• using R Under development (unstable) (2026-08-02 r90338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-03 11:07:53 UTC
• checking for file ‘AnnotationBustR/DESCRIPTION’ ... OK
• this is package ‘AnnotationBustR’ version ‘1.3.0’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Samuel R. Borstein <sam@borstein.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = c("Samuel", "R."),                       family = "Borstein",                       role = c("aut", "cre"),                       email = "sam@borstein.com"),                person(given = "Brian",                       family = "O'Meara",                       role = "aut",                       email = "bomeara@utk.edu")) as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘AnnotationBustR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/6s] NOTE Found calls to structure() using deprecated special names:   AnnotationBustR/tests/testthat/test_AnnotationBust.R (.Names: 1)   AnnotationBustR/tests/testthat/test_FindLongestSeq.R (.Label: 1, .Names: 1) '.Names' should be changed to 'names'. '.Label' should be changed to 'levels'.
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [0s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/27s] OK   Running ‘testthat.R’ [2s/27s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/2s] OK
• checking PDF version of manual ... [3s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp00tk4e’ ‘~/tmp/scratch/Rtmp0ucCiS’   ‘~/tmp/scratch/Rtmp13rIWf’ ‘~/tmp/scratch/Rtmp1ta13m’   ‘~/tmp/scratch/Rtmp2UCrBV’ ‘~/tmp/scratch/Rtmp3v4pEC’   ‘~/tmp/scratch/Rtmp3xaIJd’ ‘~/tmp/scratch/Rtmp4XqJzr’   ‘~/tmp/scratch/Rtmp4sVge5’ ‘~/tmp/scratch/Rtmp59EJV8’   ‘~/tmp/scratch/Rtmp5Vkgyd’ ‘~/tmp/scratch/Rtmp6G7Hcy’   ‘~/tmp/scratch/Rtmp74MyKv’ ‘~/tmp/scratch/Rtmp7HVQTS’   ‘~/tmp/scratch/Rtmp7TQdXK’ ‘~/tmp/scratch/Rtmp7W9Eks’   ‘~/tmp/scratch/Rtmp7eqxw7’ ‘~/tmp/scratch/Rtmp7hlnio’   ‘~/tmp/scratch/Rtmp9D5oDe’ ‘~/tmp/scratch/Rtmp9GURp2’   ‘~/tmp/scratch/Rtmp9q0hi0’ ‘~/tmp/scratch/Rtmp9zQ9hV’   ‘~/tmp/scratch/RtmpAej623’ ‘~/tmp/scratch/RtmpCGj5YF’   ‘~/tmp/scratch/RtmpCtDz7q’ ‘~/tmp/scratch/RtmpD9UZIE’   ‘~/tmp/scratch/RtmpDRLGxm’ ‘~/tmp/scratch/RtmpDzTady’   ‘~/tmp/scratch/RtmpEOLDCe’ ‘~/tmp/scratch/RtmpEe6VUh’   ‘~/tmp/scratch/RtmpFI40mn’ ‘~/tmp/scratch/RtmpFqbnZt’   ‘~/tmp/scratch/RtmpGP6kKp’ ‘~/tmp/scratch/RtmpGa9mE2’   ‘~/tmp/scratch/RtmpGeTsNX’ ‘~/tmp/scratch/RtmpGqezjm’   ‘~/tmp/scratch/RtmpHLDptE’ ‘~/tmp/scratch/RtmpHhBiGe’   ‘~/tmp/scratch/RtmpHx3kT0’ ‘~/tmp/scratch/RtmpJWm1Bu’   ‘~/tmp/scratch/RtmpJffM7K’ ‘~/tmp/scratch/RtmpL7Nbk4’   ‘~/tmp/scratch/RtmpM59Cm3’ ‘~/tmp/scratch/RtmpME30z6’   ‘~/tmp/scratch/RtmpMmCCnJ’ ‘~/tmp/scratch/RtmpMtZiqU’   ‘~/tmp/scratch/RtmpO6bK8y’ ‘~/tmp/scratch/RtmpOCGoIR’   ‘~/tmp/scratch/RtmpOUtUnr’ ‘~/tmp/scratch/RtmpObWkiB’   ‘~/tmp/scratch/RtmpOf7TbV’ ‘~/tmp/scratch/RtmpOgaMvy’   ‘~/tmp/scratch/RtmpP1mGnr’ ‘~/tmp/scratch/RtmpPbZqMR’   ‘~/tmp/scratch/RtmpQ2zJIq’ ‘~/tmp/scratch/RtmpQcBXBH’   ‘~/tmp/scratch/RtmpQfKiSm’ ‘~/tmp/scratch/RtmpR1ne48’   ‘~/tmp/scratch/RtmpRWqTe5’ ‘~/tmp/scratch/RtmpRiBwVA’   ‘~/tmp/scratch/RtmpS8BL9x’ ‘~/tmp/scratch/RtmpTBHF5k’   ‘~/tmp/scratch/RtmpTsiunV’ ‘~/tmp/scratch/RtmpULYZku’   ‘~/tmp/scratch/RtmpURzAFY’ ‘~/tmp/scratch/RtmpUdv7td’   ‘~/tmp/scratch/RtmpUeEFEs’ ‘~/tmp/scratch/RtmpVLBFKq’   ‘~/tmp/scratch/RtmpW4xOZh’ ‘~/tmp/scratch/RtmpWOBU6h’   ‘~/tmp/scratch/RtmpX94AL0’ ‘~/tmp/scratch/RtmpYeYHkt’   ‘~/tmp/scratch/RtmpYuFO5c’ ‘~/tmp/scratch/RtmpaTtj8O’   ‘~/tmp/scratch/RtmpcGfen4’ ‘~/tmp/scratch/Rtmpcn8MNB’   ‘~/tmp/scratch/RtmpdYk0Qm’ ‘~/tmp/scratch/Rtmpdvm9WR’   ‘~/tmp/scratch/RtmpeX3BHj’ ‘~/tmp/scratch/Rtmpevgidu’   ‘~/tmp/scratch/RtmpfTfmQm’ ‘~/tmp/scratch/RtmpfsrzHb’   ‘~/tmp/scratch/RtmpfuFDG3’ ‘~/tmp/scratch/Rtmpg07uJi’   ‘~/tmp/scratch/RtmpgB1Kg1’ ‘~/tmp/scratch/RtmpgRyHo0’   ‘~/tmp/scratch/RtmpgWm1yS’ ‘~/tmp/scratch/RtmphIPUUw’   ‘~/tmp/scratch/RtmphO93u8’ ‘~/tmp/scratch/Rtmpi6tJ0v’   ‘~/tmp/scratch/RtmpjkJTfc’ ‘~/tmp/scratch/RtmpkejCAV’   ‘~/tmp/scratch/RtmpljlHZq’ ‘~/tmp/scratch/RtmplmEw9N’   ‘~/tmp/scratch/Rtmpnl4T4R’ ‘~/tmp/scratch/Rtmpo7cXEa’   ‘~/tmp/scratch/RtmpoD1G7y’ ‘~/tmp/scratch/RtmpoXAy2y’   ‘~/tmp/scratch/Rtmpp9DP4R’ ‘~/tmp/scratch/RtmppbqKL8’   ‘~/tmp/scratch/RtmpqU8aIr’ ‘~/tmp/scratch/RtmprDIZEe’   ‘~/tmp/scratch/RtmprESdTc’ ‘~/tmp/scratch/RtmpsB9XNU’   ‘~/tmp/scratch/RtmpslADZR’ ‘~/tmp/scratch/RtmpvGEuUB’   ‘~/tmp/scratch/RtmpwgE10q’ ‘~/tmp/scratch/RtmpwtDDyO’   ‘~/tmp/scratch/Rtmpxe4ajD’ ‘~/tmp/scratch/Rtmpy6hQMe’   ‘~/tmp/scratch/RtmpyW7VFM’ ‘~/tmp/scratch/RtmpyjpFM9’   ‘~/tmp/scratch/RtmpyjzPWh’ ‘~/tmp/scratch/RtmpzTcK6x’   ‘~/tmp/scratch/RtmpzgcgA8’ ‘~/tmp/scratch/xvfb-run.1SR91m’   ‘~/tmp/scratch/xvfb-run.2jmUcw’ ‘~/tmp/scratch/xvfb-run.5c5BnM’   ‘~/tmp/scratch/xvfb-run.7dsgLJ’ ‘~/tmp/scratch/xvfb-run.7l2OMf’   ‘~/tmp/scratch/xvfb-run.7vGP51’ ‘~/tmp/scratch/xvfb-run.9XdwW1’   ‘~/tmp/scratch/xvfb-run.BFf4gn’ ‘~/tmp/scratch/xvfb-run.CYCypM’   ‘~/tmp/scratch/xvfb-run.FaKede’ ‘~/tmp/scratch/xvfb-run.G2DDyn’   ‘~/tmp/scratch/xvfb-run.J8kRyw’ ‘~/tmp/scratch/xvfb-run.L1oIee’   ‘~/tmp/scratch/xvfb-run.L4qOKC’ ‘~/tmp/scratch/xvfb-run.Llhx6q’   ‘~/tmp/scratch/xvfb-run.O5kLBE’ ‘~/tmp/scratch/xvfb-run.VmCwNh’   ‘~/tmp/scratch/xvfb-run.Vo6jcw’ ‘~/tmp/scratch/xvfb-run.W3Volz’   ‘~/tmp/scratch/xvfb-run.XtjFzx’ ‘~/tmp/scratch/xvfb-run.Zao1vx’   ‘~/tmp/scratch/xvfb-run.bMI0ol’ ‘~/tmp/scratch/xvfb-run.gyCC39’   ‘~/tmp/scratch/xvfb-run.hkbi2H’ ‘~/tmp/scratch/xvfb-run.hxiEHO’   ‘~/tmp/scratch/xvfb-run.iX6njx’ ‘~/tmp/scratch/xvfb-run.if9mQd’   ‘~/tmp/scratch/xvfb-run.jIs8Ja’ ‘~/tmp/scratch/xvfb-run.kF5h1X’   ‘~/tmp/scratch/xvfb-run.m0hKvN’ ‘~/tmp/scratch/xvfb-run.pLL83X’   ‘~/tmp/scratch/xvfb-run.rDJJel’ ‘~/tmp/scratch/xvfb-run.rmTQOM’   ‘~/tmp/scratch/xvfb-run.uXHxFY’ ‘~/tmp/scratch/xvfb-run.ue8iAM’   ‘~/tmp/scratch/xvfb-run.x3fJpS’ ‘~/tmp/scratch/xvfb-run.y3Kswm’   ‘~/tmp/scratch/xvfb-run.zJjmQh’
• DONE

Status: 3 NOTEs