* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/shipunov.Rcheck’
* using R Under development (unstable) (2025-07-13 r88407)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (3+b1)
    Debian flang-new version 19.1.7 (3+b1)
* running under: Debian GNU/Linux 13 (trixie)
* using session charset: UTF-8
* checking for file ‘shipunov/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘shipunov’ version ‘1.17.1’
* checking CRAN incoming feasibility ... [1s/2s] NOTE
Maintainer: ‘ORPHANED’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexey",
                      family = "Shipunov",
                      role = c("aut", "cre")),
               person(given = "Paul",
                      family = "Murrell",
                      role = "ctb"),
               person(given = "Marcello",
                      family = "D'Orazio",
                      role = "ctb"),
               person(given = "Stephen",
                      family = "Turner",
                      role = "ctb"),
               person(given = "Eugeny",
                      family = "Altshuler",
                      role = "ctb"),
               person(given = "Roland",
                      family = "Rau",
                      role = "ctb"),
               person(given = c("Marcus", "W"),
                      family = "Beck",
                      role = "ctb"),
               person(given = "Sebastian",
                      family = "Gibb",
                      role = "ctb"),
               person(given = "Weiliang",
                      family = "Qiu",
                      role = "ctb"),
               person(given = "Emmanuel",
                      family = "Paradis",
                      role = "ctb"),
               person(given = "Roger",
                      family = "Koenker",
                      role = "ctb"),
               person(given = c("R", "Core"),
                      family = "Team",
                      role = "ctb"),
               person(family = "ORPHANED",
                      role = "cre"))
as necessary.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘shipunov’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/shipunov-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking whether startup messages can be suppressed ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [18s/22s] OK
* checking Rd files ... [1s/1s] NOTE
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [36s/49s] OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
NC.dist        5.292  0.045   6.605
PlotBest.mdist 4.753  0.063   6.423
BootKNN        4.311  0.015   5.400
* checking PDF version of manual ... [9s/12s] OK
* checking HTML version of manual ... [5s/8s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 2 NOTEs