• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 11:14:18 UTC
• checking for file ‘BayesSUR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘BayesSUR’ version ‘2.3-3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘BayesSUR’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking C++ specification ... INFO   specified C++17
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/17s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... NOTE Rd files without \usage:   ‘BayesSUR_internal.Rd’ \arguments should not be documented without \usage.
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/5s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [4s/5s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp13yrcA’ ‘~/tmp/scratch/Rtmp1BMoJ0’   ‘~/tmp/scratch/Rtmp1qMYnd’ ‘~/tmp/scratch/Rtmp1xQqYv’   ‘~/tmp/scratch/Rtmp1zVFry’ ‘~/tmp/scratch/Rtmp24iN7F’   ‘~/tmp/scratch/Rtmp27aFlV’ ‘~/tmp/scratch/Rtmp428YYh’   ‘~/tmp/scratch/Rtmp47GSz0’ ‘~/tmp/scratch/Rtmp4VgZKc’   ‘~/tmp/scratch/Rtmp4bnvA3’ ‘~/tmp/scratch/Rtmp4wMuZX’   ‘~/tmp/scratch/Rtmp5QmETb’ ‘~/tmp/scratch/Rtmp5YYO0T’   ‘~/tmp/scratch/Rtmp6mBTfP’ ‘~/tmp/scratch/Rtmp6qbQcM’   ‘~/tmp/scratch/Rtmp7IeycS’ ‘~/tmp/scratch/Rtmp7ZmW9U’   ‘~/tmp/scratch/Rtmp8IZiNC’ ‘~/tmp/scratch/Rtmp8KjK6G’   ‘~/tmp/scratch/Rtmp8OZPSu’ ‘~/tmp/scratch/Rtmp8f694m’   ‘~/tmp/scratch/Rtmp8mN6ni’ ‘~/tmp/scratch/Rtmp8qfirk’   ‘~/tmp/scratch/Rtmp8v7PDD’ ‘~/tmp/scratch/Rtmp8xWgbe’   ‘~/tmp/scratch/Rtmp98YhZN’ ‘~/tmp/scratch/RtmpAMPmcp’   ‘~/tmp/scratch/RtmpARVSO8’ ‘~/tmp/scratch/RtmpARo834’   ‘~/tmp/scratch/RtmpAiZj6F’ ‘~/tmp/scratch/RtmpAzLYg8’   ‘~/tmp/scratch/RtmpC2gpav’ ‘~/tmp/scratch/RtmpChF6wZ’   ‘~/tmp/scratch/RtmpDieLP8’ ‘~/tmp/scratch/RtmpDuGt9U’   ‘~/tmp/scratch/RtmpE4qsvT’ ‘~/tmp/scratch/RtmpEDHVt5’   ‘~/tmp/scratch/RtmpFSUV7Z’ ‘~/tmp/scratch/RtmpFchhbs’   ‘~/tmp/scratch/RtmpFjD28m’ ‘~/tmp/scratch/RtmpFskCuo’   ‘~/tmp/scratch/RtmpGa9DGR’ ‘~/tmp/scratch/RtmpHs3ZGt’   ‘~/tmp/scratch/RtmpIEUqH0’ ‘~/tmp/scratch/RtmpJF8nKt’   ‘~/tmp/scratch/RtmpJOKZ5h’ ‘~/tmp/scratch/RtmpJVjAa7’   ‘~/tmp/scratch/RtmpJy1SP0’ ‘~/tmp/scratch/RtmpKaD4Mn’   ‘~/tmp/scratch/RtmpLFbdG4’ ‘~/tmp/scratch/RtmpLyf8hD’   ‘~/tmp/scratch/RtmpM27kP5’ ‘~/tmp/scratch/RtmpMFVEen’   ‘~/tmp/scratch/RtmpMqyVXy’ ‘~/tmp/scratch/RtmpNYU1wE’   ‘~/tmp/scratch/RtmpNtexdA’ ‘~/tmp/scratch/RtmpNvhwxE’   ‘~/tmp/scratch/RtmpOXXCQw’ ‘~/tmp/scratch/RtmpP7alTU’   ‘~/tmp/scratch/RtmpPrJSBM’ ‘~/tmp/scratch/RtmpRwoYot’   ‘~/tmp/scratch/RtmpS6FFQW’ ‘~/tmp/scratch/RtmpSRRyaC’   ‘~/tmp/scratch/RtmpSekbJr’ ‘~/tmp/scratch/RtmpShuw71’   ‘~/tmp/scratch/RtmpTfFDRB’ ‘~/tmp/scratch/RtmpTvK6QP’   ‘~/tmp/scratch/RtmpUCjrhc’ ‘~/tmp/scratch/RtmpUbwPuL’   ‘~/tmp/scratch/RtmpUkthfK’ ‘~/tmp/scratch/RtmpUmo3jF’   ‘~/tmp/scratch/RtmpUqOi7b’ ‘~/tmp/scratch/RtmpXkpKHk’   ‘~/tmp/scratch/RtmpXwqgKN’ ‘~/tmp/scratch/RtmpYqHYo1’   ‘~/tmp/scratch/RtmpZTCZLA’ ‘~/tmp/scratch/RtmpZZq9Du’   ‘~/tmp/scratch/RtmpZdm9A3’ ‘~/tmp/scratch/RtmpZluBVI’   ‘~/tmp/scratch/Rtmpa9RhwT’ ‘~/tmp/scratch/RtmpaDWWux’   ‘~/tmp/scratch/RtmpaMN1mB’ ‘~/tmp/scratch/RtmparaOmm’   ‘~/tmp/scratch/Rtmpaw8y6L’ ‘~/tmp/scratch/Rtmpc4NVaL’   ‘~/tmp/scratch/RtmpdZXm9X’ ‘~/tmp/scratch/Rtmpek4J57’   ‘~/tmp/scratch/RtmpfIGOjs’ ‘~/tmp/scratch/RtmpfaTYVp’   ‘~/tmp/scratch/RtmpgEyHVP’ ‘~/tmp/scratch/RtmpgOwuqa’   ‘~/tmp/scratch/RtmpgmYKcb’ ‘~/tmp/scratch/RtmpgxcPf6’   ‘~/tmp/scratch/RtmphBEag7’ ‘~/tmp/scratch/RtmpheATHS’   ‘~/tmp/scratch/RtmpheF7DZ’ ‘~/tmp/scratch/RtmphhP3fg’   ‘~/tmp/scratch/Rtmpi7JAmP’ ‘~/tmp/scratch/Rtmpicltd9’   ‘~/tmp/scratch/RtmpidHQuH’ ‘~/tmp/scratch/RtmpiuezVB’   ‘~/tmp/scratch/Rtmpj3bcqQ’ ‘~/tmp/scratch/Rtmpj68MWi’   ‘~/tmp/scratch/RtmpjNiSLP’ ‘~/tmp/scratch/RtmpjSbj2v’   ‘~/tmp/scratch/RtmpjiEFbl’ ‘~/tmp/scratch/RtmpkJ6lrx’   ‘~/tmp/scratch/RtmpkTqpNh’ ‘~/tmp/scratch/Rtmpko0XqM’   ‘~/tmp/scratch/RtmplfjWuW’ ‘~/tmp/scratch/Rtmpmk0Z8A’   ‘~/tmp/scratch/Rtmpmm9AUY’ ‘~/tmp/scratch/RtmpoG1xnj’   ‘~/tmp/scratch/RtmpoMkMTz’ ‘~/tmp/scratch/RtmpoPtPmH’   ‘~/tmp/scratch/RtmposFRi4’ ‘~/tmp/scratch/RtmpowllCE’   ‘~/tmp/scratch/Rtmpp6nuYz’ ‘~/tmp/scratch/RtmpphNIr2’   ‘~/tmp/scratch/Rtmppj9Uwm’ ‘~/tmp/scratch/RtmppvoRKQ’   ‘~/tmp/scratch/RtmprjPYBN’ ‘~/tmp/scratch/RtmprzOqj9’   ‘~/tmp/scratch/RtmpspdKjc’ ‘~/tmp/scratch/Rtmpsv9Gts’   ‘~/tmp/scratch/RtmpttMczT’ ‘~/tmp/scratch/RtmpuuVycF’   ‘~/tmp/scratch/Rtmpv9e9k2’ ‘~/tmp/scratch/RtmpvCnM9a’   ‘~/tmp/scratch/RtmpwKgBpC’ ‘~/tmp/scratch/RtmpxaqL36’   ‘~/tmp/scratch/RtmpxfYKOV’ ‘~/tmp/scratch/RtmpxpX2aY’   ‘~/tmp/scratch/RtmpyCVuYu’ ‘~/tmp/scratch/RtmpyNSKaU’   ‘~/tmp/scratch/RtmpyVujYk’ ‘~/tmp/scratch/RtmpzfPGEt’   ‘~/tmp/scratch/ccguBypm.s’ ‘~/tmp/scratch/xvfb-run.0sCi8I’   ‘~/tmp/scratch/xvfb-run.3N0N2O’ ‘~/tmp/scratch/xvfb-run.4RDxBK’   ‘~/tmp/scratch/xvfb-run.6xD7A9’ ‘~/tmp/scratch/xvfb-run.77jT5a’   ‘~/tmp/scratch/xvfb-run.8AVgcN’ ‘~/tmp/scratch/xvfb-run.8iU8Oj’   ‘~/tmp/scratch/xvfb-run.8vY2Sh’ ‘~/tmp/scratch/xvfb-run.Av458c’   ‘~/tmp/scratch/xvfb-run.BCSAj1’ ‘~/tmp/scratch/xvfb-run.DYQ1zy’   ‘~/tmp/scratch/xvfb-run.EvN10t’ ‘~/tmp/scratch/xvfb-run.FjgyTt’   ‘~/tmp/scratch/xvfb-run.FrT6eT’ ‘~/tmp/scratch/xvfb-run.Hrylrw’   ‘~/tmp/scratch/xvfb-run.Io344c’ ‘~/tmp/scratch/xvfb-run.KkrEhD’   ‘~/tmp/scratch/xvfb-run.LCsmvc’ ‘~/tmp/scratch/xvfb-run.LIZ0Fp’   ‘~/tmp/scratch/xvfb-run.Ly2sig’ ‘~/tmp/scratch/xvfb-run.LzaUVT’   ‘~/tmp/scratch/xvfb-run.N8Hitm’ ‘~/tmp/scratch/xvfb-run.Ny962o’   ‘~/tmp/scratch/xvfb-run.T80xh2’ ‘~/tmp/scratch/xvfb-run.TZEOL0’   ‘~/tmp/scratch/xvfb-run.V3q3fx’ ‘~/tmp/scratch/xvfb-run.XUB6gg’   ‘~/tmp/scratch/xvfb-run.XZlBKM’ ‘~/tmp/scratch/xvfb-run.Ytaxkn’   ‘~/tmp/scratch/xvfb-run.YvWjcB’ ‘~/tmp/scratch/xvfb-run.ZAHosC’   ‘~/tmp/scratch/xvfb-run.aGDrBF’ ‘~/tmp/scratch/xvfb-run.bnS74h’   ‘~/tmp/scratch/xvfb-run.cMGmvc’ ‘~/tmp/scratch/xvfb-run.dKu2U5’   ‘~/tmp/scratch/xvfb-run.eIyCsr’ ‘~/tmp/scratch/xvfb-run.hoYZjG’   ‘~/tmp/scratch/xvfb-run.iPtlP4’ ‘~/tmp/scratch/xvfb-run.jlI877’   ‘~/tmp/scratch/xvfb-run.lhRXcl’ ‘~/tmp/scratch/xvfb-run.mVLk4k’   ‘~/tmp/scratch/xvfb-run.oI3q2E’ ‘~/tmp/scratch/xvfb-run.pV6vjx’   ‘~/tmp/scratch/xvfb-run.pgr2UH’ ‘~/tmp/scratch/xvfb-run.phf5gG’   ‘~/tmp/scratch/xvfb-run.r2VzRK’ ‘~/tmp/scratch/xvfb-run.rfSCZW’   ‘~/tmp/scratch/xvfb-run.ssQBEz’ ‘~/tmp/scratch/xvfb-run.x84fpt’
• DONE

Status: 2 NOTEs