- using R Under development (unstable) (2024-10-09 r87215)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.1 (1)
Debian flang-new version 19.1.1 (1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘survminer/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘survminer’ version ‘0.4.9’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘survminer’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/4s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the package can be unloaded cleanly ... [3s/3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
- checking loading without being on the library search path ... [3s/4s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [25s/30s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
ggadjustedcurves.Rd: coxph.object, coxph
ggcompetingrisks.Rd: survfit
ggcoxdiagnostics.Rd: coxph, coxph.object, residuals.coxph,
geom_hline, geom_smooth
ggcoxfunctional.Rd: coxph, Surv, coxph.object, arrangeGrob,
grid.arrange
ggcoxzph.Rd: plot.cox.zph, cox.zph, arrangeGrob, grid.arrange
ggsurvevents.Rd: Surv, survfit
ggsurvplot.Rd: grid.arrange
surv_cutpoint.Rd: theme_classic, grid.arrange
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [53s/72s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ggsurvplot_group_by 4.417 0.000 5.633
ggsurvplot 4.358 0.043 5.536
ggsurvplot_facet 4.050 0.008 5.579
ggsurvplot_add_all 3.746 0.051 5.783
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [5s/6s] OK
Running ‘testthat.R’ [4s/5s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [70s/95s] OK
- checking PDF version of manual ... [8s/12s] OK
- checking HTML version of manual ... [2s/4s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE