• using R Under development (unstable) (2025-07-09 r88393)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (3+b1)     Debian flang-new version 19.1.7 (3+b1)
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘samr/DESCRIPTION’ ... OK
• this is package ‘samr’ version ‘3.0’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Rob Tibshirani <tibs@stanford.edu>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = "R.",                       family = "Tibshirani",                       role = "aut"),                person(given = c("Michael", "J."),                       family = "Seo",                       role = "aut"),                person(given = "G.",                       family = "Chu",                       role = "aut"),                person(given = "Balasubramanian",                       family = "Narasimhan",                       role = "aut"),                person(given = "Jun",                       family = "Li",                       role = "aut"),                person(given = "Rob",                       family = "Tibshirani",                       role = "cre",                       email = "tibs@stanford.edu")) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘samr’ can be installed ... OK See the install log for details.
• used C compiler: ‘Debian clang version 19.1.7 (3+b1)’
• used Fortran compiler: ‘Debian flang-new version 19.1.7 (3+b1)’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [17s/22s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) SAM.Rd:67: Escaped LaTeX specials: \$ checkRd: (-1) samr.Rd:59: Escaped LaTeX specials: \$ checkRd: (-1) samr.Rd:84: Escaped LaTeX specials: \# \$ checkRd: (-1) samr.Rd:88: Escaped LaTeX specials: \$ checkRd: (-1) samr.Rd:92: Escaped LaTeX specials: \$ checkRd: (-1) samr.Rd:97: Escaped LaTeX specials: \# checkRd: (-1) samr.assess.samplesize.plot.Rd:12: Escaped LaTeX specials: \#
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking usage of KIND in Fortran files ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [26s/33s] OK Examples with CPU (user + system) or elapsed time > 5s         user system elapsed SAMseq 8.788 0.133 11.360 samr 5.708 0.036 7.430 SAM 4.367 0.075 5.344
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs