd’ ‘~/tmp/scratch/xvfb-run.nzyYvU’   ‘~/tmp/scratch/xvfb-run.osxZBG’ ‘~/tmp/scratch/xvfb-run.qdEoBh’   ‘~/tmp/scratch/xvfb-run.r88Ot7’ ‘~/tmp/scratch/xvfb-run.tdN2RY’   ‘~/tmp/scratch/xvfb-run.tge1A5’ ‘~/tmp/scratch/xvfb-run.u5Mjl6’   ‘~/tmp/scratch/xvfb-run.uFERl7’ ‘~/tmp/scratch/xvfb-run.v1BmfX’   ‘~/tmp/scratch/xvfb-run.vEWs7S’ ‘~/tmp/scratch/xvfb-run.vXJil6’   ‘~/tmp/scratch/xvfb-run.vZl05v’ ‘~/tmp/scratch/xvfb-run.wNL27I’   ‘~/tmp/scratch/xvfb-run.yl4uK5’ ‘~/tmp/scratch/xvfb-run.yoTMdM’
• DONE

Status: 1 NOTE