* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘skm’ ... ** this is package ‘skm’ version ‘0.1.5.4’ ** package ‘skm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.7 (7)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmzQkPW/R.INSTALL1b9b41a4ecab4/skm/src' clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c RcppExports.cpp -o RcppExports.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c dist_wlatlng.cpp -o dist_wlatlng.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c matrix_minmax.cpp -o matrix_minmax.o matrix_minmax.cpp:13:7: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations] 13 | u.min(min_val_idx); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:5: note: 'min' has been explicitly marked deprecated here 544 | [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const; | ^ matrix_minmax.cpp:17:13: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations] 17 | u(wlmt).min(min_val_idx); min_val_idx = wlmt(min_val_idx); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Base_bones.hpp:130:5: note: 'min' has been explicitly marked deprecated here 130 | [[deprecated("use .index_min() instead")]] inline elem_type min(uword& index_of_min_val) const; | ^ matrix_minmax.cpp:33:7: warning: 'max' is deprecated: use .index_max() instead [-Wdeprecated-declarations] 33 | u.max(max_val_idx); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:545:5: note: 'max' has been explicitly marked deprecated here 545 | [[deprecated("use .index_max() instead")]] inline eT max(uword& index_of_max_val) const; | ^ matrix_minmax.cpp:37:13: warning: 'max' is deprecated: use .index_max() instead [-Wdeprecated-declarations] 37 | u(wlmt).max(max_val_idx); max_val_idx = wlmt(max_val_idx); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Base_bones.hpp:131:5: note: 'max' has been explicitly marked deprecated here 131 | [[deprecated("use .index_max() instead")]] inline elem_type max(uword& index_of_max_val) const; | ^ 4 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c skm.cpp -o skm.o skm.cpp:396:14: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations] 396 | o = o_list.min(optim_at); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:5: note: 'min' has been explicitly marked deprecated here 544 | [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const; | ^ skm.cpp:483:14: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations] 483 | o = o_list.min(optim_at); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:5: note: 'min' has been explicitly marked deprecated here 544 | [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const; | ^ 2 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c skm_gdp.cpp -o skm_gdp.o skm_gdp.cpp:57:32: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations] 57 | rs = arma::sum(x, 1); rs.min(id); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:5: note: 'min' has been explicitly marked deprecated here 544 | [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const; | ^ 1 warning generated. clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o skm.so RcppExports.o dist_wlatlng.o matrix_minmax.o skm.o skm_gdp.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmzQkPW/R.INSTALL1b9b41a4ecab4/skm/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmzQkPW/R.INSTALL1b9b41a4ecab4/skm/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmzQkPW/R.INSTALL1b9b41a4ecab4/skm/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-skm/00new/skm/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (skm)