* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘seine’ ...
** this is package ‘seine’ version ‘0.1.2’
** package ‘seine’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++20
using C++ compiler: ‘Debian clang version 22.1.8 (1)’
using C++20
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpa3MEVc/R.INSTALL2c2d83da8a5a7/seine/src'
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_DONT_USE_BLAS -DPRINT_LN='std::cout << __func__ << "(), " << __FILE__ << ":" << __LINE__ << "\n";' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11armadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fpic -g -O3 -Wall -pedantic -c R_interface.cpp -o R_interface.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_DONT_USE_BLAS -DPRINT_LN='std::cout << __func__ << "(), " << __FILE__ << ":" << __LINE__ << "\n";' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11armadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fpic -g -O3 -Wall -pedantic -c bounds.cpp -o bounds.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_DONT_USE_BLAS -DPRINT_LN='std::cout << __func__ << "(), " << __FILE__ << ":" << __LINE__ << "\n";' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11armadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fpic -g -O3 -Wall -pedantic -c cpp11.cpp -o cpp11.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_DONT_USE_BLAS -DPRINT_LN='std::cout << __func__ << "(), " << __FILE__ << ":" << __LINE__ << "\n";' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11armadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fpic -g -O3 -Wall -pedantic -c epmgp.cpp -o epmgp.o
epmgp.cpp:169:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
169 | context("EPMGP Tests") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
epmgp.cpp:169:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
epmgp.cpp:170:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
170 | test_that("Log erf difference is correctly calculated") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
epmgp.cpp:186:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
186 | test_that("Truncated Normal moments are correctly calculated") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
epmgp.cpp:201:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
201 | test_that("Gaussian moments are correctly calculated") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
5 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_DONT_USE_BLAS -DPRINT_LN='std::cout << __func__ << "(), " << __FILE__ << ":" << __LINE__ << "\n";' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11armadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fpic -g -O3 -Wall -pedantic -c lp.cpp -o lp.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_DONT_USE_BLAS -DPRINT_LN='std::cout << __func__ << "(), " << __FILE__ << ":" << __LINE__ << "\n";' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11armadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fpic -g -O3 -Wall -pedantic -c random.cpp -o random.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_DONT_USE_BLAS -DPRINT_LN='std::cout << __func__ << "(), " << __FILE__ << ":" << __LINE__ << "\n";' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11armadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fpic -g -O3 -Wall -pedantic -c test-runner.cpp -o test-runner.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_DONT_USE_BLAS -DPRINT_LN='std::cout << __func__ << "(), " << __FILE__ << ":" << __LINE__ << "\n";' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11armadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fpic -g -O3 -Wall -pedantic -c tmvn.cpp -o tmvn.o
clang++-22 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o seine.so R_interface.o bounds.o cpp11.o epmgp.o lp.o random.o test-runner.o tmvn.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-22/lib/clang/22/lib/linux -L/usr/lib/llvm-22/lib -lflang_rt.runtime -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpa3MEVc/R.INSTALL2c2d83da8a5a7/seine/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpa3MEVc/R.INSTALL2c2d83da8a5a7/seine/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpa3MEVc/R.INSTALL2c2d83da8a5a7/seine/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-seine/00new/seine/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (seine)