* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘surtvep’ ... ** package ‘surtvep’ successfully unpacked and MD5 sums checked ** using staged installation ./configure: 7: cannot create inst/cc: Directory nonexistent ./configure: 8: cannot create inst/cc: Directory nonexistent zlib 1.3.1 is available ok clang-19: error: unknown argument: '-g -O3 -Wall -pedantic' *** OpenMP not supported! data.table uses OpenMP to automatically *** parallelize operations like sorting, grouping, file reading, etc. *** For details on how to install the necessary toolchains on your OS see: *** https://github.com/Rdatatable/data.table/wiki/Installation *** Continuing installation without OpenMP support... ** libs using C++ compiler: ‘Debian clang version 19.1.4 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplnDXj3/R.INSTALLa483447dceea/surtvep/src' clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c PenalizeStopCpp.cpp -o PenalizeStopCpp.o In file included from PenalizeStopCpp.cpp:5: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ PenalizeStopCpp.cpp:3:9: note: previous definition is here 3 | #define ARMA_DONT_USE_OPENMP | ^ 1 warning generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c header.cpp -o header.o clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o surtvep.so PenalizeStopCpp.o RcppExports.o header.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplnDXj3/R.INSTALLa483447dceea/surtvep/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplnDXj3/R.INSTALLa483447dceea/surtvep/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplnDXj3/R.INSTALLa483447dceea/surtvep/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-surtvep/00new/surtvep/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (surtvep)