• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 11:13:50 UTC
• checking for file ‘BayesSUR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘BayesSUR’ version ‘2.3-3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘BayesSUR’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking C++ specification ... INFO   specified C++17
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/17s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... NOTE Rd files without \usage:   ‘BayesSUR_internal.Rd’ \arguments should not be documented without \usage.
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/5s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [4s/7s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp09cXDQ’ ‘~/tmp/scratch/Rtmp0sQjxi’   ‘~/tmp/scratch/Rtmp1BFQF9’ ‘~/tmp/scratch/Rtmp1E3FWh’   ‘~/tmp/scratch/Rtmp1UoBrU’ ‘~/tmp/scratch/Rtmp26fKbm’   ‘~/tmp/scratch/Rtmp2QTSG7’ ‘~/tmp/scratch/Rtmp2SXiYD’   ‘~/tmp/scratch/Rtmp2il3Nt’ ‘~/tmp/scratch/Rtmp3A4ZNl’   ‘~/tmp/scratch/Rtmp3UJbcF’ ‘~/tmp/scratch/Rtmp3eBQmU’   ‘~/tmp/scratch/Rtmp4NOwSA’ ‘~/tmp/scratch/Rtmp4j4D0q’   ‘~/tmp/scratch/Rtmp4q8njX’ ‘~/tmp/scratch/Rtmp4x86Hz’   ‘~/tmp/scratch/Rtmp5NiWrK’ ‘~/tmp/scratch/Rtmp5aG87X’   ‘~/tmp/scratch/Rtmp6a79Mn’ ‘~/tmp/scratch/Rtmp6ez4TY’   ‘~/tmp/scratch/Rtmp83dG4I’ ‘~/tmp/scratch/Rtmp96mLue’   ‘~/tmp/scratch/Rtmp9YZeF0’ ‘~/tmp/scratch/Rtmp9zXbLL’   ‘~/tmp/scratch/RtmpAWNHtY’ ‘~/tmp/scratch/RtmpAlVg4h’   ‘~/tmp/scratch/RtmpAxOyK5’ ‘~/tmp/scratch/RtmpBEPdw0’   ‘~/tmp/scratch/RtmpBvpMGr’ ‘~/tmp/scratch/RtmpCbgS3X’   ‘~/tmp/scratch/RtmpDFlOHq’ ‘~/tmp/scratch/RtmpDipMn4’   ‘~/tmp/scratch/RtmpE1m7DU’ ‘~/tmp/scratch/RtmpEkc9k4’   ‘~/tmp/scratch/RtmpFKmNvK’ ‘~/tmp/scratch/RtmpFOiPdx’   ‘~/tmp/scratch/RtmpFRPXx2’ ‘~/tmp/scratch/RtmpFWcpUT’   ‘~/tmp/scratch/RtmpFpjiNj’ ‘~/tmp/scratch/RtmpFubp4r’   ‘~/tmp/scratch/RtmpG79lH1’ ‘~/tmp/scratch/RtmpH0TAe2’   ‘~/tmp/scratch/RtmpHUOJr9’ ‘~/tmp/scratch/RtmpHVw4rT’   ‘~/tmp/scratch/RtmpHnG8uw’ ‘~/tmp/scratch/RtmpIELoHN’   ‘~/tmp/scratch/RtmpIPgJkM’ ‘~/tmp/scratch/RtmpIoyuAk’   ‘~/tmp/scratch/RtmpJ8QKi6’ ‘~/tmp/scratch/RtmpJUwz2F’   ‘~/tmp/scratch/RtmpL4PG6W’ ‘~/tmp/scratch/RtmpM2RTXS’   ‘~/tmp/scratch/RtmpMKv5zT’ ‘~/tmp/scratch/RtmpN9Azkr’   ‘~/tmp/scratch/RtmpNMzIGB’ ‘~/tmp/scratch/RtmpPC0B1e’   ‘~/tmp/scratch/RtmpPgx5Vq’ ‘~/tmp/scratch/RtmpPodewL’   ‘~/tmp/scratch/RtmpR1oUd2’ ‘~/tmp/scratch/RtmpRh9RGP’   ‘~/tmp/scratch/RtmpSPgd10’ ‘~/tmp/scratch/RtmpSStYHC’   ‘~/tmp/scratch/RtmpSo7UgT’ ‘~/tmp/scratch/RtmpStCp4g’   ‘~/tmp/scratch/RtmpSxr3Yx’ ‘~/tmp/scratch/RtmpT9PLYr’   ‘~/tmp/scratch/RtmpTQRzqu’ ‘~/tmp/scratch/RtmpTuVlNV’   ‘~/tmp/scratch/RtmpU3nYXB’ ‘~/tmp/scratch/RtmpUJWmwI’   ‘~/tmp/scratch/RtmpUQGnO8’ ‘~/tmp/scratch/RtmpVAbZm5’   ‘~/tmp/scratch/RtmpVm4T0G’ ‘~/tmp/scratch/RtmpW7HMsd’   ‘~/tmp/scratch/RtmpX4PfgE’ ‘~/tmp/scratch/RtmpXf1hDy’   ‘~/tmp/scratch/RtmpY35kH4’ ‘~/tmp/scratch/RtmpYThgEj’   ‘~/tmp/scratch/RtmpZVQeSd’ ‘~/tmp/scratch/Rtmpa2MyZA’   ‘~/tmp/scratch/Rtmpaj4N2E’ ‘~/tmp/scratch/RtmpbkabrT’   ‘~/tmp/scratch/RtmpbvJFnp’ ‘~/tmp/scratch/RtmpccktL7’   ‘~/tmp/scratch/RtmpculH2n’ ‘~/tmp/scratch/RtmpdJzKrA’   ‘~/tmp/scratch/RtmpdzfbPz’ ‘~/tmp/scratch/RtmpeNfoIv’   ‘~/tmp/scratch/RtmpeO2vvU’ ‘~/tmp/scratch/Rtmpf5QRCJ’   ‘~/tmp/scratch/Rtmpf76Hlf’ ‘~/tmp/scratch/RtmpfkZLpj’   ‘~/tmp/scratch/RtmpgU0Hie’ ‘~/tmp/scratch/RtmpgmMVfx’   ‘~/tmp/scratch/RtmphRX4U4’ ‘~/tmp/scratch/RtmphgZCjU’   ‘~/tmp/scratch/Rtmpiq2mpF’ ‘~/tmp/scratch/RtmpitfLgx’   ‘~/tmp/scratch/Rtmpj8OdOj’ ‘~/tmp/scratch/RtmpjFnLsj’   ‘~/tmp/scratch/Rtmpjqj8PC’ ‘~/tmp/scratch/RtmpkEXN8B’   ‘~/tmp/scratch/RtmplY7Lds’ ‘~/tmp/scratch/RtmplwzvRr’   ‘~/tmp/scratch/RtmpmASDwj’ ‘~/tmp/scratch/RtmpmoV6hG’   ‘~/tmp/scratch/RtmpndIFP6’ ‘~/tmp/scratch/RtmpoVcYZc’   ‘~/tmp/scratch/RtmpowqFAt’ ‘~/tmp/scratch/Rtmpprnefq’   ‘~/tmp/scratch/RtmpqZ9XQf’ ‘~/tmp/scratch/RtmpqoKpB5’   ‘~/tmp/scratch/RtmprHVz0A’ ‘~/tmp/scratch/RtmpsRyKLe’   ‘~/tmp/scratch/RtmpsjgTHn’ ‘~/tmp/scratch/Rtmptb3XAK’   ‘~/tmp/scratch/Rtmpu7MnBe’ ‘~/tmp/scratch/RtmpuAhLpt’   ‘~/tmp/scratch/RtmpuxlYgB’ ‘~/tmp/scratch/RtmpvDxXdD’   ‘~/tmp/scratch/RtmpvW8IFi’ ‘~/tmp/scratch/RtmpwQ9no6’   ‘~/tmp/scratch/RtmpwSXjhG’ ‘~/tmp/scratch/RtmpwaedtG’   ‘~/tmp/scratch/RtmpxP1NdJ’ ‘~/tmp/scratch/RtmpxYdCwn’   ‘~/tmp/scratch/RtmpxhKuw3’ ‘~/tmp/scratch/Rtmpxj5sFQ’   ‘~/tmp/scratch/Rtmpxp7rtp’ ‘~/tmp/scratch/Rtmpy29i7u’   ‘~/tmp/scratch/Rtmpz0ROyA’ ‘~/tmp/scratch/RtmpzO8XHT’   ‘~/tmp/scratch/RtmpzTamgS’ ‘~/tmp/scratch/RtmpzfyBPa’   ‘~/tmp/scratch/RtmpzzEqle’ ‘~/tmp/scratch/cc3sVDf5.s’   ‘~/tmp/scratch/xvfb-run.0eBxib’ ‘~/tmp/scratch/xvfb-run.2ZN2JK’   ‘~/tmp/scratch/xvfb-run.2j2avv’ ‘~/tmp/scratch/xvfb-run.3Jr5r7’   ‘~/tmp/scratch/xvfb-run.5cqbx1’ ‘~/tmp/scratch/xvfb-run.6jmngW’   ‘~/tmp/scratch/xvfb-run.8Jm7N9’ ‘~/tmp/scratch/xvfb-run.945Lll’   ‘~/tmp/scratch/xvfb-run.DOw9mS’ ‘~/tmp/scratch/xvfb-run.DS4CLQ’   ‘~/tmp/scratch/xvfb-run.G30MeC’ ‘~/tmp/scratch/xvfb-run.GBIEJi’   ‘~/tmp/scratch/xvfb-run.HhUDC8’ ‘~/tmp/scratch/xvfb-run.I56vR5’   ‘~/tmp/scratch/xvfb-run.IE2chZ’ ‘~/tmp/scratch/xvfb-run.IRvkg3’   ‘~/tmp/scratch/xvfb-run.LKhMhF’ ‘~/tmp/scratch/xvfb-run.M91JAb’   ‘~/tmp/scratch/xvfb-run.MCyqos’ ‘~/tmp/scratch/xvfb-run.NGma4W’   ‘~/tmp/scratch/xvfb-run.ORFLEF’ ‘~/tmp/scratch/xvfb-run.PtIQTA’   ‘~/tmp/scratch/xvfb-run.QaUoQZ’ ‘~/tmp/scratch/xvfb-run.Qk1EuM’   ‘~/tmp/scratch/xvfb-run.RtaldY’ ‘~/tmp/scratch/xvfb-run.RxNQKL’   ‘~/tmp/scratch/xvfb-run.TRZOv3’ ‘~/tmp/scratch/xvfb-run.VZNzXn’   ‘~/tmp/scratch/xvfb-run.Xbkt9H’ ‘~/tmp/scratch/xvfb-run.ZEP3vS’   ‘~/tmp/scratch/xvfb-run.ZNq0Au’ ‘~/tmp/scratch/xvfb-run.aFwmJ5’   ‘~/tmp/scratch/xvfb-run.cjvONg’ ‘~/tmp/scratch/xvfb-run.f0v8rx’   ‘~/tmp/scratch/xvfb-run.gEDNm2’ ‘~/tmp/scratch/xvfb-run.gJJcMK’   ‘~/tmp/scratch/xvfb-run.gxy28D’ ‘~/tmp/scratch/xvfb-run.iHAcys’   ‘~/tmp/scratch/xvfb-run.l2RBmW’ ‘~/tmp/scratch/xvfb-run.nWK6C5’   ‘~/tmp/scratch/xvfb-run.pIJY3Z’ ‘~/tmp/scratch/xvfb-run.t1ZTyy’   ‘~/tmp/scratch/xvfb-run.tC9eHa’ ‘~/tmp/scratch/xvfb-run.tG7JAo’   ‘~/tmp/scratch/xvfb-run.uDawOr’ ‘~/tmp/scratch/xvfb-run.uxURRb’   ‘~/tmp/scratch/xvfb-run.v40a1D’ ‘~/tmp/scratch/xvfb-run.v7LTp5’   ‘~/tmp/scratch/xvfb-run.vtgw83’ ‘~/tmp/scratch/xvfb-run.x7ks6I’   ‘~/tmp/scratch/xvfb-run.yXg7gr’
• DONE

Status: 2 NOTEs