* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘stLMM’ ...
** this is package ‘stLMM’ version ‘0.0.3’
** package ‘stLMM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C compiler: ‘Debian clang version 22.1.8 (1+b2)’
using C++ compiler: ‘Debian clang version 22.1.8 (1+b2)’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwE1jLY/R.INSTALL1b56cc23fedc0f/stLMM/src'
clang-22 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c Matrix_stubs.c -o Matrix_stubs.o
clang++-22 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic   -c corModels.cpp -o corModels.o
clang-22 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang++-22 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic   -c nn.cpp -o nn.o
clang++-22 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic   -c stLMM_common.cpp -o stLMM_common.o
clang++-22 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic   -c stLMM_covariance.cpp -o stLMM_covariance.o
clang++-22 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic   -c stLMM_precision.cpp -o stLMM_precision.o
clang++-22 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic   -c stLMM_predict.cpp -o stLMM_predict.o
clang++-22 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic   -c stLMM_recover.cpp -o stLMM_recover.o
clang++-22 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic   -c stLMM_sampler.cpp -o stLMM_sampler.o
clang++-22 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic   -c stLMM_state.cpp -o stLMM_state.o
clang++-22 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic   -c utils.cpp -o utils.o
clang++-22 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o stLMM.so Matrix_stubs.o corModels.o init.o nn.o stLMM_common.o stLMM_covariance.o stLMM_precision.o stLMM_predict.o stLMM_recover.o stLMM_sampler.o stLMM_state.o utils.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-22/lib/clang/22/lib/linux -L/usr/lib/llvm-22/lib -lflang_rt.runtime -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwE1jLY/R.INSTALL1b56cc23fedc0f/stLMM/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwE1jLY/R.INSTALL1b56cc23fedc0f/stLMM/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwE1jLY/R.INSTALL1b56cc23fedc0f/stLMM/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-stLMM/00new/stLMM/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (stLMM)