Install log for 'BDgraph'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘BDgraph’ ...
** this is package ‘BDgraph’ version ‘2.74’
** package ‘BDgraph’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-16 (Debian 16-20260425-1) 16.0.1 20260425 (prerelease) [gcc-16 r16-8812-gd9c07462a22]’
using C++ compiler: ‘g++-16 (Debian 16-20260425-1) 16.0.1 20260425 (prerelease) [gcc-16 r16-8812-gd9c07462a22]’
make[1]: Entering directory '/tmp/Rtmp8zv3iP/R.INSTALL337e2a1246c890/BDgraph/src'
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c BDgraph_init.c -o BDgraph_init.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c copula.cpp -o copula.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gcgm_DMH.cpp -o gcgm_DMH.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gcgm_bd.cpp -o gcgm_bd.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gcgm_dw_bd.cpp -o gcgm_dw_bd.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ggm_DMH.cpp -o ggm_DMH.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ggm_bd.cpp -o ggm_bd.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ggm_mpl_bd.cpp -o ggm_mpl_bd.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gm_mpl_Hill_Climb.cpp -o gm_mpl_Hill_Climb.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gm_mpl_bd_dis.cpp -o gm_mpl_bd_dis.o
gm_mpl_bd_dis.cpp: In function ‘void dgm_bdmcmc_mpl_binary_map(int*, int*, int*, double*, int*, int*, int*, double*, int*, int*, int*, double*, char**, double*, int*, int*)’:
gm_mpl_bd_dis.cpp:725:16: warning: variable ‘sum_weights’ set but not used [-Wunused-but-set-variable=]
  725 |         double sum_weights = 0.0, weight_C, sum_rates;
      |                ^~~~~~~~~~~
gm_mpl_bd_dis.cpp: In function ‘void dgm_bdmcmc_mpl_binary_map_multi_update(int*, int*, int*, double*, int*, int*, int*, double*, int*, int*, int*, double*, char**, double*, int*, int*, int*, int*)’:
gm_mpl_bd_dis.cpp:1089:16: warning: variable ‘sum_weights’ set but not used [-Wunused-but-set-variable=]
 1089 |         double sum_weights = 0.0, weight_C, sum_rates;
      |                ^~~~~~~~~~~
gm_mpl_bd_dis.cpp: In function ‘void dgm_bdmcmc_mpl_map(int*, int*, int*, double*, int*, int*, int*, int*, double*, int*, int*, int*, double*, char**, double*, int*, int*)’:
gm_mpl_bd_dis.cpp:1621:16: warning: variable ‘sum_weights’ set but not used [-Wunused-but-set-variable=]
 1621 |         double sum_weights = 0.0, weight_C, sum_rates;
      |                ^~~~~~~~~~~
gm_mpl_bd_dis.cpp: In function ‘void dgm_bdmcmc_mpl_map_multi_update(int*, int*, int*, double*, int*, int*, int*, int*, double*, int*, int*, int*, double*, char**, double*, int*, int*, int*, int*)’:
gm_mpl_bd_dis.cpp:1947:16: warning: variable ‘sum_weights’ set but not used [-Wunused-but-set-variable=]
 1947 |         double sum_weights = 0.0, weight_C, sum_rates;
      |                ^~~~~~~~~~~
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gm_rj.cpp -o gm_rj.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c matrix.cpp -o matrix.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c omp_set_num_cores.cpp -o omp_set_num_cores.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rgwish.cpp -o rgwish.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c tgm_bd.cpp -o tgm_bd.o
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o BDgraph.so BDgraph_init.o copula.o gcgm_DMH.o gcgm_bd.o gcgm_dw_bd.o ggm_DMH.o ggm_bd.o ggm_mpl_bd.o gm_mpl_Hill_Climb.o gm_mpl_bd_dis.o gm_rj.o matrix.o omp_set_num_cores.o rgwish.o tgm_bd.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp8zv3iP/R.INSTALL337e2a1246c890/BDgraph/src'
make[1]: Entering directory '/tmp/Rtmp8zv3iP/R.INSTALL337e2a1246c890/BDgraph/src'
make[1]: Leaving directory '/tmp/Rtmp8zv3iP/R.INSTALL337e2a1246c890/BDgraph/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-BDgraph/00new/BDgraph/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BDgraph)