* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘ubms’ ...
** this is package ‘ubms’ version ‘1.2.8’
** package ‘ubms’ successfully unpacked and MD5 sums checked
** using staged installation
Registered S3 methods overwritten by 'RcppEigen':
method from
predict.fastLm RcppArmadillo
print.fastLm RcppArmadillo
summary.fastLm RcppArmadillo
print.summary.fastLm RcppArmadillo
Warning message:
In .warning_nowrite(file.path(basename(pkgdir), ...)) :
'ubms/src/Makevars' already exists. Not overwritten by rstantools.FALSE
** libs
using C++ compiler: ‘Debian clang version 21.1.8 (3+b1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKdbyog/R.INSTALL38ed8d19137578/ubms/src'
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
5 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c exp_counts_occu.cpp -o exp_counts_occu.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c loglik.cpp -o loglik.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c simz.cpp -o simz.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c stanExports_colext.cc -o stanExports_colext.o
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
47 | virtual std::streamsize xsputn(const char_type* s, int n) {
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/streambuf:751:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
751 | xsputn(const char_type* __s, streamsize __n);
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
70 | virtual std::streamsize xsputn(const char_type* s, int n) {
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/streambuf:751:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
751 | xsputn(const char_type* __s, streamsize __n);
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun.hpp:35:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here?
45 | class ops_partials_edge;
| ^~~~~
| struct
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimension.hpp:21:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
1252 | int ret = stan::services::error_codes::CONFIG;
| ^
In file included from stanExports_colext.cc:5:
./stanExports_colext.h:2886:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
2886 | int pos__ = std::numeric_limits<int>::min();
| ^
In file included from stanExports_colext.cc:5:
In file included from ./stanExports_colext.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/reduce_sum.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/task_arena.h:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/task.h:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/tbb_profiling.h:120:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
439 | __TBB_DECL_ATOMIC(long)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
440 | __TBB_DECL_ATOMIC(unsigned long)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
466 | __TBB_DECL_ATOMIC(unsigned)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
467 | __TBB_DECL_ATOMIC(int)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
470 | __TBB_DECL_ATOMIC(unsigned short)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
471 | __TBB_DECL_ATOMIC(short)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
472 | __TBB_DECL_ATOMIC(char)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
473 | __TBB_DECL_ATOMIC(signed char)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
474 | __TBB_DECL_ATOMIC(unsigned char)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
477 | __TBB_DECL_ATOMIC(wchar_t)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
509 | this->store_with_release(rhs); return *this;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
140 | return static_cast<flag_task*>(t.parent())->my_child_stolen;
| ^
32 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c stanExports_single_season.cc -o stanExports_single_season.o
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
47 | virtual std::streamsize xsputn(const char_type* s, int n) {
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/streambuf:751:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
751 | xsputn(const char_type* __s, streamsize __n);
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
70 | virtual std::streamsize xsputn(const char_type* s, int n) {
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/streambuf:751:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
751 | xsputn(const char_type* __s, streamsize __n);
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun.hpp:35:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here?
45 | class ops_partials_edge;
| ^~~~~
| struct
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimension.hpp:21:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
1252 | int ret = stan::services::error_codes::CONFIG;
| ^
In file included from stanExports_single_season.cc:5:
./stanExports_single_season.h:3640:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
3640 | int pos__ = std::numeric_limits<int>::min();
| ^
In file included from stanExports_single_season.cc:5:
In file included from ./stanExports_single_season.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/reduce_sum.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/task_arena.h:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/task.h:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/tbb_profiling.h:120:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
439 | __TBB_DECL_ATOMIC(long)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
440 | __TBB_DECL_ATOMIC(unsigned long)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
466 | __TBB_DECL_ATOMIC(unsigned)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
467 | __TBB_DECL_ATOMIC(int)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
470 | __TBB_DECL_ATOMIC(unsigned short)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
471 | __TBB_DECL_ATOMIC(short)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
472 | __TBB_DECL_ATOMIC(char)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
473 | __TBB_DECL_ATOMIC(signed char)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
474 | __TBB_DECL_ATOMIC(unsigned char)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
477 | __TBB_DECL_ATOMIC(wchar_t)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
509 | this->store_with_release(rhs); return *this;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
140 | return static_cast<flag_task*>(t.parent())->my_child_stolen;
| ^
32 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c stanExports_spatial.cc -o stanExports_spatial.o
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
47 | virtual std::streamsize xsputn(const char_type* s, int n) {
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/streambuf:751:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
751 | xsputn(const char_type* __s, streamsize __n);
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
70 | virtual std::streamsize xsputn(const char_type* s, int n) {
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/streambuf:751:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
751 | xsputn(const char_type* __s, streamsize __n);
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun.hpp:35:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here?
45 | class ops_partials_edge;
| ^~~~~
| struct
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimension.hpp:21:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
1252 | int ret = stan::services::error_codes::CONFIG;
| ^
In file included from stanExports_spatial.cc:5:
./stanExports_spatial.h:3884:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
3884 | int pos__ = std::numeric_limits<int>::min();
| ^
In file included from stanExports_spatial.cc:5:
In file included from ./stanExports_spatial.h:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/reduce_sum.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/task_arena.h:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/task.h:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/tbb_profiling.h:120:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
439 | __TBB_DECL_ATOMIC(long)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
440 | __TBB_DECL_ATOMIC(unsigned long)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
466 | __TBB_DECL_ATOMIC(unsigned)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
467 | __TBB_DECL_ATOMIC(int)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
470 | __TBB_DECL_ATOMIC(unsigned short)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
471 | __TBB_DECL_ATOMIC(short)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
472 | __TBB_DECL_ATOMIC(char)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
473 | __TBB_DECL_ATOMIC(signed char)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
474 | __TBB_DECL_ATOMIC(unsigned char)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
477 | __TBB_DECL_ATOMIC(wchar_t)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
422 | atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;} \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
509 | this->store_with_release(rhs); return *this;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
226 | converter(value_type a_value) : value(a_value) {}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
255 | static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
297 | __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
140 | return static_cast<flag_task*>(t.parent())->my_child_stolen;
| ^
32 warnings generated.
clang++-21 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o ubms.so RcppExports.o exp_counts_occu.o loglik.o simz.o stanExports_colext.o stanExports_single_season.o stanExports_spatial.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/lib/ -Wl,-rpath,/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/lib/ -ltbb -ltbbmalloc -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-21/lib/clang/21/lib/linux -L/usr/lib/llvm-21/lib -lflang_rt.runtime -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKdbyog/R.INSTALL38ed8d19137578/ubms/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKdbyog/R.INSTALL38ed8d19137578/ubms/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKdbyog/R.INSTALL38ed8d19137578/ubms/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-ubms/00new/ubms/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ubms)