- using R Under development (unstable) (2025-06-27 r88363)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (3+b1)
Debian flang-new version 19.1.7 (3+b1)
- running under: Debian GNU/Linux 13 (trixie)
- using session charset: UTF-8
- checking for file ‘samr/DESCRIPTION’ ... OK
- this is package ‘samr’ version ‘3.0’
- checking CRAN incoming feasibility ... [1s/1s] NOTE
Maintainer: ‘Rob Tibshirani <tibs@stanford.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "R.",
family = "Tibshirani",
role = "aut"),
person(given = c("Michael", "J."),
family = "Seo",
role = "aut"),
person(given = "G.",
family = "Chu",
role = "aut"),
person(given = "Balasubramanian",
family = "Narasimhan",
role = "aut"),
person(given = "Jun",
family = "Li",
role = "aut"),
person(given = "Rob",
family = "Tibshirani",
role = "cre",
email = "tibs@stanford.edu"))
as necessary.
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘samr’ can be installed ... OK
See the install log for details.
- used C compiler: ‘Debian clang version 19.1.7 (3+b1)’
- used Fortran compiler: ‘Debian flang-new version 19.1.7 (3+b1)’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [17s/21s] OK
- checking Rd files ... [0s/0s] NOTE
checkRd: (-1) SAM.Rd:67: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:59: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:84: Escaped LaTeX specials: \# \$
checkRd: (-1) samr.Rd:88: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:92: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:97: Escaped LaTeX specials: \#
checkRd: (-1) samr.assess.samplesize.plot.Rd:12: Escaped LaTeX specials: \#
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking usage of KIND in Fortran files ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking examples ... [26s/30s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
SAMseq 8.589 0.110 10.112
samr 5.686 0.024 6.405
SAM 4.581 0.095 5.821
- checking PDF version of manual ... [5s/8s] OK
- checking HTML version of manual ... [1s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 NOTEs