• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 11:06:15 UTC
• checking for file ‘APCalign/DESCRIPTION’ ... OK
• this is package ‘APCalign’ version ‘2.0.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘APCalign’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/11s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [115s/139s] OK   Running ‘testthat.R’ [115s/139s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [4s/6s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0ml1F0’ ‘~/tmp/scratch/Rtmp0pEjdQ’   ‘~/tmp/scratch/Rtmp2qvN5T’ ‘~/tmp/scratch/Rtmp2zIxVG’   ‘~/tmp/scratch/Rtmp3AvoEE’ ‘~/tmp/scratch/Rtmp3MOLrP’   ‘~/tmp/scratch/Rtmp3Rvily’ ‘~/tmp/scratch/Rtmp3SFcI2’   ‘~/tmp/scratch/Rtmp3WEOhp’ ‘~/tmp/scratch/Rtmp3XyxkS’   ‘~/tmp/scratch/Rtmp48mCsm’ ‘~/tmp/scratch/Rtmp49ZDbQ’   ‘~/tmp/scratch/Rtmp536XlE’ ‘~/tmp/scratch/Rtmp5OB4mY’   ‘~/tmp/scratch/Rtmp6Q6BJ8’ ‘~/tmp/scratch/Rtmp6b1Ch0’   ‘~/tmp/scratch/Rtmp6bPW79’ ‘~/tmp/scratch/Rtmp7eIUm9’   ‘~/tmp/scratch/Rtmp7o84dZ’ ‘~/tmp/scratch/Rtmp86V5Av’   ‘~/tmp/scratch/Rtmp8CKfz6’ ‘~/tmp/scratch/Rtmp8eZ9VD’   ‘~/tmp/scratch/Rtmp8kFfV5’ ‘~/tmp/scratch/Rtmp93Huo6’   ‘~/tmp/scratch/Rtmp9HOYaz’ ‘~/tmp/scratch/Rtmp9ZIeVQ’   ‘~/tmp/scratch/Rtmp9xdHX0’ ‘~/tmp/scratch/RtmpAFEdiU’   ‘~/tmp/scratch/RtmpAFYVRH’ ‘~/tmp/scratch/RtmpAHHDAi’   ‘~/tmp/scratch/RtmpAgMtiO’ ‘~/tmp/scratch/RtmpBFQGj4’   ‘~/tmp/scratch/RtmpC5t5z8’ ‘~/tmp/scratch/RtmpCMq9W7’   ‘~/tmp/scratch/RtmpCWVZeK’ ‘~/tmp/scratch/RtmpCrr7Dk’   ‘~/tmp/scratch/RtmpD3J2fU’ ‘~/tmp/scratch/RtmpDOw2sg’   ‘~/tmp/scratch/RtmpEEFptN’ ‘~/tmp/scratch/RtmpELvQT0’   ‘~/tmp/scratch/RtmpEVb8BZ’ ‘~/tmp/scratch/RtmpEcP90h’   ‘~/tmp/scratch/RtmpF7vKGG’ ‘~/tmp/scratch/RtmpFQBwQz’   ‘~/tmp/scratch/RtmpGPH8vA’ ‘~/tmp/scratch/RtmpGZpAb5’   ‘~/tmp/scratch/RtmpGl1Oby’ ‘~/tmp/scratch/RtmpGmOLAU’   ‘~/tmp/scratch/RtmpH1PDwZ’ ‘~/tmp/scratch/RtmpHQIpQJ’   ‘~/tmp/scratch/RtmpHU2Klt’ ‘~/tmp/scratch/RtmpHq5Mke’   ‘~/tmp/scratch/RtmpJlKGGW’ ‘~/tmp/scratch/RtmpJpYgJy’   ‘~/tmp/scratch/RtmpKeD0QT’ ‘~/tmp/scratch/RtmpKmZG8S’   ‘~/tmp/scratch/RtmpL5IK1h’ ‘~/tmp/scratch/RtmpL8SSye’   ‘~/tmp/scratch/RtmpMB9gwm’ ‘~/tmp/scratch/RtmpMCaFNz’   ‘~/tmp/scratch/RtmpMMS6DM’ ‘~/tmp/scratch/RtmpMQUxLv’   ‘~/tmp/scratch/RtmpMkwI8A’ ‘~/tmp/scratch/RtmpMkwX84’   ‘~/tmp/scratch/RtmpNJuVhK’ ‘~/tmp/scratch/RtmpNMCo3c’   ‘~/tmp/scratch/RtmpNkgHv2’ ‘~/tmp/scratch/RtmpOfZNhS’   ‘~/tmp/scratch/RtmpOsysmr’ ‘~/tmp/scratch/RtmpP49MGZ’   ‘~/tmp/scratch/RtmpPJlEzX’ ‘~/tmp/scratch/RtmpPV9gmw’   ‘~/tmp/scratch/RtmpPdiRQJ’ ‘~/tmp/scratch/RtmpRAB8GD’   ‘~/tmp/scratch/RtmpS1fSCG’ ‘~/tmp/scratch/RtmpUCPAwy’   ‘~/tmp/scratch/RtmpUEuXoI’ ‘~/tmp/scratch/RtmpUKc6si’   ‘~/tmp/scratch/RtmpUM1q1b’ ‘~/tmp/scratch/RtmpUqPZU5’   ‘~/tmp/scratch/RtmpVBZLH8’ ‘~/tmp/scratch/RtmpXquAo2’   ‘~/tmp/scratch/RtmpY8jZY3’ ‘~/tmp/scratch/RtmpYBrf8T’   ‘~/tmp/scratch/RtmpYeoR2l’ ‘~/tmp/scratch/RtmpYwDVSk’   ‘~/tmp/scratch/RtmpaEEK91’ ‘~/tmp/scratch/RtmpaTY7Nc’   ‘~/tmp/scratch/RtmpaqYSJK’ ‘~/tmp/scratch/RtmpbFUbrT’   ‘~/tmp/scratch/RtmpbggINd’ ‘~/tmp/scratch/Rtmpbk8Cbz’   ‘~/tmp/scratch/RtmpbtQqgI’ ‘~/tmp/scratch/Rtmpc5rtp6’   ‘~/tmp/scratch/RtmpcMJm7K’ ‘~/tmp/scratch/RtmpcmP6Al’   ‘~/tmp/scratch/RtmpcwPCiT’ ‘~/tmp/scratch/Rtmpcx4FhE’   ‘~/tmp/scratch/Rtmpd9AVVV’ ‘~/tmp/scratch/Rtmpdnd4hv’   ‘~/tmp/scratch/RtmpeDNklp’ ‘~/tmp/scratch/RtmpeHk511’   ‘~/tmp/scratch/RtmpfonCEy’ ‘~/tmp/scratch/Rtmpg2uy11’   ‘~/tmp/scratch/RtmpgMiBb5’ ‘~/tmp/scratch/RtmpgfxTUi’   ‘~/tmp/scratch/Rtmpghcxzg’ ‘~/tmp/scratch/Rtmph5zuiz’   ‘~/tmp/scratch/RtmphD3jhY’ ‘~/tmp/scratch/RtmphH5ZLT’   ‘~/tmp/scratch/RtmphPA80k’ ‘~/tmp/scratch/Rtmphbn0Ao’   ‘~/tmp/scratch/Rtmphee0Mr’ ‘~/tmp/scratch/RtmphuOpwt’   ‘~/tmp/scratch/Rtmpifk6MJ’ ‘~/tmp/scratch/RtmpivNa6b’   ‘~/tmp/scratch/Rtmpj4Qtph’ ‘~/tmp/scratch/Rtmpj9EvuV’   ‘~/tmp/scratch/RtmpjhNC1x’ ‘~/tmp/scratch/RtmpjqaChr’   ‘~/tmp/scratch/RtmpkAoeQT’ ‘~/tmp/scratch/RtmpkbrrNa’   ‘~/tmp/scratch/RtmpkioQmV’ ‘~/tmp/scratch/Rtmpkln87m’   ‘~/tmp/scratch/RtmpkrofLl’ ‘~/tmp/scratch/RtmplHDMgA’   ‘~/tmp/scratch/RtmplZuZbz’ ‘~/tmp/scratch/Rtmpma5P9I’   ‘~/tmp/scratch/RtmpmbPwXh’ ‘~/tmp/scratch/RtmpmbU1Zk’   ‘~/tmp/scratch/Rtmpmi01K3’ ‘~/tmp/scratch/Rtmpn50xzF’   ‘~/tmp/scratch/Rtmpn5t3bE’ ‘~/tmp/scratch/RtmpnsPtTQ’   ‘~/tmp/scratch/Rtmpnw4jwJ’ ‘~/tmp/scratch/Rtmpo7CHNv’   ‘~/tmp/scratch/Rtmpo8aKIi’ ‘~/tmp/scratch/RtmpoAkiBq’   ‘~/tmp/scratch/RtmpoOENJp’ ‘~/tmp/scratch/Rtmpoob4Lw’   ‘~/tmp/scratch/Rtmpq3JSg1’ ‘~/tmp/scratch/Rtmpq9yhg3’   ‘~/tmp/scratch/RtmpqHlfWU’ ‘~/tmp/scratch/RtmpqQgywk’   ‘~/tmp/scratch/RtmpqfCkbD’ ‘~/tmp/scratch/RtmpqiQ0Xy’   ‘~/tmp/scratch/Rtmpqq3nwU’ ‘~/tmp/scratch/Rtmpr6Bs2H’   ‘~/tmp/scratch/RtmprqZpp6’ ‘~/tmp/scratch/RtmptQZMqy’   ‘~/tmp/scratch/Rtmpu3XPQx’ ‘~/tmp/scratch/Rtmpulr4uT’   ‘~/tmp/scratch/Rtmpvl4yWo’ ‘~/tmp/scratch/RtmpwPwxPx’   ‘~/tmp/scratch/RtmpwXyFrt’ ‘~/tmp/scratch/RtmpxAi9br’   ‘~/tmp/scratch/RtmpxW5CkO’ ‘~/tmp/scratch/RtmpxYNwIo’   ‘~/tmp/scratch/RtmpxhJW3F’ ‘~/tmp/scratch/RtmpxooIF1’   ‘~/tmp/scratch/RtmpyS1Aer’ ‘~/tmp/scratch/RtmpydYNul’   ‘~/tmp/scratch/RtmpyjZyy9’ ‘~/tmp/scratch/Rtmpys4lqP’   ‘~/tmp/scratch/Rtmpyu4XjJ’ ‘~/tmp/scratch/Rtmpyzumvn’   ‘~/tmp/scratch/Rtmpz8fbVh’ ‘~/tmp/scratch/xvfb-run.0yr5VR’   ‘~/tmp/scratch/xvfb-run.1RnOO7’ ‘~/tmp/scratch/xvfb-run.1Z6GQm’   ‘~/tmp/scratch/xvfb-run.24EkMo’ ‘~/tmp/scratch/xvfb-run.29CaMS’   ‘~/tmp/scratch/xvfb-run.2Gp4hF’ ‘~/tmp/scratch/xvfb-run.2WiSoK’   ‘~/tmp/scratch/xvfb-run.4sjzDY’ ‘~/tmp/scratch/xvfb-run.51WJ4K’   ‘~/tmp/scratch/xvfb-run.5cDBBH’ ‘~/tmp/scratch/xvfb-run.6D3yBz’   ‘~/tmp/scratch/xvfb-run.7BSPiG’ ‘~/tmp/scratch/xvfb-run.7tGzDr’   ‘~/tmp/scratch/xvfb-run.8kbTvd’ ‘~/tmp/scratch/xvfb-run.8oxnVv’   ‘~/tmp/scratch/xvfb-run.9MUhQH’ ‘~/tmp/scratch/xvfb-run.AjjpJO’   ‘~/tmp/scratch/xvfb-run.BFP2tf’ ‘~/tmp/scratch/xvfb-run.CbN0H2’   ‘~/tmp/scratch/xvfb-run.CtcQC3’ ‘~/tmp/scratch/xvfb-run.DFJjzO’   ‘~/tmp/scratch/xvfb-run.DFSu6z’ ‘~/tmp/scratch/xvfb-run.Dbe3sG’   ‘~/tmp/scratch/xvfb-run.EjXFb3’ ‘~/tmp/scratch/xvfb-run.Ev2q79’   ‘~/tmp/scratch/xvfb-run.F4GCCg’ ‘~/tmp/scratch/xvfb-run.GCiyGR’   ‘~/tmp/scratch/xvfb-run.HFJskR’ ‘~/tmp/scratch/xvfb-run.HfIzlo’   ‘~/tmp/scratch/xvfb-run.LA71kr’ ‘~/tmp/scratch/xvfb-run.LBl54E’   ‘~/tmp/scratch/xvfb-run.MK4S25’ ‘~/tmp/scratch/xvfb-run.NJYIVo’   ‘~/tmp/scratch/xvfb-run.NV8Wyi’ ‘~/tmp/scratch/xvfb-run.OFDv4F’   ‘~/tmp/scratch/xvfb-run.Q9029H’ ‘~/tmp/scratch/xvfb-run.QMWDY1’   ‘~/tmp/scratch/xvfb-run.QMe8Le’ ‘~/tmp/scratch/xvfb-run.RIKR6w’   ‘~/tmp/scratch/xvfb-run.RTbfWz’ ‘~/tmp/scratch/xvfb-run.Uu8OnW’   ‘~/tmp/scratch/xvfb-run.W28sjG’ ‘~/tmp/scratch/xvfb-run.WDmwLQ’   ‘~/tmp/scratch/xvfb-run.XRmyqH’ ‘~/tmp/scratch/xvfb-run.XrpdGP’   ‘~/tmp/scratch/xvfb-run.YfZqP3’ ‘~/tmp/scratch/xvfb-run.YqcQnl’   ‘~/tmp/scratch/xvfb-run.ZHI1hY’ ‘~/tmp/scratch/xvfb-run.a2Uia5’   ‘~/tmp/scratch/xvfb-run.aJWj9F’ ‘~/tmp/scratch/xvfb-run.aN62fw’   ‘~/tmp/scratch/xvfb-run.aOiniP’ ‘~/tmp/scratch/xvfb-run.aVYgEr’   ‘~/tmp/scratch/xvfb-run.bf087M’ ‘~/tmp/scratch/xvfb-run.bt7H9l’   ‘~/tmp/scratch/xvfb-run.bvLrhS’ ‘~/tmp/scratch/xvfb-run.gMQVXI’   ‘~/tmp/scratch/xvfb-run.i2Y2ry’ ‘~/tmp/scratch/xvfb-run.nyQvvy’   ‘~/tmp/scratch/xvfb-run.qSW2i4’ ‘~/tmp/scratch/xvfb-run.qTCKEu’   ‘~/tmp/scratch/xvfb-run.qXodso’ ‘~/tmp/scratch/xvfb-run.qdVciF’   ‘~/tmp/scratch/xvfb-run.rICMdP’ ‘~/tmp/scratch/xvfb-run.tUP55h’   ‘~/tmp/scratch/xvfb-run.tu8Cmq’ ‘~/tmp/scratch/xvfb-run.u7MxA8’   ‘~/tmp/scratch/xvfb-run.ugqyp6’ ‘~/tmp/scratch/xvfb-run.v9Lo7y’   ‘~/tmp/scratch/xvfb-run.xRNNCv’ ‘~/tmp/scratch/xvfb-run.y1CbvK’   ‘~/tmp/scratch/xvfb-run.y6H2Kp’ ‘~/tmp/scratch/xvfb-run.yQwFu2’   ‘~/tmp/scratch/xvfb-run.z22M7f’ ‘~/tmp/scratch/xvfb-run.z6AC1O’   ‘~/tmp/scratch/xvfb-run.zhiWmo’
• DONE

Status: 1 NOTE