• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 11:10:36 UTC
• checking for file ‘BED/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘BED’ version ‘1.6.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘BED’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [17s/21s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] OK
• checking PDF version of manual ... [7s/8s] OK
• checking HTML version of manual ... [2s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp04Z653’ ‘~/tmp/scratch/Rtmp0Herx3’   ‘~/tmp/scratch/Rtmp1Gv5vJ’ ‘~/tmp/scratch/Rtmp1X3EGC’   ‘~/tmp/scratch/Rtmp1iVpSn’ ‘~/tmp/scratch/Rtmp3CGTwF’   ‘~/tmp/scratch/Rtmp3CIwqC’ ‘~/tmp/scratch/Rtmp3LTOwP’   ‘~/tmp/scratch/Rtmp3aSmMC’ ‘~/tmp/scratch/Rtmp3nsXMj’   ‘~/tmp/scratch/Rtmp3s4kED’ ‘~/tmp/scratch/Rtmp46foFB’   ‘~/tmp/scratch/Rtmp4a9eUc’ ‘~/tmp/scratch/Rtmp51wXK6’   ‘~/tmp/scratch/Rtmp5HYCwF’ ‘~/tmp/scratch/Rtmp5MFdpZ’   ‘~/tmp/scratch/Rtmp6EYE7z’ ‘~/tmp/scratch/Rtmp6SiEm0’   ‘~/tmp/scratch/Rtmp7E6yR2’ ‘~/tmp/scratch/Rtmp7iErzj’   ‘~/tmp/scratch/Rtmp7jnvuq’ ‘~/tmp/scratch/Rtmp8KLihH’   ‘~/tmp/scratch/Rtmp93VXez’ ‘~/tmp/scratch/Rtmp9ChKVb’   ‘~/tmp/scratch/Rtmp9Lv3yB’ ‘~/tmp/scratch/Rtmp9Uh09U’   ‘~/tmp/scratch/Rtmp9e8092’ ‘~/tmp/scratch/RtmpAlCth1’   ‘~/tmp/scratch/RtmpAuRpVc’ ‘~/tmp/scratch/RtmpBm2eTe’   ‘~/tmp/scratch/RtmpBzCgQ7’ ‘~/tmp/scratch/RtmpC9Wi4c’   ‘~/tmp/scratch/RtmpClxfU0’ ‘~/tmp/scratch/RtmpDdL6tO’   ‘~/tmp/scratch/RtmpEDHAZz’ ‘~/tmp/scratch/RtmpEJ95jR’   ‘~/tmp/scratch/RtmpEgF3ZR’ ‘~/tmp/scratch/RtmpF7ru9y’   ‘~/tmp/scratch/RtmpFBSHsR’ ‘~/tmp/scratch/RtmpFKPpKu’   ‘~/tmp/scratch/RtmpIjKpyK’ ‘~/tmp/scratch/RtmpIoFoDh’   ‘~/tmp/scratch/RtmpIpPXQD’ ‘~/tmp/scratch/RtmpJ0enOE’   ‘~/tmp/scratch/RtmpJ3GBJG’ ‘~/tmp/scratch/RtmpJo5vjs’   ‘~/tmp/scratch/RtmpKrCMrp’ ‘~/tmp/scratch/RtmpLZ50Ho’   ‘~/tmp/scratch/RtmpM7f1z3’ ‘~/tmp/scratch/RtmpMAo0FW’   ‘~/tmp/scratch/RtmpMx0zRK’ ‘~/tmp/scratch/RtmpNashFN’   ‘~/tmp/scratch/RtmpNjfb8V’ ‘~/tmp/scratch/RtmpP8zs8G’   ‘~/tmp/scratch/RtmpPI3nLb’ ‘~/tmp/scratch/RtmpPSQRUw’   ‘~/tmp/scratch/RtmpQPeXx3’ ‘~/tmp/scratch/RtmpQd5yPY’   ‘~/tmp/scratch/RtmpQx1Z3v’ ‘~/tmp/scratch/RtmpRQdst9’   ‘~/tmp/scratch/RtmpSKMvm4’ ‘~/tmp/scratch/RtmpTg5Y5l’   ‘~/tmp/scratch/RtmpU3Nw1B’ ‘~/tmp/scratch/RtmpULMLqp’   ‘~/tmp/scratch/RtmpUUEVEG’ ‘~/tmp/scratch/RtmpUerczQ’   ‘~/tmp/scratch/RtmpVR5yKH’ ‘~/tmp/scratch/RtmpWkJwgx’   ‘~/tmp/scratch/RtmpXBSMKF’ ‘~/tmp/scratch/RtmpXCZV3v’   ‘~/tmp/scratch/RtmpXISNx0’ ‘~/tmp/scratch/RtmpXc9x0V’   ‘~/tmp/scratch/RtmpYcmnYL’ ‘~/tmp/scratch/RtmpZGgJXA’   ‘~/tmp/scratch/Rtmpa848jR’ ‘~/tmp/scratch/RtmpaRZFKA’   ‘~/tmp/scratch/RtmpbNTVlB’ ‘~/tmp/scratch/RtmpbaSw4z’   ‘~/tmp/scratch/Rtmpbks0v5’ ‘~/tmp/scratch/RtmpbpXaZd’   ‘~/tmp/scratch/RtmpcNPYsk’ ‘~/tmp/scratch/Rtmpcyy11B’   ‘~/tmp/scratch/RtmpdJU5k4’ ‘~/tmp/scratch/RtmpdkXpB0’   ‘~/tmp/scratch/Rtmpdx1vDU’ ‘~/tmp/scratch/Rtmpe2sHNf’   ‘~/tmp/scratch/RtmpeCFq4H’ ‘~/tmp/scratch/RtmpeH7R1H’   ‘~/tmp/scratch/RtmpfVNce7’ ‘~/tmp/scratch/RtmpgHT0sD’   ‘~/tmp/scratch/Rtmpi9iTZi’ ‘~/tmp/scratch/RtmpiS6ut5’   ‘~/tmp/scratch/RtmpidsLcd’ ‘~/tmp/scratch/Rtmpj2Aa93’   ‘~/tmp/scratch/RtmpjJhxOL’ ‘~/tmp/scratch/RtmpjU2rmH’   ‘~/tmp/scratch/RtmpjhuR22’ ‘~/tmp/scratch/Rtmpk9gUs2’   ‘~/tmp/scratch/RtmpkdMMoM’ ‘~/tmp/scratch/RtmplqarZI’   ‘~/tmp/scratch/Rtmpm9b6yu’ ‘~/tmp/scratch/RtmpmJbG8c’   ‘~/tmp/scratch/RtmpmfTwVK’ ‘~/tmp/scratch/RtmpmjlUZv’   ‘~/tmp/scratch/RtmpmnwVQY’ ‘~/tmp/scratch/Rtmpnjk5k8’   ‘~/tmp/scratch/RtmpoRxs5D’ ‘~/tmp/scratch/RtmppeiiRn’   ‘~/tmp/scratch/RtmpqGcCMI’ ‘~/tmp/scratch/RtmpqPIdDb’   ‘~/tmp/scratch/RtmpqR0kax’ ‘~/tmp/scratch/RtmpqTwj5Q’   ‘~/tmp/scratch/RtmpraXSgE’ ‘~/tmp/scratch/RtmpriroI3’   ‘~/tmp/scratch/RtmpsANbdo’ ‘~/tmp/scratch/Rtmpsbd6le’   ‘~/tmp/scratch/RtmpswHqmO’ ‘~/tmp/scratch/Rtmpt4M8C0’   ‘~/tmp/scratch/RtmptRjg1V’ ‘~/tmp/scratch/RtmptcrYUO’   ‘~/tmp/scratch/Rtmpts6KjK’ ‘~/tmp/scratch/RtmpuT6COt’   ‘~/tmp/scratch/Rtmpufv6VW’ ‘~/tmp/scratch/RtmpuziKp4’   ‘~/tmp/scratch/RtmpvGSlot’ ‘~/tmp/scratch/RtmpvyrrVs’   ‘~/tmp/scratch/Rtmpw6lcp8’ ‘~/tmp/scratch/RtmpwtQAp0’   ‘~/tmp/scratch/Rtmpwu8yTf’ ‘~/tmp/scratch/Rtmpy3kVzV’   ‘~/tmp/scratch/RtmpykPZ2Y’ ‘~/tmp/scratch/RtmpyzgHtO’   ‘~/tmp/scratch/RtmpzGe0GH’ ‘~/tmp/scratch/xvfb-run.0jEmWl’   ‘~/tmp/scratch/xvfb-run.2pvrCK’ ‘~/tmp/scratch/xvfb-run.3ANLWt’   ‘~/tmp/scratch/xvfb-run.3V6xm8’ ‘~/tmp/scratch/xvfb-run.3aGwys’   ‘~/tmp/scratch/xvfb-run.4v074B’ ‘~/tmp/scratch/xvfb-run.5I7GeZ’   ‘~/tmp/scratch/xvfb-run.6uGxFR’ ‘~/tmp/scratch/xvfb-run.9tL5jU’   ‘~/tmp/scratch/xvfb-run.A5cipb’ ‘~/tmp/scratch/xvfb-run.Bd8nOr’   ‘~/tmp/scratch/xvfb-run.CVOTqp’ ‘~/tmp/scratch/xvfb-run.D4O6ky’   ‘~/tmp/scratch/xvfb-run.DeMPjR’ ‘~/tmp/scratch/xvfb-run.FqxSlW’   ‘~/tmp/scratch/xvfb-run.I34RE6’ ‘~/tmp/scratch/xvfb-run.IEDFSb’   ‘~/tmp/scratch/xvfb-run.JM4DYx’ ‘~/tmp/scratch/xvfb-run.JSpObf’   ‘~/tmp/scratch/xvfb-run.JT8nCI’ ‘~/tmp/scratch/xvfb-run.LBOeau’   ‘~/tmp/scratch/xvfb-run.MVx0zO’ ‘~/tmp/scratch/xvfb-run.O6gQWg’   ‘~/tmp/scratch/xvfb-run.P1DsKs’ ‘~/tmp/scratch/xvfb-run.QBMEMj’   ‘~/tmp/scratch/xvfb-run.QaSZFu’ ‘~/tmp/scratch/xvfb-run.T42htm’   ‘~/tmp/scratch/xvfb-run.TDzg2H’ ‘~/tmp/scratch/xvfb-run.TkjlCe’   ‘~/tmp/scratch/xvfb-run.UFeLrC’ ‘~/tmp/scratch/xvfb-run.Ugs9Ls’   ‘~/tmp/scratch/xvfb-run.VDDFwF’ ‘~/tmp/scratch/xvfb-run.Vs6FxU’   ‘~/tmp/scratch/xvfb-run.ZW8Osb’ ‘~/tmp/scratch/xvfb-run.ak0a4t’   ‘~/tmp/scratch/xvfb-run.cqjmE4’ ‘~/tmp/scratch/xvfb-run.eRmav5’   ‘~/tmp/scratch/xvfb-run.feuDRy’ ‘~/tmp/scratch/xvfb-run.fqe2uh’   ‘~/tmp/scratch/xvfb-run.i5pbiF’ ‘~/tmp/scratch/xvfb-run.jDs3B3’   ‘~/tmp/scratch/xvfb-run.jLFUrx’ ‘~/tmp/scratch/xvfb-run.l3uu7N’   ‘~/tmp/scratch/xvfb-run.lsoZ3f’ ‘~/tmp/scratch/xvfb-run.mjrfuI’   ‘~/tmp/scratch/xvfb-run.nEpQ8E’ ‘~/tmp/scratch/xvfb-run.nSu9k1’   ‘~/tmp/scratch/xvfb-run.oMVxbs’ ‘~/tmp/scratch/xvfb-run.ppXsKa’   ‘~/tmp/scratch/xvfb-run.pw1kpE’ ‘~/tmp/scratch/xvfb-run.qHJOoK’   ‘~/tmp/scratch/xvfb-run.rxNKVj’ ‘~/tmp/scratch/xvfb-run.tZLAWT’   ‘~/tmp/scratch/xvfb-run.w5ixuk’ ‘~/tmp/scratch/xvfb-run.wHMnBM’   ‘~/tmp/scratch/xvfb-run.xZ3DqM’
• DONE

Status: 1 NOTE