- using R Under development (unstable) (2025-12-18 r89199)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 21.1.7 (1)
Debian flang version 21.1.7 (1)
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘table1/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘table1’ version ‘1.5.1’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [2s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘table1’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [7s/8s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [1s/2s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [15s/21s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘table1-examples.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘table1-examples.Rmd’
--- re-building ‘table1-latex.Rmd’ using rmarkdown
Quitting from table1-latex.Rmd:123-125 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 14/14 in VECTOR_ELT
---
Backtrace:
x
1. \-tools:::.buildOneVignette(...)
2. +-base::tryCatch(...)
3. | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
4. | \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. | \-base (local) doTryCatch(return(expr), name, parentenv, handler)
6. \-engine$weave(file, quiet = quiet, encoding = enc)
7. \-knitr:::vweave_rmarkdown(...)
8. \-rmarkdown::render(...)
9. \-knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
10. \-knitr:::process_file(text, output)
11. +-xfun:::handle_error(...)
12. +-base::withCallingHandlers(...)
13. \-knitr:::process_group(group)
14. \-knitr:::call_block(x)
15. \-knitr:::block_exec(params)
16. \-knitr:::eng_r(options)
17. +-knitr:::in_input_dir(...)
18. | \-knitr:::in_dir(input_dir(), expr)
19. \-knitr (local) evaluate(...)
20. \-evaluate::evaluate(...)
21. +-base::withRestarts(...)
22. | \-base (local) withRestartList(expr, restarts)
23. | +-base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
24. | | \-base (local) doWithOneRestart(return(expr), restart)
25. | \-base (local) withRestartList(expr, restarts[-nr])
26. | \-base (local) withOneRestart(expr, restarts[[1L]])
27. | \-base (local) doWithOneRestart(return(expr), restart)
28. +-evaluate:::with_handlers(...)
29. | +-base::eval(call)
30. | | \-base::eval(call)
31. | \-base::withCallingHandlers(...)
32. \-watcher$print_value(ev$value, ev$visible, envir)
33. +-base::withVisible(handle_value(handler, value, visible, envir))
34. \-evaluate:::handle_value(handler, value, visible, envir)
35. \-handler$value(value, visible)
36. \-knitr (local) fun(x, options = options)
37. +-base::withVisible(knit_print(x, ...))
38. +-knitr::knit_print(x, ...)
39. \-flextable:::knit_print.flextable(x, ...)
40. \-flextable:::knit_to_latex(x, bookdown = is_bookdown, quarto = is_quarto)
41. \-flextable:::gen_raw_latex(...)
42. \-flextable:::latex_gridlines(properties_df)
43. \-flextable:::fortify_latex_borders(properties_df)
44. +-...[]
45. \-data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'table1-latex.Rmd' failed with diagnostics:
attempt access index 14/14 in VECTOR_ELT
--- failed re-building ‘table1-latex.Rmd’
--- re-building ‘table1-weighted.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘table1-weighted.Rmd’
SUMMARY: processing the following file failed:
‘table1-latex.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [5s/7s] OK
- checking HTML version of manual ... [2s/3s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR