* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘shrinkr’ ... ** this is package ‘shrinkr’ version ‘0.4.5’ ** package ‘shrinkr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘Debian clang version 23.1.1 (2)’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp08Wlw6/R.INSTALL7df744127b2bd/shrinkr/src' clang++-23 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-23 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O3 -Wall -pedantic -c stanExports_stage2_shrinkage.cc -o stanExports_stage2_shrinkage.o In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 47 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/lib/gcc/x86_64-linux-gnu/16/../../../../include/c++/16/streambuf:756:7: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 756 | xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 70 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/lib/gcc/x86_64-linux-gnu/16/../../../../include/c++/16/streambuf:756:7: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 756 | xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimension.hpp:21: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/prob.hpp:290: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable] 74 | static constexpr const char* function = "student_t_qf"; | ^~~~~~~~ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/prob.hpp:7: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable] 52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val; | ^~~~~~~~~~ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable] 42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0); | ^~~~~~~~~~~~~~~~~ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:54: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 98 | int ret = 0; | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:11: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/indexing.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable] 520 | const Eigen::Index rows = row_idx.ns_.size(); | ^~~~ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable] 521 | const Eigen::Index cols = col_idx.ns_.size(); | ^~~~ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev.hpp:11: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/constraint.hpp:14: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:125:13: warning: lambda capture 'ub' is not used [-Wunused-lambda-capture] 125 | [x, ub, lb, diff, lp, inv_logit_x](auto& vi) mutable { | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/constraint/lub_constrain.hpp:403:12: note: in instantiation of function template specialization 'stan::math::lub_constrain, double, double, nullptr, nullptr>' requested here 403 | return lub_constrain(std::forward(x), std::forward(lb), | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/deserializer.hpp:434:24: note: in instantiation of function template specialization 'stan::math::lub_constrain, const double &, const double &, stan::math::var_value, nullptr>' requested here 434 | return stan::math::lub_constrain(this->read(sizes...), lb, | ^ ./stanExports_stage2_shrinkage.h:963:23: note: in instantiation of function template specialization 'stan::io::deserializer>::read_constrain_lub, true, double, double, stan::math::var_value>' requested here 963 | in__.template read_constrain_lub>, std::vector, nullptr, nullptr, nullptr>' requested here 1429 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_stage2_shrinkage_namespace::model_stage2_shrinkage::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 169 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_stage2_shrinkage.cc:15:73: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev.hpp:11: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/constraint.hpp:14: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:125:17: warning: lambda capture 'lb' is not used [-Wunused-lambda-capture] 125 | [x, ub, lb, diff, lp, inv_logit_x](auto& vi) mutable { | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:53:34: warning: lambda capture 'ub' is not used [-Wunused-lambda-capture] 53 | [x, ub, lb, diff, inv_logit_x](auto& vi) mutable { | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/constraint/lub_constrain.hpp:406:12: note: in instantiation of function template specialization 'stan::math::lub_constrain, double, double, nullptr, nullptr>' requested here 406 | return lub_constrain(std::forward(x), std::forward(lb), | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/deserializer.hpp:434:24: note: in instantiation of function template specialization 'stan::math::lub_constrain, const double &, const double &, stan::math::var_value, nullptr>' requested here 434 | return stan::math::lub_constrain(this->read(sizes...), lb, | ^ ./stanExports_stage2_shrinkage.h:963:23: note: in instantiation of function template specialization 'stan::io::deserializer>::read_constrain_lub, false, double, double, stan::math::var_value>' requested here 963 | in__.template read_constrain_lub>, std::vector, nullptr, nullptr, nullptr>' requested here 1429 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_stage2_shrinkage_namespace::model_stage2_shrinkage::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 169 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/services/optimize/newton.hpp:54:25: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 54 | cont_vector = util::initialize(model, init, rng, init_radius, false, | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:502:35: note: in instantiation of function template specialization 'stan::services::optimize::newton' requested here 502 | = stan::services::optimize::newton(model, *init_context_ptr, | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_stage2_shrinkage.cc:15:73: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_stage2_shrinkage.cc:5: In file included from ./stanExports_stage2_shrinkage.h:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev.hpp:11: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/constraint.hpp:14: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:53:38: warning: lambda capture 'lb' is not used [-Wunused-lambda-capture] 53 | [x, ub, lb, diff, inv_logit_x](auto& vi) mutable { | ^ 26 warnings generated. clang++-23 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o shrinkr.so RcppExports.o stanExports_stage2_shrinkage.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/lib/ -Wl,-rpath,/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/lib/ -ltbb -ltbbmalloc -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp08Wlw6/R.INSTALL7df744127b2bd/shrinkr/src' make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp08Wlw6/R.INSTALL7df744127b2bd/shrinkr/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp08Wlw6/R.INSTALL7df744127b2bd/shrinkr/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-shrinkr/00new/shrinkr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shrinkr)