• using R Under development (unstable) (2025-10-19 r88945)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (7)     Debian flang-new version 19.1.7 (7)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘ushr/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ushr’ version ‘0.2.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Sinead E. Morris <sinead.morris@columbia.edu>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘ushr’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/17s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [15s/21s] OK Examples with CPU (user + system) or elapsed time > 5s             user system elapsed plot_pairs 4.514 0.029 5.466 plot_data 3.136 0.172 5.009
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [4s/5s] OK   Running ‘testthat.R’ [4s/5s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [22s/28s] OK
• checking PDF version of manual ... [7s/9s] OK
• checking HTML version of manual ... [1s/2s] NOTE Found the following HTML validation problems: add_noise.html:50:1 (add_noise.Rd:12): Warning: missing </ul> before </div> biphasic_root.html:54:1 (biphasic_root.Rd:14): Warning: missing </ul> before </div> fit_model.html:88:1 (fit_model.Rd:32): Warning: missing </ul> before </div> fit_model_triphasic.html:80:1 (fit_model_triphasic.Rd:28): Warning: missing </ul> before </div> get_CI.html:46:1 (get_CI.Rd:10): Warning: missing </ul> before </div> get_CItable.html:58:1 (get_CItable.Rd:16): Warning: missing </ul> before </div> get_error.html:67:1 (get_error.Rd:21): Warning: missing </ul> before </div> get_error_triphasic.html:63:1 (get_error_triphasic.Rd:19): Warning: missing </ul> before </div> get_nonparametricTTS.html:58:1 (get_nonparametricTTS.Rd:16): Warning: missing </ul> before </div> get_optim_fit.html:77:1 (get_optim_fit.Rd:27): Warning: missing </ul> before </div> get_optim_fit_triphasic.html:72:1 (get_optim_fit_triphasic.Rd:24): Warning: missing </ul> before </div> get_parametricTTS.html:58:1 (get_parametricTTS.Rd:16): Warning: missing </ul> before </div> get_params.html:67:1 (get_params.Rd:21): Warning: missing </ul> before </div> get_plottheme.html:46:1 (get_plottheme.Rd:10): Warning: missing </ul> before </div> get_transformed_params.html:50:1 (get_transformed_params.Rd:12): Warning: missing </ul> before </div> remove_vl0.html:54:1 (remove_vl0.Rd:14): Warning: missing </ul> before </div> simulate_time.html:62:1 (simulate_time.Rd:18): Warning: missing </ul> before </div> simulate_time_fixed.html:62:1 (simulate_time_fixed.Rd:18): Warning: missing </ul> before </div> simulate_vl.html:54:1 (simulate_vl.Rd:14): Warning: missing </ul> before </div> single_root.html:54:1 (single_root.Rd:14): Warning: missing </ul> before </div> switch_params.html:46:1 (switch_params.Rd:10): Warning: missing </ul> before </div> switch_simulated_params.html:46:1 (switch_simulated_params.Rd:10): Warning: missing </ul> before </div> transformVL.html:46:1 (transformVL.Rd:10): Warning: missing </ul> before </div> tri_switch_params.html:46:1 (tri_switch_params.Rd:10): Warning: missing </ul> before </div> triphasic_root.html:54:1 (triphasic_root.Rd:14): Warning: missing </ul> before </div>
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs