• using R Under development (unstable) (2025-07-15 r88411)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (3+b1)     Debian flang-new version 19.1.7 (3+b1)
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘sharp/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘sharp’ version ‘1.4.7’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/4s] OK
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘rCOSA’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘sharp’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [28s/36s] OK
• checking Rd files ... [2s/3s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... INFO Package unavailable to check Rd xrefs: ‘rCOSA’
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [27s/33s] ERROR Running examples in ‘sharp-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: SelectionAlgo > ### Title: Variable selection algorithm > ### Aliases: SelectionAlgo > > ### ** Examples > > # Data simulation (univariate outcome) > set.seed(1) > simul <- SimulateRegression(pk = 50) > > # Running the LASSO > mylasso <- SelectionAlgo( + xdata = simul$xdata, ydata = simul$ydata, + Lambda = c(0.1, 0.2), family = "gaussian", + ) > > # Data simulation (multivariate outcome) > set.seed(1) > simul <- SimulateRegression(pk = 50, q = 3) > > # Running multivariate Gaussian LASSO > mylasso <- SelectionAlgo( + xdata = simul$xdata, ydata = simul$ydata, + Lambda = c(0.1, 0.2), family = "mgaussian" + ) Error in `[<-`(`*tmp*`, rownames(tmpbeta), colnames(tmpbeta), y_id, value = tmpbeta) :   subscript out of bounds Calls: SelectionAlgo -> do.call -> <Anonymous> Execution halted Examples with CPU (user + system) or elapsed time > 5s             user system elapsed PredictPLS 4.556 0.001 6.06
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/3s] OK   Running ‘testthat.R’ [1s/2s]
• checking PDF version of manual ... [13s/18s] OK
• checking HTML version of manual ... [6s/11s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR