* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘shaman’ ...
** this is package ‘shaman’ version ‘2.1.1’
** package ‘shaman’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘Debian clang version 23.1.3 (1)’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7QY492/R.INSTALL1cab335fc6fd5e/shaman/src'
clang++-23 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -pthread -fpic  -g -O3 -Wall -pedantic   -c ContactShuffler.cpp -o ContactShuffler.o
clang++-23 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -pthread -fpic  -g -O3 -Wall -pedantic   -c GenomeGridLog.cpp -o GenomeGridLog.o
clang++-23 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -pthread -fpic  -g -O3 -Wall -pedantic   -c Parser.cpp -o Parser.o
clang++-23 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -pthread -fpic  -g -O3 -Wall -pedantic   -c Random.cpp -o Random.o
clang++-23 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -pthread -fpic  -g -O3 -Wall -pedantic   -c RcppExports.cpp -o RcppExports.o
clang++-23 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -pthread -fpic  -g -O3 -Wall -pedantic   -c hic_matrix_shuffler.cpp -o hic_matrix_shuffler.o
clang++-23 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -pthread -fpic  -g -O3 -Wall -pedantic   -c merge_ks.cpp -o merge_ks.o
clang++-23 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o shaman.so ContactShuffler.o GenomeGridLog.o Parser.o Random.o RcppExports.o hic_matrix_shuffler.o merge_ks.o -pthread -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7QY492/R.INSTALL1cab335fc6fd5e/shaman/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7QY492/R.INSTALL1cab335fc6fd5e/shaman/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7QY492/R.INSTALL1cab335fc6fd5e/shaman/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-shaman/00new/shaman/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (shaman)