• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 11:05:19 UTC
• checking for file ‘AMModels/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘AMModels’ version ‘0.1.4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Jon Katz <jonkatz4@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = "Jon",                       family = "Katz",                       role = c("aut", "cre"),                       email = "jonkatz4@gmail.com"),                person(given = "Therese",                       family = "Donovan",                       role = "aut",                       email = "tdonovan@uvm.edu")) as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Found the following (possibly) invalid URLs:   URL:     From: inst/doc/journal.pone.0188966.pdf     Message: Empty URL Found the following \keyword or \concept entries which likely give several index terms:   File ‘simCovariate.Rd’:     \keyword{datagen,}
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘AMModels’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/8s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/2s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/1s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0aCju4’ ‘~/tmp/scratch/Rtmp0siWji’   ‘~/tmp/scratch/Rtmp1bVMVk’ ‘~/tmp/scratch/Rtmp29l7po’   ‘~/tmp/scratch/Rtmp2kYqId’ ‘~/tmp/scratch/Rtmp2tqBYH’   ‘~/tmp/scratch/Rtmp3EuCV4’ ‘~/tmp/scratch/Rtmp3JEJtM’   ‘~/tmp/scratch/Rtmp4DcaBW’ ‘~/tmp/scratch/Rtmp4XcglM’   ‘~/tmp/scratch/Rtmp4x1AWk’ ‘~/tmp/scratch/Rtmp5gWY36’   ‘~/tmp/scratch/Rtmp5onL1v’ ‘~/tmp/scratch/Rtmp6Xx91E’   ‘~/tmp/scratch/Rtmp6ixIek’ ‘~/tmp/scratch/Rtmp6l5I7q’   ‘~/tmp/scratch/Rtmp7GCi6g’ ‘~/tmp/scratch/Rtmp7VYySK’   ‘~/tmp/scratch/Rtmp88VvDl’ ‘~/tmp/scratch/Rtmp8VJSoS’   ‘~/tmp/scratch/Rtmp8ahU0D’ ‘~/tmp/scratch/Rtmp8woQcg’   ‘~/tmp/scratch/Rtmp9HQyiC’ ‘~/tmp/scratch/RtmpA3bAOj’   ‘~/tmp/scratch/RtmpAtJwHc’ ‘~/tmp/scratch/RtmpB3aMWf’   ‘~/tmp/scratch/RtmpBUsTx8’ ‘~/tmp/scratch/RtmpBpRy3w’   ‘~/tmp/scratch/RtmpC4pKL2’ ‘~/tmp/scratch/RtmpC8Pm8C’   ‘~/tmp/scratch/RtmpDYPKfR’ ‘~/tmp/scratch/RtmpDytegF’   ‘~/tmp/scratch/RtmpEXm1U1’ ‘~/tmp/scratch/RtmpEb1mSG’   ‘~/tmp/scratch/RtmpEhz8zW’ ‘~/tmp/scratch/RtmpEjuyEw’   ‘~/tmp/scratch/RtmpGCgk6C’ ‘~/tmp/scratch/RtmpGOCbO4’   ‘~/tmp/scratch/RtmpGx7z25’ ‘~/tmp/scratch/RtmpH1f19C’   ‘~/tmp/scratch/RtmpIHKsev’ ‘~/tmp/scratch/RtmpISsZMb’   ‘~/tmp/scratch/RtmpIfXIof’ ‘~/tmp/scratch/RtmpIkKyFz’   ‘~/tmp/scratch/RtmpIxEUOI’ ‘~/tmp/scratch/RtmpJWlh3W’   ‘~/tmp/scratch/RtmpKK0GPA’ ‘~/tmp/scratch/RtmpL05j2B’   ‘~/tmp/scratch/RtmpL24U0h’ ‘~/tmp/scratch/RtmpLMXFLD’   ‘~/tmp/scratch/RtmpLbo6ae’ ‘~/tmp/scratch/RtmpNxu1XG’   ‘~/tmp/scratch/RtmpPOcfUa’ ‘~/tmp/scratch/RtmpQ4vwSy’   ‘~/tmp/scratch/RtmpQVz4nF’ ‘~/tmp/scratch/RtmpQrdYep’   ‘~/tmp/scratch/RtmpSGOdDk’ ‘~/tmp/scratch/RtmpSl4gmE’   ‘~/tmp/scratch/RtmpTn48nz’ ‘~/tmp/scratch/RtmpTwq7sB’   ‘~/tmp/scratch/RtmpUfFSOY’ ‘~/tmp/scratch/RtmpUoS20V’   ‘~/tmp/scratch/RtmpWpG1yr’ ‘~/tmp/scratch/RtmpWzJLWa’   ‘~/tmp/scratch/RtmpXIP6Uz’ ‘~/tmp/scratch/RtmpXJdmm2’   ‘~/tmp/scratch/RtmpXjaXeY’ ‘~/tmp/scratch/RtmpYMB3eW’   ‘~/tmp/scratch/RtmpZTdjw5’ ‘~/tmp/scratch/RtmpaWLwnc’   ‘~/tmp/scratch/RtmpabPRN8’ ‘~/tmp/scratch/RtmpbuoooF’   ‘~/tmp/scratch/RtmpcCV0FY’ ‘~/tmp/scratch/RtmpcuqFyI’   ‘~/tmp/scratch/Rtmpe0X9S8’ ‘~/tmp/scratch/RtmpeBauro’   ‘~/tmp/scratch/RtmpeN7lhi’ ‘~/tmp/scratch/RtmpfD00lV’   ‘~/tmp/scratch/RtmpfYFUQu’ ‘~/tmp/scratch/RtmpfpB5si’   ‘~/tmp/scratch/RtmpiC54Zd’ ‘~/tmp/scratch/RtmpituNZM’   ‘~/tmp/scratch/RtmpjJutLe’ ‘~/tmp/scratch/RtmpjUMclA’   ‘~/tmp/scratch/Rtmplp55zY’ ‘~/tmp/scratch/RtmplyIi4V’   ‘~/tmp/scratch/Rtmpm447Z6’ ‘~/tmp/scratch/RtmpmOEU4n’   ‘~/tmp/scratch/RtmpmUfnHW’ ‘~/tmp/scratch/RtmpmWgvgE’   ‘~/tmp/scratch/RtmpmkirX9’ ‘~/tmp/scratch/RtmpnKwKqi’   ‘~/tmp/scratch/RtmpnbhCBM’ ‘~/tmp/scratch/RtmpoACK54’   ‘~/tmp/scratch/RtmpocPiX6’ ‘~/tmp/scratch/RtmposmFLn’   ‘~/tmp/scratch/Rtmpp4xaWt’ ‘~/tmp/scratch/RtmpphdF36’   ‘~/tmp/scratch/RtmpqZVQyZ’ ‘~/tmp/scratch/Rtmpqh3c1R’   ‘~/tmp/scratch/RtmpqldDwS’ ‘~/tmp/scratch/RtmpsDAKaC’   ‘~/tmp/scratch/RtmpsMHw0X’ ‘~/tmp/scratch/RtmpsZLvPK’   ‘~/tmp/scratch/Rtmpst3a6o’ ‘~/tmp/scratch/RtmptDdTIi’   ‘~/tmp/scratch/RtmptR4rGc’ ‘~/tmp/scratch/Rtmpu10wCE’   ‘~/tmp/scratch/RtmpuNUp4f’ ‘~/tmp/scratch/RtmpueTT5L’   ‘~/tmp/scratch/RtmpuljuKV’ ‘~/tmp/scratch/RtmpurTn5z’   ‘~/tmp/scratch/RtmpuzoMWj’ ‘~/tmp/scratch/Rtmpv2oqEq’   ‘~/tmp/scratch/RtmpvBRdzx’ ‘~/tmp/scratch/Rtmpvjx5Q1’   ‘~/tmp/scratch/RtmpwTDIRC’ ‘~/tmp/scratch/RtmpxCEnHq’   ‘~/tmp/scratch/Rtmpy7APLB’ ‘~/tmp/scratch/RtmpyfLAQs’   ‘~/tmp/scratch/RtmpyvIaw4’ ‘~/tmp/scratch/RtmpzcG2H7’   ‘~/tmp/scratch/RtmpzxxVGf’ ‘~/tmp/scratch/xvfb-run.2BK1Xy’   ‘~/tmp/scratch/xvfb-run.2RTxhL’ ‘~/tmp/scratch/xvfb-run.3PVK3b’   ‘~/tmp/scratch/xvfb-run.4PKCBA’ ‘~/tmp/scratch/xvfb-run.4xF5u4’   ‘~/tmp/scratch/xvfb-run.7s7YvP’ ‘~/tmp/scratch/xvfb-run.BcKsA9’   ‘~/tmp/scratch/xvfb-run.BcRnR0’ ‘~/tmp/scratch/xvfb-run.DTWGFY’   ‘~/tmp/scratch/xvfb-run.DVL3LY’ ‘~/tmp/scratch/xvfb-run.DbWRz8’   ‘~/tmp/scratch/xvfb-run.FTz6ZR’ ‘~/tmp/scratch/xvfb-run.JPFJUg’   ‘~/tmp/scratch/xvfb-run.Lm7bXe’ ‘~/tmp/scratch/xvfb-run.M0NvEd’   ‘~/tmp/scratch/xvfb-run.MKyYDN’ ‘~/tmp/scratch/xvfb-run.NJaAGu’   ‘~/tmp/scratch/xvfb-run.OeLuP3’ ‘~/tmp/scratch/xvfb-run.S9JDOO’   ‘~/tmp/scratch/xvfb-run.SDZMrw’ ‘~/tmp/scratch/xvfb-run.TLl5zf’   ‘~/tmp/scratch/xvfb-run.W8kmIt’ ‘~/tmp/scratch/xvfb-run.WMDBD3’   ‘~/tmp/scratch/xvfb-run.YM70Oi’ ‘~/tmp/scratch/xvfb-run.YpWiRa’   ‘~/tmp/scratch/xvfb-run.Z5zRge’ ‘~/tmp/scratch/xvfb-run.bQ3wQy’   ‘~/tmp/scratch/xvfb-run.cBiPfs’ ‘~/tmp/scratch/xvfb-run.cwApey’   ‘~/tmp/scratch/xvfb-run.eH1NM6’ ‘~/tmp/scratch/xvfb-run.iEua98’   ‘~/tmp/scratch/xvfb-run.igPGWV’ ‘~/tmp/scratch/xvfb-run.kG2yAp’   ‘~/tmp/scratch/xvfb-run.kcfcRG’ ‘~/tmp/scratch/xvfb-run.lsX5JM’   ‘~/tmp/scratch/xvfb-run.qRBr4L’ ‘~/tmp/scratch/xvfb-run.qxcyQQ’   ‘~/tmp/scratch/xvfb-run.rni1QF’ ‘~/tmp/scratch/xvfb-run.utTY4Q’   ‘~/tmp/scratch/xvfb-run.vBZCgG’ ‘~/tmp/scratch/xvfb-run.vGv0Mh’   ‘~/tmp/scratch/xvfb-run.vX3OsH’ ‘~/tmp/scratch/xvfb-run.wdIM3v’   ‘~/tmp/scratch/xvfb-run.x5d3C4’ ‘~/tmp/scratch/xvfb-run.xC237Z’   ‘~/tmp/scratch/xvfb-run.zAeOxh’
• DONE

Status: 2 NOTEs