• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 11:08:00 UTC
• checking for file ‘AntAngioCOOL/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘AntAngioCOOL’ version ‘1.2’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Javad Zahiri <zahiri@modares.ac.ir>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = "Babak",                       family = "Khorsand",                       role = "aut",                       email = "khorsand@yahoo.com"),                person(given = "Javad",                       family = "Zahiri",                       role = "cre",                       email = "zahiri@modares.ac.ir")) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘AntAngioCOOL’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/5s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
• checking whether the package can be unloaded cleanly ... [4s/5s] OK
• checking whether the namespace can be loaded with stated dependencies ... [4s/5s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
• checking loading without being on the library search path ... [4s/5s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [39s/42s] OK
• checking Rd files ... [0s/0s] NOTE checkRd: (-1) AntAngioCOOL.Rd:33: Lost braces; missing escapes or markup?     33 | 2- K-mer composition that shows the fraction of all possible subsequences with length k in the given peptide. To compute k-mer composition features, reduced amino acid alphabet that proposed by Zahiri et al (Zahiri et al., 2014) has been exploited: the 20 alphabet of amino acids have been reduced to a new alphabet with size 8 according to 544 physicochemical and biochemical indices that extracted from AAIndex database (Kawashima et al., 2008) (C1={A, E}, C2={I, L, F, M, V}, C3={N, D, T, S}, C4={G}, C5={P}, C6={R, K, Q, H}, C7={Y, W}, C8={C}). We have computed k-mer composition for k=2,3,4 for each peptide.        | ^ checkRd: (-1) AntAngioCOOL.Rd:33: Lost braces; missing escapes or markup?     33 | 2- K-mer composition that shows the fraction of all possible subsequences with length k in the given peptide. To compute k-mer composition features, reduced amino acid alphabet that proposed by Zahiri et al (Zahiri et al., 2014) has been exploited: the 20 alphabet of amino acids have been reduced to a new alphabet with size 8 according to 544 physicochemical and biochemical indices that extracted from AAIndex database (Kawashima et al., 2008) (C1={A, E}, C2={I, L, F, M, V}, C3={N, D, T, S}, C4={G}, C5={P}, C6={R, K, Q, H}, C7={Y, W}, C8={C}). We have computed k-mer composition for k=2,3,4 for each peptide.        | ^ checkRd: (-1) AntAngioCOOL.Rd:33: Lost braces; missing escapes or markup?     33 | 2- K-mer composition that shows the fraction of all possible subsequences with length k in the given peptide. To compute k-mer composition features, reduced amino acid alphabet that proposed by Zahiri et al (Zahiri et al., 2014) has been exploited: the 20 alphabet of amino acids have been reduced to a new alphabet with size 8 according to 544 physicochemical and biochemical indices that extracted from AAIndex database (Kawashima et al., 2008) (C1={A, E}, C2={I, L, F, M, V}, C3={N, D, T, S}, C4={G}, C5={P}, C6={R, K, Q, H}, C7={Y, W}, C8={C}). We have computed k-mer composition for k=2,3,4 for each peptide.        | ^ checkRd: (-1) AntAngioCOOL.Rd:33: Lost braces; missing escapes or markup?     33 | 2- K-mer composition that shows the fraction of all possible subsequences with length k in the given peptide. To compute k-mer composition features, reduced amino acid alphabet that proposed by Zahiri et al (Zahiri et al., 2014) has been exploited: the 20 alphabet of amino acids have been reduced to a new alphabet with size 8 according to 544 physicochemical and biochemical indices that extracted from AAIndex database (Kawashima et al., 2008) (C1={A, E}, C2={I, L, F, M, V}, C3={N, D, T, S}, C4={G}, C5={P}, C6={R, K, Q, H}, C7={Y, W}, C8={C}). We have computed k-mer composition for k=2,3,4 for each peptide.        | ^ checkRd: (-1) AntAngioCOOL.Rd:33: Lost braces; missing escapes or markup?     33 | 2- K-mer composition that shows the fraction of all possible subsequences with length k in the given peptide. To compute k-mer composition features, reduced amino acid alphabet that proposed by Zahiri et al (Zahiri et al., 2014) has been exploited: the 20 alphabet of amino acids have been reduced to a new alphabet with size 8 according to 544 physicochemical and biochemical indices that extracted from AAIndex database (Kawashima et al., 2008) (C1={A, E}, C2={I, L, F, M, V}, C3={N, D, T, S}, C4={G}, C5={P}, C6={R, K, Q, H}, C7={Y, W}, C8={C}). We have computed k-mer composition for k=2,3,4 for each peptide.        | ^ checkRd: (-1) AntAngioCOOL.Rd:33: Lost braces; missing escapes or markup?     33 | 2- K-mer composition that shows the fraction of all possible subsequences with length k in the given peptide. To compute k-mer composition features, reduced amino acid alphabet that proposed by Zahiri et al (Zahiri et al., 2014) has been exploited: the 20 alphabet of amino acids have been reduced to a new alphabet with size 8 according to 544 physicochemical and biochemical indices that extracted from AAIndex database (Kawashima et al., 2008) (C1={A, E}, C2={I, L, F, M, V}, C3={N, D, T, S}, C4={G}, C5={P}, C6={R, K, Q, H}, C7={Y, W}, C8={C}). We have computed k-mer composition for k=2,3,4 for each peptide.        | ^ checkRd: (-1) AntAngioCOOL.Rd:33: Lost braces; missing escapes or markup?     33 | 2- K-mer composition that shows the fraction of all possible subsequences with length k in the given peptide. To compute k-mer composition features, reduced amino acid alphabet that proposed by Zahiri et al (Zahiri et al., 2014) has been exploited: the 20 alphabet of amino acids have been reduced to a new alphabet with size 8 according to 544 physicochemical and biochemical indices that extracted from AAIndex database (Kawashima et al., 2008) (C1={A, E}, C2={I, L, F, M, V}, C3={N, D, T, S}, C4={G}, C5={P}, C6={R, K, Q, H}, C7={Y, W}, C8={C}). We have computed k-mer composition for k=2,3,4 for each peptide.        | ^ checkRd: (-1) AntAngioCOOL.Rd:33: Lost braces; missing escapes or markup?     33 | 2- K-mer composition that shows the fraction of all possible subsequences with length k in the given peptide. To compute k-mer composition features, reduced amino acid alphabet that proposed by Zahiri et al (Zahiri et al., 2014) has been exploited: the 20 alphabet of amino acids have been reduced to a new alphabet with size 8 according to 544 physicochemical and biochemical indices that extracted from AAIndex database (Kawashima et al., 2008) (C1={A, E}, C2={I, L, F, M, V}, C3={N, D, T, S}, C4={G}, C5={P}, C6={R, K, Q, H}, C7={Y, W}, C8={C}). We have computed k-mer composition for k=2,3,4 for each peptide.        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking R/sysdata.rda ... OK
• checking examples ... [10s/12s] OK Examples with CPU (user + system) or elapsed time > 5s               user system elapsed AntAngioCOOL 5.197 0.2 7.119
• checking PDF version of manual ... [3s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0A9l57’ ‘~/tmp/scratch/Rtmp0yACzm’   ‘~/tmp/scratch/Rtmp1pTtLE’ ‘~/tmp/scratch/Rtmp2R7iXe’   ‘~/tmp/scratch/Rtmp3Co59h’ ‘~/tmp/scratch/Rtmp44ZGM8’   ‘~/tmp/scratch/Rtmp4K8233’ ‘~/tmp/scratch/Rtmp4af4Wd’   ‘~/tmp/scratch/Rtmp5Npr9L’ ‘~/tmp/scratch/Rtmp5QmvSq’   ‘~/tmp/scratch/Rtmp5ZMSfB’ ‘~/tmp/scratch/Rtmp6GOyo9’   ‘~/tmp/scratch/Rtmp6X6FGA’ ‘~/tmp/scratch/Rtmp7N2bhP’   ‘~/tmp/scratch/Rtmp8ND5jL’ ‘~/tmp/scratch/Rtmp9bpnWV’   ‘~/tmp/scratch/Rtmp9z9Rz7’ ‘~/tmp/scratch/RtmpA2QpnO’   ‘~/tmp/scratch/RtmpAScNp4’ ‘~/tmp/scratch/RtmpAf7G2e’   ‘~/tmp/scratch/RtmpB7UanX’ ‘~/tmp/scratch/RtmpBQ0Ipr’   ‘~/tmp/scratch/RtmpBXj2eP’ ‘~/tmp/scratch/RtmpBlBheM’   ‘~/tmp/scratch/RtmpCe0vFX’ ‘~/tmp/scratch/RtmpD2R85j’   ‘~/tmp/scratch/RtmpDUryeK’ ‘~/tmp/scratch/RtmpECcJwX’   ‘~/tmp/scratch/RtmpEHtSZH’ ‘~/tmp/scratch/RtmpEe3kkX’   ‘~/tmp/scratch/RtmpEoOYM7’ ‘~/tmp/scratch/RtmpF5t0DG’   ‘~/tmp/scratch/RtmpFKc8KL’ ‘~/tmp/scratch/RtmpHNWPFu’   ‘~/tmp/scratch/RtmpISZ2i4’ ‘~/tmp/scratch/RtmpIhoW5V’   ‘~/tmp/scratch/RtmpIjTzdm’ ‘~/tmp/scratch/RtmpIn723T’   ‘~/tmp/scratch/RtmpIqf0TY’ ‘~/tmp/scratch/RtmpJLUQSX’   ‘~/tmp/scratch/RtmpK9P19O’ ‘~/tmp/scratch/RtmpLIDamD’   ‘~/tmp/scratch/RtmpLM0QG8’ ‘~/tmp/scratch/RtmpM194lE’   ‘~/tmp/scratch/RtmpMLxu4T’ ‘~/tmp/scratch/RtmpMZLhno’   ‘~/tmp/scratch/RtmpN3uOJ7’ ‘~/tmp/scratch/RtmpNw0oBT’   ‘~/tmp/scratch/RtmpO6YF8J’ ‘~/tmp/scratch/RtmpOGjp9z’   ‘~/tmp/scratch/RtmpOIMsnm’ ‘~/tmp/scratch/RtmpPAuBm4’   ‘~/tmp/scratch/RtmpPp7LyQ’ ‘~/tmp/scratch/RtmpQEA845’   ‘~/tmp/scratch/RtmpQEr8FB’ ‘~/tmp/scratch/RtmpQRxB4K’   ‘~/tmp/scratch/RtmpQUPGL2’ ‘~/tmp/scratch/RtmpQai9Bt’   ‘~/tmp/scratch/RtmpR2Oj8F’ ‘~/tmp/scratch/RtmpRd31oR’   ‘~/tmp/scratch/RtmpRdA9PU’ ‘~/tmp/scratch/RtmpRrGKMh’   ‘~/tmp/scratch/RtmpRyMkwF’ ‘~/tmp/scratch/RtmpS1zY05’   ‘~/tmp/scratch/RtmpSICVKH’ ‘~/tmp/scratch/RtmpSP9bO2’   ‘~/tmp/scratch/RtmpSnXkVK’ ‘~/tmp/scratch/RtmpU2HM6h’   ‘~/tmp/scratch/RtmpURegay’ ‘~/tmp/scratch/RtmpUZapsI’   ‘~/tmp/scratch/RtmpUthNPL’ ‘~/tmp/scratch/RtmpVRnNrx’   ‘~/tmp/scratch/RtmpVrvje0’ ‘~/tmp/scratch/RtmpVt34fU’   ‘~/tmp/scratch/RtmpWElHCH’ ‘~/tmp/scratch/RtmpWNvutY’   ‘~/tmp/scratch/RtmpWOW836’ ‘~/tmp/scratch/RtmpWREVDO’   ‘~/tmp/scratch/RtmpXMGkws’ ‘~/tmp/scratch/RtmpXmM5xC’   ‘~/tmp/scratch/RtmpYI6JQx’ ‘~/tmp/scratch/RtmpYvY3iY’   ‘~/tmp/scratch/RtmpZKoVBt’ ‘~/tmp/scratch/RtmpZlrxy2’   ‘~/tmp/scratch/RtmpZnJVlI’ ‘~/tmp/scratch/RtmpaVxHWC’   ‘~/tmp/scratch/Rtmpaecswm’ ‘~/tmp/scratch/RtmpbQ5JCe’   ‘~/tmp/scratch/RtmpbZepmC’ ‘~/tmp/scratch/Rtmpbnwlp3’   ‘~/tmp/scratch/Rtmpbp7qLD’ ‘~/tmp/scratch/RtmpcEZE2b’   ‘~/tmp/scratch/RtmpcMoFQF’ ‘~/tmp/scratch/RtmpcQvZwt’   ‘~/tmp/scratch/Rtmpcedlst’ ‘~/tmp/scratch/RtmpciHYhp’   ‘~/tmp/scratch/RtmpdDrLuA’ ‘~/tmp/scratch/RtmpdJgmQl’   ‘~/tmp/scratch/RtmpeIJ0rL’ ‘~/tmp/scratch/Rtmpea6dAe’   ‘~/tmp/scratch/RtmpegBQFY’ ‘~/tmp/scratch/Rtmpenxhq4’   ‘~/tmp/scratch/RtmpfP9wPK’ ‘~/tmp/scratch/Rtmpfv5UbC’   ‘~/tmp/scratch/RtmpgTNAxs’ ‘~/tmp/scratch/Rtmpgdo1GE’   ‘~/tmp/scratch/Rtmpgxzwsn’ ‘~/tmp/scratch/RtmphAsbAF’   ‘~/tmp/scratch/RtmphHk1am’ ‘~/tmp/scratch/RtmphmzWrZ’   ‘~/tmp/scratch/RtmpiODJkk’ ‘~/tmp/scratch/RtmpiQF0wL’   ‘~/tmp/scratch/Rtmpiy2IFq’ ‘~/tmp/scratch/RtmpjI4sqw’   ‘~/tmp/scratch/Rtmpjpycsk’ ‘~/tmp/scratch/RtmpkbY2xR’   ‘~/tmp/scratch/RtmpkzfOZj’ ‘~/tmp/scratch/RtmplkLRqk’   ‘~/tmp/scratch/Rtmplreta0’ ‘~/tmp/scratch/Rtmpm7cngU’   ‘~/tmp/scratch/RtmpmNZiWJ’ ‘~/tmp/scratch/Rtmpmjxnco’   ‘~/tmp/scratch/RtmpnAAq3a’ ‘~/tmp/scratch/RtmpnpdS1E’   ‘~/tmp/scratch/RtmpobXfqV’ ‘~/tmp/scratch/RtmpofFofH’   ‘~/tmp/scratch/Rtmpoj3ooZ’ ‘~/tmp/scratch/RtmporgFdN’   ‘~/tmp/scratch/RtmpqQEj13’ ‘~/tmp/scratch/RtmpqW4fUq’   ‘~/tmp/scratch/Rtmpqr6Ma3’ ‘~/tmp/scratch/RtmpqywjGk’   ‘~/tmp/scratch/Rtmpr5utS4’ ‘~/tmp/scratch/Rtmpr7DyIg’   ‘~/tmp/scratch/RtmprSX64z’ ‘~/tmp/scratch/RtmpraoAt3’   ‘~/tmp/scratch/RtmprjfNIh’ ‘~/tmp/scratch/Rtmps2Jnpv’   ‘~/tmp/scratch/RtmpsVgGQh’ ‘~/tmp/scratch/RtmpsuJBDh’   ‘~/tmp/scratch/RtmpswhIux’ ‘~/tmp/scratch/RtmptJA5tt’   ‘~/tmp/scratch/RtmptLoVaQ’ ‘~/tmp/scratch/RtmptQE1hy’   ‘~/tmp/scratch/RtmpuB2UbP’ ‘~/tmp/scratch/RtmpusWZFS’   ‘~/tmp/scratch/RtmpvGdIO3’ ‘~/tmp/scratch/RtmpvqV7Fo’   ‘~/tmp/scratch/RtmpvxyHcj’ ‘~/tmp/scratch/Rtmpvz6cEW’   ‘~/tmp/scratch/Rtmpx9sFGm’ ‘~/tmp/scratch/Rtmpy47jEO’   ‘~/tmp/scratch/RtmpyP2jKl’ ‘~/tmp/scratch/RtmpySPcmk’   ‘~/tmp/scratch/RtmpyZ4SGz’ ‘~/tmp/scratch/RtmpytH5pV’   ‘~/tmp/scratch/Rtmpz33Y3z’ ‘~/tmp/scratch/RtmpzNE0Jx’   ‘~/tmp/scratch/xvfb-run.2e3GU9’ ‘~/tmp/scratch/xvfb-run.2eeF7O’   ‘~/tmp/scratch/xvfb-run.3I9NHb’ ‘~/tmp/scratch/xvfb-run.3Jx6u4’   ‘~/tmp/scratch/xvfb-run.3lJ7L7’ ‘~/tmp/scratch/xvfb-run.4Pvk3Y’   ‘~/tmp/scratch/xvfb-run.4xRYby’ ‘~/tmp/scratch/xvfb-run.7eOYVs’   ‘~/tmp/scratch/xvfb-run.8O8HJY’ ‘~/tmp/scratch/xvfb-run.8PKCgd’   ‘~/tmp/scratch/xvfb-run.9ijMFa’ ‘~/tmp/scratch/xvfb-run.ERnCC2’   ‘~/tmp/scratch/xvfb-run.FeEFsn’ ‘~/tmp/scratch/xvfb-run.GKRiag’   ‘~/tmp/scratch/xvfb-run.JZ2Bui’ ‘~/tmp/scratch/xvfb-run.JvfwUm’   ‘~/tmp/scratch/xvfb-run.K3iuvP’ ‘~/tmp/scratch/xvfb-run.LCPURR’   ‘~/tmp/scratch/xvfb-run.LIo5Y6’ ‘~/tmp/scratch/xvfb-run.LJit4H’   ‘~/tmp/scratch/xvfb-run.LrlhqB’ ‘~/tmp/scratch/xvfb-run.Mh0Lxt’   ‘~/tmp/scratch/xvfb-run.O2kS9e’ ‘~/tmp/scratch/xvfb-run.OuO55f’   ‘~/tmp/scratch/xvfb-run.Owc1Jf’ ‘~/tmp/scratch/xvfb-run.QEprxc’   ‘~/tmp/scratch/xvfb-run.QTjwdf’ ‘~/tmp/scratch/xvfb-run.QwT0ic’   ‘~/tmp/scratch/xvfb-run.RkJ2Pz’ ‘~/tmp/scratch/xvfb-run.S5UbWs’   ‘~/tmp/scratch/xvfb-run.SfC0gn’ ‘~/tmp/scratch/xvfb-run.TXUffR’   ‘~/tmp/scratch/xvfb-run.TpE8mM’ ‘~/tmp/scratch/xvfb-run.U8RwXk’   ‘~/tmp/scratch/xvfb-run.V8pwhs’ ‘~/tmp/scratch/xvfb-run.W7dEfU’   ‘~/tmp/scratch/xvfb-run.WB5u6G’ ‘~/tmp/scratch/xvfb-run.XYR2dh’   ‘~/tmp/scratch/xvfb-run.Y1Adpb’ ‘~/tmp/scratch/xvfb-run.Y2dF2D’   ‘~/tmp/scratch/xvfb-run.YB8NGC’ ‘~/tmp/scratch/xvfb-run.YVfbbj’   ‘~/tmp/scratch/xvfb-run.Z4bSnd’ ‘~/tmp/scratch/xvfb-run.bqDlBY’   ‘~/tmp/scratch/xvfb-run.cxn7UV’ ‘~/tmp/scratch/xvfb-run.cydQFu’   ‘~/tmp/scratch/xvfb-run.e2tU9b’ ‘~/tmp/scratch/xvfb-run.eOxNBO’   ‘~/tmp/scratch/xvfb-run.eunW9N’ ‘~/tmp/scratch/xvfb-run.fOHqms’   ‘~/tmp/scratch/xvfb-run.fQKN4B’ ‘~/tmp/scratch/xvfb-run.g9Rb7x’   ‘~/tmp/scratch/xvfb-run.gByHrK’ ‘~/tmp/scratch/xvfb-run.gEegRJ’   ‘~/tmp/scratch/xvfb-run.h2e9fe’ ‘~/tmp/scratch/xvfb-run.hyWJoV’   ‘~/tmp/scratch/xvfb-run.inLwaF’ ‘~/tmp/scratch/xvfb-run.ktZyes’   ‘~/tmp/scratch/xvfb-run.ldC2ec’ ‘~/tmp/scratch/xvfb-run.lsor2Z’   ‘~/tmp/scratch/xvfb-run.nTdc94’ ‘~/tmp/scratch/xvfb-run.pQzDeK’   ‘~/tmp/scratch/xvfb-run.qfMbZ6’ ‘~/tmp/scratch/xvfb-run.rMtjQz’   ‘~/tmp/scratch/xvfb-run.rXBsPT’ ‘~/tmp/scratch/xvfb-run.roIltj’   ‘~/tmp/scratch/xvfb-run.thFDCp’ ‘~/tmp/scratch/xvfb-run.u0yzmF’   ‘~/tmp/scratch/xvfb-run.unI9wi’ ‘~/tmp/scratch/xvfb-run.vNHJ6v’   ‘~/tmp/scratch/xvfb-run.vQdjPq’ ‘~/tmp/scratch/xvfb-run.w0la9Y’   ‘~/tmp/scratch/xvfb-run.xHW7bR’ ‘~/tmp/scratch/xvfb-run.xnEeYE’   ‘~/tmp/scratch/xvfb-run.yNlXEn’ ‘~/tmp/scratch/xvfb-run.yl3gqa’   ‘~/tmp/scratch/xvfb-run.z2aVTL’ ‘~/tmp/scratch/xvfb-run.zBC9v2’
• DONE

Status: 3 NOTEs