* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘sommer’ ...
** package ‘sommer’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.7 (1)’
make[1]: Entering directory '/tmp/RtmpysyIgH/R.INSTALL226286138b7916/sommer/src'
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c MNR.cpp -o MNR.o
In file included from MNR.cpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/armadillo:26:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:326:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  326 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:331:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  331 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:334:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  334 |   #pragma message ("INFO: see the documentation for details")
      |           ^
MNR.cpp:306:7: warning: unused variable 'p' [-Wunused-variable]
  306 |   int p = X.n_cols;
      |       ^
MNR.cpp:1299:12: warning: unused variable 'ok' [-Wunused-variable]
 1299 |       bool ok = log_det(val, sign, arma::mat(Ai[i])); // calculate the logDet of the covariance matrix
      |            ^~
MNR.cpp:1522:14: warning: unused variable 'ok' [-Wunused-variable]
 1522 |         bool ok = log_det(val, sign, theta(i));  // form 2
      |              ^~
MNR.cpp:1528:10: warning: unused variable 'ok' [-Wunused-variable]
 1528 |     bool ok = log_det(val, sign, theta(nRRe-1));  // form 2
      |          ^~
7 warnings generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c RcppExports.cpp -o RcppExports.o
clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o sommer.so MNR.o RcppExports.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpysyIgH/R.INSTALL226286138b7916/sommer/src'
make[1]: Entering directory '/tmp/RtmpysyIgH/R.INSTALL226286138b7916/sommer/src'
make[1]: Leaving directory '/tmp/RtmpysyIgH/R.INSTALL226286138b7916/sommer/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-sommer/00new/sommer/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘sommer’ as ‘sommer_4.3.4_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (sommer)