• using R Under development (unstable) (2025-12-18 r89199)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 21.1.7 (1)     Debian flang version 21.1.7 (1)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘tabxplor/DESCRIPTION’ ... OK
• this is package ‘tabxplor’ version ‘1.3.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘tabxplor’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking whether startup messages can be suppressed ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [29s/36s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/5s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [50s/56s] ERROR   Running ‘testthat.R’ [50s/55s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(tabxplor)   >   > # # CRAN OMP THREAD LIMIT   > # threads_option <- Sys.getenv("OMP_THREAD_LIMIT")   > #Sys.setenv("OMP_THREAD_LIMIT" = 2)   >   >   >   > test_check("tabxplor")   Saving _problems/test-tab-99.R   28 rows with zero or NA weights were removed   Saving _problems/test-tab-158.R   Saving _problems/test-tab-254.R   Saving _problems/test-tab-273.R   [1] "/home/hornik/tmp/scratch/Rtmp5rAsaZ/tab_xl_test.xlsx"   [1] "/home/hornik/tmp/scratch/Rtmp5rAsaZ/tab_xl_test.xlsx"   [ FAIL 4 | WARN 0 | SKIP 0 | PASS 190 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-tab.R:99:3'): tab_num works with missing, NULL, NA, etc. ───────   Error in ``[.data.table`(tabs, , `:=`(paste0(col_vars, "_diff"), purrr::map(rlang::syms(paste0(col_vars, "_mean")), ~eval(.)/dplyr::nth(eval(.), tidyr::replace_na(which(eval(rlang::sym("ref_rows___")))[1], 0)))), by = eval(comp_group))`: attempt access index 9/9 in VECTOR_ELT   Backtrace:       ▆    1. ├─... %>% testthat::expect_s3_class("tabxplor_tab") at test-tab.R:99:3    2. ├─testthat::expect_s3_class(., "tabxplor_tab")    3. │ └─testthat::quasi_label(enquo(object))    4. │ └─rlang::eval_bare(expr, quo_get_env(quo))    5. └─tabxplor::tab_num(...)    6. ├─...[]    7. └─data.table:::`[.data.table`(...)   ── Error ('test-tab.R:158:3'): tab_many works with numeric variables ───────────   <purrr_error_indexed/rlang_error/error/condition>   Error in `purrr::pmap(list(row_vars, totaltab, totrow, ref, comp, color_num, ci, na_num), ~tab_num(data, !!..1, as.character(col_vars)[col_vars_num], as.character(tab_vars), wt = !!wt, na = ..8, digits = digits[col_vars_num], ref = ..4, ci = ..7, conf_level = conf_level, comp = ..5, color = ..6, totaltab = ..2, totaltab_name = totaltab_name, tot = dplyr::if_else(..3, "row", "no"), total_names = total_names))`: i In index: 1.   Caused by error in `[.data.table`:   ! attempt access index 6/6 in VECTOR_ELT   Backtrace:        ▆     1. ├─testthat::expect_s3_class(...) at test-tab.R:158:3     2. │ └─testthat::quasi_label(enquo(object))     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))     4. ├─tabxplor::tab_many(data, sex, mass, gender)     5. │ ├─... %>% purrr::set_names(row_vars)     6. │ └─purrr::pmap(...)     7. │ └─purrr:::pmap_("list", .l, .f, ..., .progress = .progress)     8. │ ├─purrr:::with_indexed_errors(...)     9. │ │ └─base::withCallingHandlers(...)    10. │ ├─purrr:::call_with_cleanup(...)    11. │ └─tabxplor (local) .f(...)    12. │ └─tabxplor::tab_num(...)    13. │ ├─...[]    14. │ └─data.table:::`[.data.table`(...)    15. ├─purrr::set_names(., row_vars)    16. └─base::.handleSimpleError(...)    17. └─purrr (local) h(simpleError(msg, call))    18. └─cli::cli_abort(...)    19. └─rlang::abort(...)   ── Error ('test-tab.R:247:3'): tab_many work with tribble ──────────────────────   <purrr_error_indexed/rlang_error/error/condition>   Error in `purrr::pmap(., tab_many, data = data, totcol = "no", totaltab = "no")`: i In index: 2.   Caused by error in `purrr::pmap()`:   i In index: 1.   Caused by error in `[.data.table`:   ! attempt access index 6/6 in VECTOR_ELT   ── Error ('test-tab.R:266:3'): tab work with tribble (even many tab_vars) ──────   <purrr_error_indexed/rlang_error/error/condition>   Error in `purrr::pmap(., tab, data = data)`: i In index: 2.   Caused by error in `purrr::pmap()`:   i In index: 1.   Caused by error in `[.data.table`:   ! attempt access index 6/6 in VECTOR_ELT      [ FAIL 4 | WARN 0 | SKIP 0 | PASS 190 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [35s/39s] OK
• checking PDF version of manual ... [9s/12s] OK
• checking HTML version of manual ... [9s/14s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR