- using R Under development (unstable) (2022-06-18 r82503)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: ISO8859-15
- checking for file 'updog/DESCRIPTION' ... OK
- this is package 'updog' version '2.1.2'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package 'updog' can be installed ... WARNING
Found the following significant warnings:
betabinom.cpp:144:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
betabinom.cpp:147:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
betabinom.cpp:150:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
betabinom.cpp:153:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
betabinom.cpp:267:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
betabinom.cpp:270:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
betabinom.cpp:273:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
betabinom.cpp:276:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
betabinom.cpp:385:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
betabinom.cpp:388:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
betabinom.cpp:391:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
betabinom.cpp:460:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
betabinom.cpp:463:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
betabinom.cpp:466:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
gradients.cpp:409:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
objective.cpp:463:11: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
util_funs.cpp:46:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
util_funs.cpp:110:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
util_funs.cpp:113:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/updog-00install.html for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [20s/27s] OK
- checking Rd files ... [1s/2s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [5s/6s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [11s/14s] OK
Running 'testthat.R' [11s/14s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking re-building of vignette outputs ... [29s/50s] OK
- checking PDF version of manual ... OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 WARNING