• using R Under development (unstable) (2023-12-04 r85659)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 17.0.5 (1)     Debian flang-new version 17.0.5 (1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘stacomiR/DESCRIPTION’ ... OK
• this is package ‘stacomiR’ version ‘0.6.0.7’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘stacomiR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [6s/9s] OK
• checking whether the package can be loaded with stated dependencies ... [6s/8s] OK
• checking whether the package can be unloaded cleanly ... [7s/9s] OK
• checking whether the namespace can be loaded with stated dependencies ... [5s/8s] OK
• checking whether the namespace can be unloaded cleanly ... [6s/8s] OK
• checking loading without being on the library search path ... [7s/8s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [53s/62s] OK
• checking Rd files ... [2s/3s] NOTE checkRd: (-1) calcule-report_mig-method.Rd:27: Lost braces     27 | to number coefficients in the database (see link{report_ge_weight}).}        | ^ checkRd: (-1) calcule-report_mig_mult-method.Rd:31: Lost braces     31 | to number coefficients in the database (see link{report_ge_weight}).}        | ^ checkRd: (-1) model-report_ge_weight-method.Rd:30-33: Lost braces in \itemize; meant \describe ? checkRd: (-1) model-report_ge_weight-method.Rd:34-40: Lost braces in \itemize; meant \describe ? checkRd: (-1) model-report_ge_weight-method.Rd:41-44: Lost braces in \itemize; meant \describe ? checkRd: (-1) model-report_ge_weight-method.Rd:45-48: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_dc-missing-method.Rd:43: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_dc-missing-method.Rd:44: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_dc-missing-method.Rd:45: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_dc-missing-method.Rd:46: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_df-missing-method.Rd:38: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_df-missing-method.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_df-missing-method.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_df-missing-method.Rd:41: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_mig-ANY-method.Rd:40-41: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_mig-ANY-method.Rd:42: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_mig-ANY-method.Rd:43: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_mig_mult-missing-method.Rd:37-38: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_mig_mult-missing-method.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_mig_mult-missing-method.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_sea_age-missing-method.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_sea_age-missing-method.Rd:16: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_silver_eel-missing-method.Rd:15-16: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_silver_eel-missing-method.Rd:17-18: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_silver_eel-missing-method.Rd:19-20: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot-report_silver_eel-missing-method.Rd:21: Lost braces in \itemize; meant \describe ?
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE Documented arguments not in \usage in Rd file 'connect-report_mig-method.Rd':   ‘h’ ‘...’ Documented arguments not in \usage in Rd file 'print-report_mig-method.Rd':   ‘h’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [7s/8s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [33s/37s] OK Examples with CPU (user + system) or elapsed time > 5s                 user system elapsed report_dc-class 9.73 0.38 11.009
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [56s/69s] OK   Running ‘testthat.R’ [56s/69s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [12s/17s] OK
• checking PDF version of manual ... [15s/20s] OK
• checking HTML version of manual ... [10s/21s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs