• using R Under development (unstable) (2025-12-07 r89119)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 21.1.6 (2)     Debian flang version 21.1.6 (2)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘sarp.snowprofile/DESCRIPTION’ ... OK
• this is package ‘sarp.snowprofile’ version ‘1.3.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘sarp.snowprofile’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [16s/21s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/2s] ERROR Running examples in ‘sarp.snowprofile-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: export.snowprofileCsv > ### Title: Export or write a snowprofile object to a CSV table > ### Aliases: export.snowprofileCsv > > ### ** Examples > > > ## export an entire snowprofile object: > > export.snowprofileCsv(SPpairs$A_manual, filename = file.path(tempdir(), 'file.csv'), + export.all = TRUE) > > > ## export only the layer properties of a snowprofile object, > # and change the column order with few column names: > # All layer variables will be exported, but the three ones provided in 'variables' > # will be the first three columns of the csv table, and their column names will be changed > # accordingly. > > export.snowprofileCsv(SPpairs$A_manual, filename = file.path(tempdir(), 'file.csv'), + export.all = 'Layers', + variables = list(height = 'height_top', hardness = 'hardness', + gtype = 'gt1')) > > > ## export all layer properties of a snowprofile object plus the station ID: > > export.snowprofileCsv(SPpairs$A_manual, filename = file.path(tempdir(), 'file.csv'), + export.all = 'Layers', variables = list(station_id = 'station_id')) > > ## check the content of the exported csv file: > csv_content <- read.csv(file.path(tempdir(), 'file.csv')) > head(csv_content)      station_id depth thickness height hardness gtype gsize_avg gsize_max lwc 1 niviz_station 250 10 10 5 MFcr 1.5 1.5 D 2 niviz_station 230 20 30 3 FC 2.0 2.0 D 3 niviz_station 220 10 40 5 MFcr 1.5 1.5 D 4 niviz_station 157 63 103 4 RG 0.3 0.3 D 5 niviz_station 155 5 105 2 SH 5.0 5.0 D 6 niviz_station 95 60 165 4 RG 0.3 0.3 D   gtype_sec ddate 1 <NA> <NA> 2 <NA> <NA> 3 <NA> <NA> 4 <NA> <NA> 5 <NA> <NA> 6 <NA> <NA> > > ## or re-import the csv file as snowprofile object: > csv_snowprofile <- snowprofileCsv(file.path(tempdir(), 'file.csv')) Error in r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0] :   non-numeric argument to binary operator Calls: snowprofileCsv ... format_snowprofileLayers -> snowprofileLayers -> diff -> diff.default Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/3s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘sarp.snowprofile.Rmd’ using rmarkdown Quitting from sarp.snowprofile.Rmd:45-47 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: ! non-numeric argument to binary operator --- Backtrace:     ▆  1. └─sarp.snowprofile::snowprofile(dropNAs = FALSE)  2. ├─base::colnames(layers)  3. │ └─base::is.data.frame(x)  4. └─sarp.snowprofile::snowprofileLayers(dropNAs = FALSE, validate = FALSE)  5. ├─base::diff(sapply(entries[!is.na(entries)], length))  6. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'sarp.snowprofile.Rmd' failed with diagnostics: non-numeric argument to binary operator --- failed re-building ‘sarp.snowprofile.Rmd’ SUMMARY: processing the following file failed:   ‘sarp.snowprofile.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [7s/9s] OK
• checking HTML version of manual ... [5s/7s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs