• using R Under development (unstable) (2025-10-28 r88973)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (7)     Debian flang-new version 19.1.7 (7)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘vcvComp/DESCRIPTION’ ... OK
• this is package ‘vcvComp’ version ‘1.0.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Anne Le Maitre <anne.le.maitre@univie.ac.at>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Found the following URLs which should use \doi (with the DOI name only):   File ‘Tropheus.IK.coord.Rd’:     https://doi.org/10.1038/hdy.2013.78     https://doi.org/10.5061/dryad.fc02f   File ‘Tropheus.Rd’:     https://doi.org/10.5061/dryad.fc02f     https://doi.org/10.1038/hdy.2013.78   File ‘relative.eigen.Rd’:     https://doi.org/10.1007/s11692-013-9260-5
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘vcvComp’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/7s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) Tropheus.IK.coord.Rd:23: Lost braces; missing escapes or markup?     23 | \item \strong{List_TropheusData_ID} {Specimen ID}        | ^ checkRd: (-1) Tropheus.IK.coord.Rd:24: Lost braces; missing escapes or markup?     24 | \item \strong{Extractionnr.} {Extraction number for genomic DNA}        | ^ checkRd: (-1) Tropheus.IK.coord.Rd:25: Lost braces; missing escapes or markup?     25 | \item \strong{G} {Group number}        | ^ checkRd: (-1) Tropheus.IK.coord.Rd:26: Lost braces; missing escapes or markup?     26 | \item \strong{POP.ID} {Population Id}        | ^ checkRd: (-1) Tropheus.IK.coord.Rd:27: Lost braces; missing escapes or markup?     27 | \item \strong{Sex} {Sex}        | ^ checkRd: (-1) Tropheus.IK.coord.Rd:28: Lost braces; missing escapes or markup?     28 | \item \strong{Allo.Symp} {Allopatric or sympatric population}        | ^ checkRd: (-1) Tropheus.IK.coord.Rd:29: Lost braces; missing escapes or markup?     29 | \item \strong{X1 ... Y19} {Procrustes coordinates of 19 landmarks}        | ^ checkRd: (-1) Tropheus.IK.coord.Rd:30: Lost braces; missing escapes or markup?     30 | \item \strong{Pzep3_1 ... UME003_2} {Genotype for 6 microsatellite markers}        | ^ checkRd: (-1) Tropheus.Rd:25: Lost braces; missing escapes or markup?     25 | \item \strong{List_TropheusData_ID} {Specimen ID}        | ^ checkRd: (-1) Tropheus.Rd:26: Lost braces; missing escapes or markup?     26 | \item \strong{Extractionnr.} {Extraction number for genomic DNA}        | ^ checkRd: (-1) Tropheus.Rd:27: Lost braces; missing escapes or markup?     27 | \item \strong{G} {Group number}        | ^ checkRd: (-1) Tropheus.Rd:28: Lost braces; missing escapes or markup?     28 | \item \strong{POP.ID} {Population Id}        | ^ checkRd: (-1) Tropheus.Rd:29: Lost braces; missing escapes or markup?     29 | \item \strong{Sex} {Sex}        | ^ checkRd: (-1) Tropheus.Rd:30: Lost braces; missing escapes or markup?     30 | \item \strong{Allo.Symp} {Allopatric or sympatric population}        | ^ checkRd: (-1) Tropheus.Rd:31: Lost braces; missing escapes or markup?     31 | \item \strong{X1 ... Y19} {Cartesian coordinates of 19 landmarks}        | ^ checkRd: (-1) Tropheus.Rd:32: Lost braces; missing escapes or markup?     32 | \item \strong{Pzep3_1 ... UME003_2} {Genotype for 6 microsatellite markers}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/2s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [11s/15s] OK
• checking PDF version of manual ... [6s/7s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs